RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 GNLYP22749 145 aa12.86□□□□□ -0.35
CCDC88B-210ENST00000494566 ERCC8Q13216 396 aa12.86□□□□□ -0.35
CCDC88B-210ENST00000494566 RIGQ13278 110 aa12.86□□□□□ -0.35
CCDC88B-210ENST00000494566 PCP2Q8IVA1 136 aa12.86□□□□□ -0.35
CCDC88B-210ENST00000494566 VGLL1Q99990 258 aa12.86□□□□□ -0.35
CCDC88B-210ENST00000494566 SIRPDQ9H106 197 aa12.86□□□□□ -0.35
CCDC88B-210ENST00000494566 C7orf71A4D174 169 aa12.86□□□□□ -0.35
CCDC88B-210ENST00000494566 ZNF80P51504 273 aaPredicted RBP12.86□□□□□ -0.35
CCDC88B-210ENST00000494566 RNF182Q8N6D2 247 aa12.86□□□□□ -0.35
CCDC88B-210ENST00000494566 PRELID3AQ96N28 172 aa12.86□□□□□ -0.35
CCDC88B-210ENST00000494566 C1RLQ9NZP8 487 aa12.86□□□□□ -0.35
CCDC88B-210ENST00000494566 TMEM189A5PLL7 270 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 OVOL3O00110 214 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 SH2D1AO60880 128 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 ORM1P02763 201 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 SAA4P35542 130 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 RIPPLY3P57055 190 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 PSG3Q16557 428 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 PIP4P2Q8N4L2 257 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 Q8N6K4 173 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 Q8N9W7 124 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 DKK2Q9UBU2 259 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 A0A096LNJ9 63 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 CCDC144NLQ6NUI1 221 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 C2orf91Q6ZV80 131 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 CST9LQ9H4G1 147 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 USP9XQ93008 2570 aaPredicted RBP12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 G3V318 75 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 Q6ZQT7 251 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 OR10AG1Q8NH19 301 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 SMIM12Q96EX1 92 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 RABAC1Q9UI14 185 aa12.85□□□□□ -0.35
CCDC88B-210ENST00000494566 IGSF10Q6WRI0 2623 aa12.84□□□□□ -0.35
CCDC88B-210ENST00000494566 FAM231BA6NCW3 169 aa12.84□□□□□ -0.35
CCDC88B-210ENST00000494566 H3BUT2 72 aa12.84□□□□□ -0.35
CCDC88B-210ENST00000494566 NPYP01303 97 aa12.84□□□□□ -0.35
CCDC88B-210ENST00000494566 TTC9CQ8N5M4 171 aa12.84□□□□□ -0.35
CCDC88B-210ENST00000494566 LINC00527Q9UJ94 153 aa12.84□□□□□ -0.35
CCDC88B-210ENST00000494566 CRXO43186 299 aaPredicted RBP12.84□□□□□ -0.35
CCDC88B-210ENST00000494566 CTSGP08311 255 aa12.84□□□□□ -0.35
CCDC88B-210ENST00000494566 CKS2P33552 79 aa12.84□□□□□ -0.35
CCDC88B-210ENST00000494566 TMEM219Q86XT9 240 aa12.84□□□□□ -0.35
CCDC88B-210ENST00000494566 AJUBAQ96IF1 538 aa12.84□□□□□ -0.35
CCDC88B-210ENST00000494566 MYO18BQ8IUG5 2567 aa12.83□□□□□ -0.36
CCDC88B-210ENST00000494566 FBLL1A6NHQ2 334 aaKnown RBP12.83□□□□□ -0.36
CCDC88B-210ENST00000494566 NPIPB6E9PJ23 425 aa12.83□□□□□ -0.36
CCDC88B-210ENST00000494566 ATP6V0E1O15342 81 aa12.83□□□□□ -0.36
CCDC88B-210ENST00000494566 CSN1S1P47710 185 aa12.83□□□□□ -0.36
CCDC88B-210ENST00000494566 PET117Q6UWS5 81 aa12.83□□□□□ -0.36
CCDC88B-210ENST00000494566 DEFB125Q8N687 156 aa12.83□□□□□ -0.36
CCDC88B-210ENST00000494566 DOPEY2Q9Y3R5 2298 aa12.83□□□□□ -0.36
CCDC88B-210ENST00000494566 ZFYVE26Q68DK2 2539 aa12.83□□□□□ -0.36
CCDC88B-210ENST00000494566 K7EQM0 130 aa12.83□□□□□ -0.36
CCDC88B-210ENST00000494566 ITLN2Q8WWU7 325 aaPredicted RBP12.83□□□□□ -0.36
CCDC88B-210ENST00000494566 AAMDCQ9H7C9 122 aa12.83□□□□□ -0.36
CCDC88B-210ENST00000494566 MRPL51Q4U2R6 128 aaKnown RBP12.82□□□□□ -0.36
CCDC88B-210ENST00000494566 CT83Q5H943 113 aa12.82□□□□□ -0.36
CCDC88B-210ENST00000494566 SORL1Q92673 2214 aa12.82□□□□□ -0.36
CCDC88B-210ENST00000494566 GAGE12BA1L429 117 aa12.82□□□□□ -0.36
CCDC88B-210ENST00000494566 C15orf32Q32M92 178 aa12.82□□□□□ -0.36
CCDC88B-210ENST00000494566 LINC01545Q5VT33 79 aa12.82□□□□□ -0.36
CCDC88B-210ENST00000494566 C12orf54Q6X4T0 127 aa12.82□□□□□ -0.36
CCDC88B-210ENST00000494566 GFRA4Q9GZZ7 299 aa12.82□□□□□ -0.36
CCDC88B-210ENST00000494566 TRAV30A0A087WSZ9 112 aa12.81□□□□□ -0.36
CCDC88B-210ENST00000494566 PRAC2D3DTV9 90 aa12.81□□□□□ -0.36
CCDC88B-210ENST00000494566 EFNA4P52798 201 aa12.81□□□□□ -0.36
CCDC88B-210ENST00000494566 LMO4P61968 165 aa12.81□□□□□ -0.36
CCDC88B-210ENST00000494566 JMJD8Q96S16 334 aa12.81□□□□□ -0.36
CCDC88B-210ENST00000494566 SMAD5-AS1Q9Y6J3 95 aa12.81□□□□□ -0.36
CCDC88B-210ENST00000494566 CREBBPQ92793 2442 aa12.81□□□□□ -0.36
CCDC88B-210ENST00000494566 CACNA1AO00555 2505 aa12.81□□□□□ -0.36
CCDC88B-210ENST00000494566 CSPG4Q6UVK1 2322 aa12.81□□□□□ -0.36
CCDC88B-210ENST00000494566 TMEM97Q5BJF2 176 aa12.81□□□□□ -0.36
CCDC88B-210ENST00000494566 FAM162BQ5T6X4 162 aa12.81□□□□□ -0.36
CCDC88B-210ENST00000494566 HIST1H1AQ02539 215 aaPredicted RBP12.8□□□□□ -0.36
CCDC88B-210ENST00000494566 OCIAD2Q56VL3 154 aa12.8□□□□□ -0.36
CCDC88B-210ENST00000494566 MINOS1Q5TGZ0 78 aa12.8□□□□□ -0.36
CCDC88B-210ENST00000494566 C1orf122Q6ZSJ8 110 aa12.8□□□□□ -0.36
CCDC88B-210ENST00000494566 SOX21Q9Y651 276 aaPredicted RBP12.8□□□□□ -0.36
CCDC88B-210ENST00000494566 MINOS1-NBL1R4GNA1 71 aa12.8□□□□□ -0.36
CCDC88B-210ENST00000494566 ZANQ9Y493 2812 aa12.8□□□□□ -0.36
CCDC88B-210ENST00000494566 TRAV26-2A0A0B4J265 109 aa12.8□□□□□ -0.36
CCDC88B-210ENST00000494566 CLEC3BP05452 202 aa12.8□□□□□ -0.36
CCDC88B-210ENST00000494566 COX8AP10176 69 aa12.8□□□□□ -0.36
CCDC88B-210ENST00000494566 BRD3OSQ6XYD6 125 aa12.8□□□□□ -0.36
CCDC88B-210ENST00000494566 AP1S3Q96PC3 154 aa12.8□□□□□ -0.36
CCDC88B-210ENST00000494566 POLQO75417 2590 aa12.8□□□□□ -0.36
CCDC88B-210ENST00000494566 AGRNO00468 2067 aa12.79□□□□□ -0.36
CCDC88B-210ENST00000494566 EBI3Q14213 229 aa12.79□□□□□ -0.36
CCDC88B-210ENST00000494566 GAGE10A6NGK3 116 aa12.79□□□□□ -0.36
CCDC88B-210ENST00000494566 ACACBO00763 2458 aa12.79□□□□□ -0.36
CCDC88B-210ENST00000494566 K7ERJ3 54 aa12.78□□□□□ -0.36
CCDC88B-210ENST00000494566 UBE2E1P51965 193 aa12.78□□□□□ -0.36
CCDC88B-210ENST00000494566 CLEC19AQ6UXS0 136 aa12.78□□□□□ -0.36
CCDC88B-210ENST00000494566 ORMDL3Q8N138 153 aa12.78□□□□□ -0.36
CCDC88B-210ENST00000494566 DEFB1P60022 68 aa12.78□□□□□ -0.36
CCDC88B-210ENST00000494566 FAM104BQ5XKR9 115 aa12.78□□□□□ -0.36
CCDC88B-210ENST00000494566 C16orf54Q6UWD8 224 aa12.77□□□□□ -0.36
CCDC88B-210ENST00000494566 LYPD1Q8N2G4 141 aa12.77□□□□□ -0.36
CCDC88B-210ENST00000494566 MEGF9Q9H1U4 602 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms