RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 BOKQ9UMX3 212 aaPredicted RBP0.01□□□□□ -2.41
VPS50-216ENST00000484954 UHRF1BP1Q6BDS2 1440 aa0.01□□□□□ -2.41
VPS50-216ENST00000484954 ERBINQ96RT1 1412 aa0.01□□□□□ -2.41
VPS50-216ENST00000484954 BPTFQ12830 3046 aa0.01□□□□□ -2.41
VPS50-216ENST00000484954 COL24A1Q17RW2 1714 aa0.01□□□□□ -2.41
VPS50-216ENST00000484954 MUC12Q9UKN1 5478 aa0.01□□□□□ -2.41
VPS50-216ENST00000484954 NCOR1O75376 2440 aa0.01□□□□□ -2.41
VPS50-216ENST00000484954 BDP1A6H8Y1 2624 aa0□□□□□ -2.41
VPS50-216ENST00000484954 IGSF10Q6WRI0 2623 aa0□□□□□ -2.41
VPS50-216ENST00000484954 H3BQV1 296 aa0□□□□□ -2.41
VPS50-216ENST00000484954 G0S2P27469 103 aa0□□□□□ -2.41
VPS50-216ENST00000484954 NUP98P52948 1817 aa0□□□□□ -2.41
VPS50-216ENST00000484954 RPL37AP61513 92 aaKnown RBP0□□□□□ -2.41
VPS50-216ENST00000484954 TMEM78Q5T7P6 136 aa0□□□□□ -2.41
VPS50-216ENST00000484954 CSAG1Q6PB30 78 aa0□□□□□ -2.41
VPS50-216ENST00000484954 CD109Q6YHK3 1445 aa0□□□□□ -2.41
VPS50-216ENST00000484954 Q6ZS92 163 aa0□□□□□ -2.41
VPS50-216ENST00000484954 DEFB132Q7Z7B7 95 aa0□□□□□ -2.41
VPS50-216ENST00000484954 IFT20Q8IY31 132 aa0□□□□□ -2.41
VPS50-216ENST00000484954 STX19Q8N4C7 294 aa0□□□□□ -2.41
VPS50-216ENST00000484954 C5orf17Q8NAS9 161 aa0□□□□□ -2.41
VPS50-216ENST00000484954 LINC00208Q96KT6 92 aa0□□□□□ -2.41
VPS50-216ENST00000484954 OR4C12Q96R67 309 aa0□□□□□ -2.41
VPS50-216ENST00000484954 GID8Q9NWU2 228 aa0□□□□□ -2.41
VPS50-216ENST00000484954 MED11Q9P086 117 aa0□□□□□ -2.41
VPS50-216ENST00000484954 STOML2Q9UJZ1 356 aa0□□□□□ -2.41
VPS50-216ENST00000484954 NISCHQ9Y2I1 1504 aa0□□□□□ -2.41
VPS50-216ENST00000484954 TPRKBQ9Y3C4 175 aa0□□□□□ -2.41
VPS50-216ENST00000484954 ZGRF1Q86YA3 2104 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 PTPRFP10586 1907 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 CAMSAP1Q5T5Y3 1602 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 RNF213Q63HN8 5207 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 TRDV1A0A1B0GX56 115 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 A0A1W2PRE2 83 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 LY6G6CO95867 125 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 MT-ND6P03923 174 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 FABP4P15090 132 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 GNG10P50151 68 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 GLYATL3Q5SZD4 288 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 DCUN1D2Q6PH85 259 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 C10orf99Q6UWK7 81 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 IZUMO2Q6UXV1 221 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 ANGPTL5Q86XS5 388 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 FAM24BQ8N5W8 94 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 EFCAB11Q9BUY7 163 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 FKBP11Q9NYL4 201 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 LAMTOR3Q9UHA4 124 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 SPTBP11277 2137 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 SIP14410 1827 aa-0.01□□□□□ -2.41
VPS50-216ENST00000484954 TRPM1Q7Z4N2 1603 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 VWFP04275 2813 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 FANCMQ8IYD8 2048 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 TRBV27A0A0K0K1C4 114 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 NBDYA0A0U1RRE5 68 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 MAP1LC3B2A6NCE7 125 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 PPP5D1E7EU14 171 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 GABARAPH6UMI1 98 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 SULT1C4O75897 302 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 TRACP01848 142 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 FABP2P12104 132 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 TCTAP57738 103 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 QRFPP83859 136 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 NEDD8Q15843 81 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 XAF1Q6GPH4 301 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 C3orf33Q6P1S2 294 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 HRCT1Q6UXD1 115 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 CASC2Q6XLA1 102 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 TMEM229BQ8NBD8 167 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 GRPEL2Q8TAA5 225 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 NEK7Q8TDX7 302 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 DYDC1Q8WWB3 177 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 ISOC1Q96CN7 298 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 MCEEQ96PE7 176 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 LPAR5Q9H1C0 372 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 BIN3Q9NQY0 253 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 CREBBPQ92793 2442 aa-0.02□□□□□ -2.41
VPS50-216ENST00000484954 TECPR2O15040 1411 aa-0.03□□□□□ -2.41
VPS50-216ENST00000484954 C3orf85A0A1B0GTC6 90 aa-0.03□□□□□ -2.41
VPS50-216ENST00000484954 LOC101927531A0A1B0GV80 90 aa-0.03□□□□□ -2.41
VPS50-216ENST00000484954 H3BMG7 143 aa-0.03□□□□□ -2.41
VPS50-216ENST00000484954 GYPBP06028 91 aa-0.03□□□□□ -2.41
VPS50-216ENST00000484954 BCL2P10415 239 aa-0.03□□□□□ -2.41
VPS50-216ENST00000484954 SLC25A4P12235 298 aa-0.03□□□□□ -2.41
VPS50-216ENST00000484954 KDELR1P24390 212 aa-0.03□□□□□ -2.41
VPS50-216ENST00000484954 SERPINB1P30740 379 aa-0.03□□□□□ -2.41
VPS50-216ENST00000484954 S100A11P31949 105 aa-0.03□□□□□ -2.41
VPS50-216ENST00000484954 CAV3P56539 151 aa-0.03□□□□□ -2.41
VPS50-216ENST00000484954 KRTAP20-1Q3LI63 56 aa-0.03□□□□□ -2.41
VPS50-216ENST00000484954 CLEC2BQ92478 149 aa-0.03□□□□□ -2.41
VPS50-216ENST00000484954 COMMD3Q9UBI1 195 aa-0.03□□□□□ -2.41
VPS50-216ENST00000484954 HRNRQ86YZ3 2850 aaPredicted RBP-0.04□□□□□ -2.42
VPS50-216ENST00000484954 TRAPPC8Q9Y2L5 1435 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 RIF1Q5UIP0 2472 aaKnown RBP-0.04□□□□□ -2.42
VPS50-216ENST00000484954 DMBT1Q9UGM3 2413 aaPredicted RBP-0.04□□□□□ -2.42
VPS50-216ENST00000484954 DSPPQ9NZW4 1301 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 LOC107984156A0A0G2JMH3 177 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 A0A1W2PPB8 328 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 A0A1W2PRS3 328 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 KIR3DP1A8MWS1 328 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 TPT1P13693 172 aaKnown RBP-0.04□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms