RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 CASC2Q6XLA1 102 aa0.45□□□□□ -2.34
CCDC88A-212ENST00000474059 CLEC2BQ92478 149 aa0.45□□□□□ -2.34
CCDC88A-212ENST00000474059 RMND5BQ96G75 393 aaPredicted RBP0.45□□□□□ -2.34
CCDC88A-212ENST00000474059 PRELID3AQ96N28 172 aa0.45□□□□□ -2.34
CCDC88A-212ENST00000474059 CCDC32Q9BV29 185 aa0.45□□□□□ -2.34
CCDC88A-212ENST00000474059 ZFC3H1O60293 1989 aaKnown RBP0.45□□□□□ -2.34
CCDC88A-212ENST00000474059 TRBV30A0A0K0K1B3 111 aa0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 C3orf85A0A1B0GTC6 90 aa0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 A0A1B0GV72 72 aa0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 ZNF727A8MUV8 499 aa0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 E7EQ34 232 aa0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 TRACP01848 142 aa0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 NDUFA6P56556 154 aa0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 MAXP61244 160 aa0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 RPL37AP61513 92 aaKnown RBP0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 LINC00305Q7Z4B0 112 aa0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 TEX29Q8N6K0 151 aa0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 OR5AK2Q8NH90 309 aa0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 THEM6Q8WUY1 208 aa0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 LPAR5Q9H1C0 372 aa0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 C10orf95Q9H7T3 257 aa0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 BOKQ9UMX3 212 aaPredicted RBP0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 MED31Q9Y3C7 131 aa0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 V9GYQ6 96 aa0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.44□□□□□ -2.34
CCDC88A-212ENST00000474059 CTTNBP2Q8WZ74 1663 aa0.43□□□□□ -2.34
CCDC88A-212ENST00000474059 A0A0D9SG42 100 aa0.43□□□□□ -2.34
CCDC88A-212ENST00000474059 FAM107AO95990 144 aa0.43□□□□□ -2.34
CCDC88A-212ENST00000474059 TPT1P13693 172 aaKnown RBP0.43□□□□□ -2.34
CCDC88A-212ENST00000474059 PDE6GP18545 87 aa0.43□□□□□ -2.34
CCDC88A-212ENST00000474059 POLR2HP52434 150 aaKnown RBP0.43□□□□□ -2.34
CCDC88A-212ENST00000474059 SPINK9Q5DT21 86 aa0.43□□□□□ -2.34
CCDC88A-212ENST00000474059 SPATA8Q6RVD6 105 aa0.43□□□□□ -2.34
CCDC88A-212ENST00000474059 Q6ZQY7 126 aa0.43□□□□□ -2.34
CCDC88A-212ENST00000474059 Q86TA4 180 aa0.43□□□□□ -2.34
CCDC88A-212ENST00000474059 CENPHQ9H3R5 247 aa0.43□□□□□ -2.34
CCDC88A-212ENST00000474059 FAM135BQ49AJ0 1406 aa0.43□□□□□ -2.34
CCDC88A-212ENST00000474059 FER1L6Q2WGJ9 1857 aa0.43□□□□□ -2.34
CCDC88A-212ENST00000474059 ANK1P16157 1881 aa0.42□□□□□ -2.34
CCDC88A-212ENST00000474059 TRAV13-1A0A0B4J241 112 aa0.42□□□□□ -2.34
CCDC88A-212ENST00000474059 TRBV7-6A0A0J9YX20 115 aa0.42□□□□□ -2.34
CCDC88A-212ENST00000474059 TRBV27A0A0K0K1C4 114 aa0.42□□□□□ -2.34
CCDC88A-212ENST00000474059 SAA1P0DJI8 122 aaPredicted RBP0.42□□□□□ -2.34
CCDC88A-212ENST00000474059 RPL7P18124 248 aaKnown RBP0.42□□□□□ -2.34
CCDC88A-212ENST00000474059 GRPEL2Q8TAA5 225 aa0.42□□□□□ -2.34
CCDC88A-212ENST00000474059 CCL19Q99731 98 aa0.42□□□□□ -2.34
CCDC88A-212ENST00000474059 LXNQ9BS40 222 aa0.42□□□□□ -2.34
CCDC88A-212ENST00000474059 FKBP11Q9NYL4 201 aa0.42□□□□□ -2.34
CCDC88A-212ENST00000474059 TRAPPC2LQ9UL33 140 aa0.42□□□□□ -2.34
CCDC88A-212ENST00000474059 BCORL1Q5H9F3 1711 aa0.41□□□□□ -2.34
CCDC88A-212ENST00000474059 FGD6Q6ZV73 1430 aa0.41□□□□□ -2.34
CCDC88A-212ENST00000474059 LOC107984640A0A0U1RRK4 108 aa0.41□□□□□ -2.34
CCDC88A-212ENST00000474059 PGRMC1O00264 195 aaKnown RBP0.41□□□□□ -2.34
CCDC88A-212ENST00000474059 IFNA21P01568 189 aa0.41□□□□□ -2.34
CCDC88A-212ENST00000474059 SPINT3P49223 89 aa0.41□□□□□ -2.34
CCDC88A-212ENST00000474059 TFAMQ00059 246 aaKnown RBP0.41□□□□□ -2.34
CCDC88A-212ENST00000474059 ATOH7Q8N100 152 aa0.41□□□□□ -2.34
CCDC88A-212ENST00000474059 C5orf17Q8NAS9 161 aa0.41□□□□□ -2.34
CCDC88A-212ENST00000474059 MORN4Q8NDC4 146 aa0.41□□□□□ -2.34
CCDC88A-212ENST00000474059 CIB3Q96Q77 187 aaPredicted RBP0.41□□□□□ -2.34
CCDC88A-212ENST00000474059 NABP2Q9BQ15 211 aa0.41□□□□□ -2.34
CCDC88A-212ENST00000474059 ZGRF1Q86YA3 2104 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 LOC107984156A0A0G2JMH3 177 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 LOC107986453A0A1B0GWG9 222 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 A6NN06 94 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 H3BMG7 143 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 IGHV3-30P01768 117 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 IGHV3-30-5P0DP03 117 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 CCL4P13236 92 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 CRYGSP22914 178 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 SAMD13Q5VXD3 122 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 TOMM20LQ6UXN7 152 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 IZUMO2Q6UXV1 221 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 ARL17AQ8IVW1 177 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 C10orf111Q8N326 155 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 OR51A4Q8NGJ6 313 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 CCDC115Q96NT0 180 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 AP1S3Q96PC3 154 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 CBLN4Q9NTU7 201 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 A2MP01023 1474 aa0.4□□□□□ -2.35
CCDC88A-212ENST00000474059 M0QZK8 103 aa0.39□□□□□ -2.35
CCDC88A-212ENST00000474059 RPS3P23396 243 aaKnown RBP eCLIP0.39□□□□□ -2.35
CCDC88A-212ENST00000474059 SRP9P49458 86 aaKnown RBP0.39□□□□□ -2.35
CCDC88A-212ENST00000474059 ZNF137PP52743 207 aa0.39□□□□□ -2.35
CCDC88A-212ENST00000474059 TMEM128Q5BJH2 165 aa0.39□□□□□ -2.35
CCDC88A-212ENST00000474059 CSAG1Q6PB30 78 aa0.39□□□□□ -2.35
CCDC88A-212ENST00000474059 PLAC4Q8WY50 150 aa0.39□□□□□ -2.35
CCDC88A-212ENST00000474059 SELENOSQ9BQE4 189 aa0.39□□□□□ -2.35
CCDC88A-212ENST00000474059 DDA1Q9BW61 102 aa0.39□□□□□ -2.35
CCDC88A-212ENST00000474059 MPC1Q9Y5U8 109 aa0.39□□□□□ -2.35
CCDC88A-212ENST00000474059 TANC2Q9HCD6 1990 aa0.39□□□□□ -2.35
CCDC88A-212ENST00000474059 MDN1Q9NU22 5596 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 A0A1W2PPB8 328 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 A0A1W2PRS3 328 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 ARL5CA6NH57 179 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 BBIP1A8MTZ0 92 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 KIR3DP1A8MWS1 328 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 SULT1C4O75897 302 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 SLC25A4P12235 298 aa0.38□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms