RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 SMPXQ9UHP9 88 aa10.42□□□□□ -0.74
USP40-214ENST00000483519 IGKV2D-26A0A0A0MRZ7 120 aa10.42□□□□□ -0.74
USP40-214ENST00000483519 PRSS1P07477 247 aa10.42□□□□□ -0.74
USP40-214ENST00000483519 HLA-DRB4P13762 266 aa10.42□□□□□ -0.74
USP40-214ENST00000483519 AZU1P20160 251 aa10.42□□□□□ -0.74
USP40-214ENST00000483519 LEPP41159 167 aa10.42□□□□□ -0.74
USP40-214ENST00000483519 TM2D2Q9BX73 214 aa10.42□□□□□ -0.74
USP40-214ENST00000483519 HHLA3Q9XRX5 114 aa10.42□□□□□ -0.74
USP40-214ENST00000483519 HLA-DRB4X5D2U9 266 aa10.42□□□□□ -0.74
USP40-214ENST00000483519 F8W1H4 67 aa10.41□□□□□ -0.74
USP40-214ENST00000483519 EVI2AP22794 236 aa10.41□□□□□ -0.74
USP40-214ENST00000483519 CEND1Q8N111 149 aa10.41□□□□□ -0.74
USP40-214ENST00000483519 PHLDA1Q8WV24 401 aaPredicted RBP10.41□□□□□ -0.74
USP40-214ENST00000483519 RAB1BQ9H0U4 201 aa10.41□□□□□ -0.74
USP40-214ENST00000483519 NHP2Q9NX24 153 aaKnown RBP10.41□□□□□ -0.74
USP40-214ENST00000483519 USP24Q9UPU5 2620 aa10.41□□□□□ -0.74
USP40-214ENST00000483519 TRBV25-1A0A075B6N4 114 aa10.41□□□□□ -0.74
USP40-214ENST00000483519 K7ERJ3 54 aa10.41□□□□□ -0.74
USP40-214ENST00000483519 ATP5LO75964 103 aa10.41□□□□□ -0.74
USP40-214ENST00000483519 CNIH1O95406 144 aa10.41□□□□□ -0.74
USP40-214ENST00000483519 EGR2P11161 476 aaPredicted RBP10.41□□□□□ -0.74
USP40-214ENST00000483519 ARL3P36405 182 aa10.41□□□□□ -0.74
USP40-214ENST00000483519 ZNF562Q6V9R5 426 aa10.41□□□□□ -0.74
USP40-214ENST00000483519 PRR25Q96S07 402 aa10.41□□□□□ -0.74
USP40-214ENST00000483519 DPM2O94777 84 aa10.4□□□□□ -0.74
USP40-214ENST00000483519 IGLV1-47P01700 117 aa10.4□□□□□ -0.74
USP40-214ENST00000483519 IGLC6P0CF74 106 aa10.4□□□□□ -0.74
USP40-214ENST00000483519 SRSF1Q07955 248 aaKnown RBP eCLIP10.4□□□□□ -0.74
USP40-214ENST00000483519 Q6ZS92 163 aa10.4□□□□□ -0.74
USP40-214ENST00000483519 RNF5Q99942 180 aa10.4□□□□□ -0.74
USP40-214ENST00000483519 GTSF1LQ9H1H1 148 aa10.4□□□□□ -0.74
USP40-214ENST00000483519 SVILO95425 2214 aa10.4□□□□□ -0.74
USP40-214ENST00000483519 BUB1B-PAK6H3BSN5 160 aa10.4□□□□□ -0.75
USP40-214ENST00000483519 CD300EQ496F6 205 aaPredicted RBP10.4□□□□□ -0.75
USP40-214ENST00000483519 IGKV2-40A0A087WW87 121 aaPredicted RBP10.39□□□□□ -0.75
USP40-214ENST00000483519 E9PLD3 99 aa10.39□□□□□ -0.75
USP40-214ENST00000483519 ZNF207O43670 478 aaKnown RBP10.39□□□□□ -0.75
USP40-214ENST00000483519 IGKV2D-40P01614 121 aaPredicted RBP10.39□□□□□ -0.75
USP40-214ENST00000483519 SRSF2Q01130 221 aaKnown RBP10.39□□□□□ -0.75
USP40-214ENST00000483519 KLRB1Q12918 225 aa10.39□□□□□ -0.75
USP40-214ENST00000483519 RPEQ96AT9 228 aa10.39□□□□□ -0.75
USP40-214ENST00000483519 KLF17Q5JT82 389 aaPredicted RBP10.39□□□□□ -0.75
USP40-214ENST00000483519 FOXI2Q6ZQN5 318 aa10.39□□□□□ -0.75
USP40-214ENST00000483519 RNF185Q96GF1 192 aa10.39□□□□□ -0.75
USP40-214ENST00000483519 ZNF48Q96MX3 618 aaPredicted RBP10.39□□□□□ -0.75
USP40-214ENST00000483519 A0A1B0GV72 72 aa10.38□□□□□ -0.75
USP40-214ENST00000483519 GAGE12HA6NDE8 117 aa10.38□□□□□ -0.75
USP40-214ENST00000483519 SMAGPQ0VAQ4 97 aa10.38□□□□□ -0.75
USP40-214ENST00000483519 TAL2Q16559 108 aa10.38□□□□□ -0.75
USP40-214ENST00000483519 ZC2HC1BQ5TFG8 222 aa10.38□□□□□ -0.75
USP40-214ENST00000483519 FOXC2Q99958 501 aa10.38□□□□□ -0.75
USP40-214ENST00000483519 CNFNQ9BYD5 112 aa10.38□□□□□ -0.75
USP40-214ENST00000483519 TTTY13Q9BZ97 58 aa10.38□□□□□ -0.75
USP40-214ENST00000483519 SPANXB1Q9NS25 103 aaPredicted RBP10.38□□□□□ -0.75
USP40-214ENST00000483519 TSSC4Q9Y5U2 329 aaPredicted RBP10.38□□□□□ -0.75
USP40-214ENST00000483519 A0A1W2PRD5 423 aa10.38□□□□□ -0.75
USP40-214ENST00000483519 A0A1W2PRF3 423 aa10.38□□□□□ -0.75
USP40-214ENST00000483519 A0A1W2PRM7 423 aa10.38□□□□□ -0.75
USP40-214ENST00000483519 GTSCR1Q86UQ5 136 aa10.38□□□□□ -0.75
USP40-214ENST00000483519 NPIPB5A8MRT5 1133 aa10.37□□□□□ -0.75
USP40-214ENST00000483519 RPL7P18124 248 aaKnown RBP10.37□□□□□ -0.75
USP40-214ENST00000483519 EPG5Q9HCE0 2579 aa10.37□□□□□ -0.75
USP40-214ENST00000483519 MALRD1Q5VYJ5 2156 aa10.37□□□□□ -0.75
USP40-214ENST00000483519 IGLL5B9A064 214 aa10.37□□□□□ -0.75
USP40-214ENST00000483519 SCGB2A1O75556 95 aa10.37□□□□□ -0.75
USP40-214ENST00000483519 LY6DQ14210 128 aa10.37□□□□□ -0.75
USP40-214ENST00000483519 BSPH1Q075Z2 132 aa10.36□□□□□ -0.75
USP40-214ENST00000483519 TMEM158Q8WZ71 300 aa10.36□□□□□ -0.75
USP40-214ENST00000483519 DMXL2Q8TDJ6 3036 aa10.36□□□□□ -0.75
USP40-214ENST00000483519 ORM1P02763 201 aa10.36□□□□□ -0.75
USP40-214ENST00000483519 ZNF80P51504 273 aaPredicted RBP10.36□□□□□ -0.75
USP40-214ENST00000483519 Q8TAT8 98 aa10.36□□□□□ -0.75
USP40-214ENST00000483519 SPATA25Q9BR10 227 aa10.36□□□□□ -0.75
USP40-214ENST00000483519 RALYQ9UKM9 306 aaKnown RBP10.36□□□□□ -0.75
USP40-214ENST00000483519 ABCA1O95477 2261 aa10.36□□□□□ -0.75
USP40-214ENST00000483519 C16orf97H3BN30 126 aa10.35□□□□□ -0.75
USP40-214ENST00000483519 DLX1P56177 255 aa10.35□□□□□ -0.75
USP40-214ENST00000483519 WFDC2Q14508 124 aa10.35□□□□□ -0.75
USP40-214ENST00000483519 DYNLRB1Q9NP97 96 aa10.35□□□□□ -0.75
USP40-214ENST00000483519 MSRB1Q9NZV6 116 aa10.35□□□□□ -0.75
USP40-214ENST00000483519 BRI3O95415 125 aa10.35□□□□□ -0.75
USP40-214ENST00000483519 COX7A1P24310 79 aa10.35□□□□□ -0.75
USP40-214ENST00000483519 MFAP4P55083 255 aa10.35□□□□□ -0.75
USP40-214ENST00000483519 GFRALQ6UXV0 394 aa10.35□□□□□ -0.75
USP40-214ENST00000483519 Q8N8P6 123 aa10.35□□□□□ -0.75
USP40-214ENST00000483519 FABP5P3A8MUU1 101 aa10.35□□□□□ -0.75
USP40-214ENST00000483519 PRB3Q04118 309 aaPredicted RBP10.35□□□□□ -0.75
USP40-214ENST00000483519 TTC9CQ8N5M4 171 aa10.35□□□□□ -0.75
USP40-214ENST00000483519 RNASE6Q93091 150 aaKnown RBP10.35□□□□□ -0.75
USP40-214ENST00000483519 ZNF502Q8TBZ5 544 aa10.34□□□□□ -0.75
USP40-214ENST00000483519 MYOZ3Q8TDC0 251 aa10.34□□□□□ -0.75
USP40-214ENST00000483519 CFHR4Q92496 578 aa10.34□□□□□ -0.75
USP40-214ENST00000483519 C12orf74Q32Q52 190 aa10.34□□□□□ -0.75
USP40-214ENST00000483519 S4R3C0 116 aa10.34□□□□□ -0.75
USP40-214ENST00000483519 TRAV40A0A0B4J280 105 aa10.33□□□□□ -0.76
USP40-214ENST00000483519 H3BMG7 143 aa10.33□□□□□ -0.76
USP40-214ENST00000483519 NBR2O15453 112 aa10.33□□□□□ -0.76
USP40-214ENST00000483519 GAS8-AS1O95177 125 aa10.33□□□□□ -0.76
USP40-214ENST00000483519 NCBP2LA6PVI3 153 aaKnown RBP10.33□□□□□ -0.76
USP40-214ENST00000483519 GAGE13Q4V321 117 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms