RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	KCP	Q6ZWJ8	1503 aa		0.48	□□□□□ -2.33
PTCD3-209	ENST00000472044	FER1L6	Q2WGJ9	1857 aa		0.48	□□□□□ -2.33
PTCD3-209	ENST00000472044	KNTC1	P50748	2209 aa		0.48	□□□□□ -2.33
PTCD3-209	ENST00000472044	ZNF727	A8MUV8	499 aa		0.47	□□□□□ -2.33
PTCD3-209	ENST00000472044	FABP2	P12104	132 aa		0.47	□□□□□ -2.33
PTCD3-209	ENST00000472044	KRTAP21-1	Q3LI58	79 aa		0.47	□□□□□ -2.33
PTCD3-209	ENST00000472044	PCBD2	Q9H0N5	130 aa		0.47	□□□□□ -2.33
PTCD3-209	ENST00000472044	LAMTOR2	Q9Y2Q5	125 aa		0.47	□□□□□ -2.33
PTCD3-209	ENST00000472044	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	0.47	□□□□□ -2.33
PTCD3-209	ENST00000472044	NIN	Q8N4C6	2090 aa		0.46	□□□□□ -2.34
PTCD3-209	ENST00000472044	GABARAP	H6UMI1	98 aa		0.46	□□□□□ -2.34
PTCD3-209	ENST00000472044	IGHV3-30	P01768	117 aa		0.46	□□□□□ -2.34
PTCD3-209	ENST00000472044	IGHV3-30-5	P0DP03	117 aa		0.46	□□□□□ -2.34
PTCD3-209	ENST00000472044	CCL4	P13236	92 aa		0.46	□□□□□ -2.34
PTCD3-209	ENST00000472044	CASC2	Q6XLA1	102 aa		0.46	□□□□□ -2.34
PTCD3-209	ENST00000472044		Q6ZS92	163 aa		0.46	□□□□□ -2.34
PTCD3-209	ENST00000472044	ANGPTL5	Q86XS5	388 aa		0.46	□□□□□ -2.34
PTCD3-209	ENST00000472044	C10orf111	Q8N326	155 aa		0.46	□□□□□ -2.34
PTCD3-209	ENST00000472044	NIT2	Q9NQR4	276 aa		0.46	□□□□□ -2.34
PTCD3-209	ENST00000472044	ATPIF1	Q9UII2	106 aa		0.46	□□□□□ -2.34
PTCD3-209	ENST00000472044	PBRM1	Q86U86	1689 aa		0.46	□□□□□ -2.34
PTCD3-209	ENST00000472044	USP24	Q9UPU5	2620 aa		0.46	□□□□□ -2.34
PTCD3-209	ENST00000472044	DLC1	Q96QB1	1528 aa		0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044	BCORL1	Q5H9F3	1711 aa		0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044		A0A1W2PRE2	83 aa		0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044	PFDN1	O60925	122 aa		0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044	TRAC	P01848	142 aa		0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044	S100A11	P31949	105 aa		0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044	SDC2	P34741	201 aa		0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044	RPL37A	P61513	92 aa	Known RBP	0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044	STX12	Q86Y82	276 aa		0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044	OR5H6	Q8NGV6	325 aa		0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044	OR5AK2	Q8NH90	309 aa		0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044	GRPEL2	Q8TAA5	225 aa		0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044	RMND5B	Q96G75	393 aa	Predicted RBP	0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044	PRELID3A	Q96N28	172 aa		0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044	CCDC32	Q9BV29	185 aa		0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044	SMPX	Q9UHP9	88 aa		0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044	TRPM7	Q96QT4	1865 aa		0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044	NAV3	Q8IVL0	2385 aa		0.45	□□□□□ -2.34
PTCD3-209	ENST00000472044	MYH1	P12882	1939 aa		0.44	□□□□□ -2.34
PTCD3-209	ENST00000472044	NUPR2	A6NF83	97 aa		0.44	□□□□□ -2.34
PTCD3-209	ENST00000472044	NDUFA6	P56556	154 aa		0.44	□□□□□ -2.34
PTCD3-209	ENST00000472044	NEDD8	Q15843	81 aa		0.44	□□□□□ -2.34
PTCD3-209	ENST00000472044	IZUMO2	Q6UXV1	221 aa		0.44	□□□□□ -2.34
PTCD3-209	ENST00000472044	CLEC2B	Q92478	149 aa		0.44	□□□□□ -2.34
PTCD3-209	ENST00000472044	CCL19	Q99731	98 aa		0.44	□□□□□ -2.34
PTCD3-209	ENST00000472044	TRBV7-6	A0A0J9YX20	115 aa		0.43	□□□□□ -2.34
PTCD3-209	ENST00000472044	TRBV27	A0A0K0K1C4	114 aa		0.43	□□□□□ -2.34
PTCD3-209	ENST00000472044	C5orf58	C9J3I9	102 aa		0.43	□□□□□ -2.34
PTCD3-209	ENST00000472044		E7EQ34	232 aa		0.43	□□□□□ -2.34
PTCD3-209	ENST00000472044	FAM107A	O95990	144 aa		0.43	□□□□□ -2.34
PTCD3-209	ENST00000472044	PRH1	P02810	166 aa		0.43	□□□□□ -2.34
PTCD3-209	ENST00000472044	SAA1	P0DJI8	122 aa	Predicted RBP	0.43	□□□□□ -2.34
PTCD3-209	ENST00000472044	TPT1	P13693	172 aa	Known RBP	0.43	□□□□□ -2.34
PTCD3-209	ENST00000472044	S100A5	P33763	92 aa		0.43	□□□□□ -2.34
PTCD3-209	ENST00000472044	FXYD6P3	P58550	94 aa		0.43	□□□□□ -2.34
PTCD3-209	ENST00000472044	MAX	P61244	160 aa		0.43	□□□□□ -2.34
PTCD3-209	ENST00000472044	CIB3	Q96Q77	187 aa	Predicted RBP	0.43	□□□□□ -2.34
PTCD3-209	ENST00000472044	LPAR5	Q9H1C0	372 aa		0.43	□□□□□ -2.34
PTCD3-209	ENST00000472044	CENPH	Q9H3R5	247 aa		0.43	□□□□□ -2.34
PTCD3-209	ENST00000472044	JPT1	Q9UK76	154 aa		0.43	□□□□□ -2.34
PTCD3-209	ENST00000472044	FAM135B	Q49AJ0	1406 aa		0.42	□□□□□ -2.34
PTCD3-209	ENST00000472044	SPINT3	P49223	89 aa		0.42	□□□□□ -2.34
PTCD3-209	ENST00000472044	ZNF137P	P52743	207 aa		0.42	□□□□□ -2.34
PTCD3-209	ENST00000472044	C10orf99	Q6UWK7	81 aa		0.42	□□□□□ -2.34
PTCD3-209	ENST00000472044	LINC00305	Q7Z4B0	112 aa		0.42	□□□□□ -2.34
PTCD3-209	ENST00000472044	THEM6	Q8WUY1	208 aa		0.42	□□□□□ -2.34
PTCD3-209	ENST00000472044	PLAC4	Q8WY50	150 aa		0.42	□□□□□ -2.34
PTCD3-209	ENST00000472044	SMR3A	Q99954	134 aa		0.42	□□□□□ -2.34
PTCD3-209	ENST00000472044	PLAC8	Q9NZF1	115 aa		0.42	□□□□□ -2.34
PTCD3-209	ENST00000472044	MED31	Q9Y3C7	131 aa		0.42	□□□□□ -2.34
PTCD3-209	ENST00000472044	LOC285556	D6RIA3	1793 aa		0.42	□□□□□ -2.34
PTCD3-209	ENST00000472044	C3orf85	A0A1B0GTC6	90 aa		0.41	□□□□□ -2.34
PTCD3-209	ENST00000472044	CCSMST1	Q4G0I0	132 aa		0.41	□□□□□ -2.34
PTCD3-209	ENST00000472044		Q86TA4	180 aa		0.41	□□□□□ -2.34
PTCD3-209	ENST00000472044	C5orf17	Q8NAS9	161 aa		0.41	□□□□□ -2.34
PTCD3-209	ENST00000472044	MORN4	Q8NDC4	146 aa		0.41	□□□□□ -2.34
PTCD3-209	ENST00000472044	AP1S3	Q96PC3	154 aa		0.41	□□□□□ -2.34
PTCD3-209	ENST00000472044		A0A1B0GV72	72 aa		0.4	□□□□□ -2.35
PTCD3-209	ENST00000472044	PHGR1	C9JFL3	82 aa		0.4	□□□□□ -2.35
PTCD3-209	ENST00000472044	SRP9	P49458	86 aa	Known RBP	0.4	□□□□□ -2.35
PTCD3-209	ENST00000472044	POLR2H	P52434	150 aa	Known RBP	0.4	□□□□□ -2.35
PTCD3-209	ENST00000472044	C6orf52	Q5T4I8	152 aa		0.4	□□□□□ -2.35
PTCD3-209	ENST00000472044	HRCT1	Q6UXD1	115 aa		0.4	□□□□□ -2.35
PTCD3-209	ENST00000472044	NABP2	Q9BQ15	211 aa		0.4	□□□□□ -2.35
PTCD3-209	ENST00000472044	LXN	Q9BS40	222 aa		0.4	□□□□□ -2.35
PTCD3-209	ENST00000472044	MPC1	Q9Y5U8	109 aa		0.4	□□□□□ -2.35
PTCD3-209	ENST00000472044		V9GYQ6	96 aa		0.4	□□□□□ -2.35
PTCD3-209	ENST00000472044	CACNA1E	Q15878	2313 aa		0.39	□□□□□ -2.35
PTCD3-209	ENST00000472044	FGD6	Q6ZV73	1430 aa		0.39	□□□□□ -2.35
PTCD3-209	ENST00000472044	WDR97	A6NE52	1622 aa		0.39	□□□□□ -2.35
PTCD3-209	ENST00000472044	XIRP1	Q702N8	1843 aa	Known RBP	0.39	□□□□□ -2.35
PTCD3-209	ENST00000472044	TRAV13-1	A0A0B4J241	112 aa		0.39	□□□□□ -2.35
PTCD3-209	ENST00000472044	LOC107986453	A0A1B0GWG9	222 aa		0.39	□□□□□ -2.35
PTCD3-209	ENST00000472044	SULT1C4	O75897	302 aa		0.39	□□□□□ -2.35
PTCD3-209	ENST00000472044	GYPB	P06028	91 aa		0.39	□□□□□ -2.35
PTCD3-209	ENST00000472044	FABP1	P07148	127 aa		0.39	□□□□□ -2.35
PTCD3-209	ENST00000472044	SPINK7	P58062	85 aa		0.39	□□□□□ -2.35
PTCD3-209	ENST00000472044	DNAJB13	P59910	316 aa		0.39	□□□□□ -2.35

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