RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 AKR1C8PQ5T2L2 129 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 ZNF818PQ6ZRF7 136 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 SVBPQ8N300 66 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 ZNF436-AS1Q8NC38 126 aaPredicted RBP2.11□□□□□ -2.07
VPS41-210ENST00000462429 OR8A1Q8NGG7 326 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 OR51H1Q8NH63 302 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 MRPL30Q8TCC3 161 aaKnown RBP2.11□□□□□ -2.07
VPS41-210ENST00000462429 MAFIPQ8WZ33 124 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 YPEL2Q96QA6 119 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 ZNF251Q9BRH9 671 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 C1QTNF6Q9BXI9 259 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 TLNRD1Q9H1K6 362 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 HES4Q9HCC6 221 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 KCNIP2Q9NS61 270 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 LYRM2Q9NU23 88 aaPredicted RBP2.11□□□□□ -2.07
VPS41-210ENST00000462429 FKBP11Q9NYL4 201 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 NAGKQ9UJ70 344 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 JPT1Q9UK76 154 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 PRELID1Q9Y255 219 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 LSM5Q9Y4Y9 91 aaKnown RBP2.11□□□□□ -2.07
VPS41-210ENST00000462429 TRAPPC1Q9Y5R8 145 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 CACNA1HO95180 2353 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 SPTBN5Q9NRC6 3674 aaKnown RBP2.11□□□□□ -2.07
VPS41-210ENST00000462429 RTTNQ86VV8 2226 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 MED12LQ86YW9 2145 aa2.11□□□□□ -2.07
VPS41-210ENST00000462429 HEATR1Q9H583 2144 aaKnown RBP2.11□□□□□ -2.07
VPS41-210ENST00000462429 PTPRBP23467 1997 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 FREM1Q5H8C1 2179 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 EYSQ5T1H1 3165 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 OTOGLQ3ZCN5 2332 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 TRAV14DV4A0A0A6YYC5 116 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 IGKV2-24A0A0C4DH68 120 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 C17orf112F2Z3M2 114 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 TCF21O43680 179 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 SYNGR2O43760 224 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 PITX3O75364 302 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 CRYZL1O95825 349 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 MT-CO2P00403 227 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 IFNA1P01562 189 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 HBZP02008 142 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 NMBP08949 121 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 INAFM2P0DMQ5 153 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 CNTFRP26992 372 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 SULT1A1P50225 295 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 DLX6P56179 175 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 EDDM3BP56851 147 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 AESQ08117 197 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 RTL8BQ17RB0 113 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 FAM162BQ5T6X4 162 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 LYZL2Q7Z4W2 148 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 DOLPP1Q86YN1 238 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 ST6GALNAC3Q8NDV1 305 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 OR10P1Q8NGE3 313 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 VSTM2AQ8TAG5 236 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 SUN5Q8TC36 379 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 SEC11CQ9BY50 192 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 OR2D2Q9H210 308 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 DYNLRB1Q9NP97 96 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 ENY2Q9NPA8 101 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 ASF1BQ9NVP2 202 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 R4GN34 69 aa2.1□□□□□ -2.07
VPS41-210ENST00000462429 PTPRZ1P23471 2315 aaPredicted RBP2.09□□□□□ -2.07
VPS41-210ENST00000462429 LAMA1P25391 3075 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 FAM186AA6NE01 2351 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 CACNA1GO43497 2377 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 WDR87Q6ZQQ6 2873 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 EP300Q09472 2414 aaPredicted RBP2.09□□□□□ -2.07
VPS41-210ENST00000462429 URB1O60287 2271 aaKnown RBP2.09□□□□□ -2.07
VPS41-210ENST00000462429 A0A1W2PNN7 141 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 ODAMA1E959 279 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 CEBPZOSA8MTT3 80 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 F8W036 122 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 G3V3Q6 166 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 H3BMM0 161 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 CYB5BO43169 146 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 NDUFB3O43676 98 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 SSSCA1O60232 199 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 CFDP00746 253 aaPredicted RBP2.09□□□□□ -2.07
VPS41-210ENST00000462429 IFNA17P01571 189 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 APOA2P02652 100 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 APOC3P02656 99 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 OR4A8P0C604 315 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 HRES1P13985 223 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 CA7P43166 264 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 LPAR6P43657 344 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 RAB13P51153 203 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 SPCS3P61009 180 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 ERVS71-1P61550 626 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 ERHP84090 104 aaKnown RBP2.09□□□□□ -2.07
VPS41-210ENST00000462429 RPL19P84098 196 aaKnown RBP2.09□□□□□ -2.07
VPS41-210ENST00000462429 DEFA5Q01523 94 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 TNFRSF9Q07011 255 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 EDDM3AQ14507 147 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 KRTAP25-1Q3LHN0 102 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 MORN2Q502X0 79 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 NMSQ5H8A3 153 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 TEX36Q5VZQ5 186 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 S100A7AQ86SG5 101 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 MUC15Q8N387 334 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 OR5C1Q8NGR4 320 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms