RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 A0A1B0GUT8 65 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 NPIPB5A8MRT5 1133 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 H0Y8G0 127 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 CT45A10P0DMU9 189 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 HOXB4P17483 251 aaPredicted RBP8.33□□□□□ -1.08
CUX1-205ENST00000425244 SCGB2A2Q13296 93 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 SPATA12Q7Z6I5 190 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 LAMTOR2Q9Y2Q5 125 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 ITPR3Q14573 2671 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 MXRA5Q9NR99 2828 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 IGKV2-40A0A087WW87 121 aaPredicted RBP8.33□□□□□ -1.08
CUX1-205ENST00000425244 IGHV1-24A0A0C4DH33 117 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 MUC21A0A0G2JKD1 596 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 MUC21A0A140T8X8 626 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 C2orf70A6NJV1 201 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 RNF223E7ERA6 249 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 MRPS12O15235 138 aaKnown RBP8.33□□□□□ -1.08
CUX1-205ENST00000425244 IGKV2D-40P01614 121 aaPredicted RBP8.33□□□□□ -1.08
CUX1-205ENST00000425244 MUC21Q5SSG8 566 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 IGFL4Q6B9Z1 124 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 KLHDC1Q8N7A1 406 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 PDZD2O15018 2839 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 FAM231BA6NCW3 169 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 F8W735 103 aaPredicted RBP8.32□□□□□ -1.08
CUX1-205ENST00000425244 CSN1S1P47710 185 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 CRIP1P50238 77 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 ECSCRQ19T08 205 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 FAM120AOSQ5T036 256 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 TMUB1Q9BVT8 246 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 THYN1Q9P016 225 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 SMPXQ9UHP9 88 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 FLNAP21333 2647 aaKnown RBP8.32□□□□□ -1.08
CUX1-205ENST00000425244 HAX1O00165 279 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 APOHP02749 345 aaPredicted RBP8.32□□□□□ -1.08
CUX1-205ENST00000425244 RHOGP84095 191 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 DEFB113Q30KQ7 82 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 FAM162BQ5T6X4 162 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 LYPD1Q8N2G4 141 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 TTC9CQ8N5M4 171 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 TMEM70Q9BUB7 260 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 SIRPDQ9H106 197 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 MEGF9Q9H1U4 602 aa8.32□□□□□ -1.08
CUX1-205ENST00000425244 TRAV9-2A0A087WT02 112 aa8.31□□□□□ -1.08
CUX1-205ENST00000425244 LEPROTL1O95214 131 aa8.31□□□□□ -1.08
CUX1-205ENST00000425244 RIGQ13278 110 aa8.31□□□□□ -1.08
CUX1-205ENST00000425244 BRD3OSQ6XYD6 125 aa8.31□□□□□ -1.08
CUX1-205ENST00000425244 IGHV7-81A0A0B4J1V7 117 aa8.31□□□□□ -1.08
CUX1-205ENST00000425244 Q8TAT8 98 aa8.31□□□□□ -1.08
CUX1-205ENST00000425244 CHCHD1Q96BP2 118 aaKnown RBP8.31□□□□□ -1.08
CUX1-205ENST00000425244 ZNF48Q96MX3 618 aaPredicted RBP8.31□□□□□ -1.08
CUX1-205ENST00000425244 MCRIP2Q9BUT9 160 aaKnown RBP8.31□□□□□ -1.08
CUX1-205ENST00000425244 C1RLQ9NZP8 487 aa8.31□□□□□ -1.08
CUX1-205ENST00000425244 AKAP9Q99996 3911 aa8.31□□□□□ -1.08
CUX1-205ENST00000425244 TRBV6-1A0A0K0K1D8 114 aa8.3□□□□□ -1.08
CUX1-205ENST00000425244 GPR183P32249 361 aa8.3□□□□□ -1.08
CUX1-205ENST00000425244 NDFIP1Q9BT67 221 aa8.3□□□□□ -1.08
CUX1-205ENST00000425244 HIF1ANQ9NWT6 349 aa8.3□□□□□ -1.08
CUX1-205ENST00000425244 TRAV40A0A0B4J280 105 aa8.3□□□□□ -1.08
CUX1-205ENST00000425244 CTSGP08311 255 aa8.3□□□□□ -1.08
CUX1-205ENST00000425244 FAM106CPP0CH98 169 aa8.3□□□□□ -1.08
CUX1-205ENST00000425244 IGLL1P15814 213 aa8.3□□□□□ -1.08
CUX1-205ENST00000425244 RPL7P18124 248 aaKnown RBP8.3□□□□□ -1.08
CUX1-205ENST00000425244 HLA-DMBP28068 263 aa8.3□□□□□ -1.08
CUX1-205ENST00000425244 VAMP3Q15836 100 aa8.3□□□□□ -1.08
CUX1-205ENST00000425244 Q8N6K4 173 aa8.3□□□□□ -1.08
CUX1-205ENST00000425244 Q96MF0 132 aa8.3□□□□□ -1.08
CUX1-205ENST00000425244 TP73-AS1Q9UF72 201 aa8.3□□□□□ -1.08
CUX1-205ENST00000425244 OR4C46A6NHA9 309 aa8.29□□□□□ -1.08
CUX1-205ENST00000425244 MSMBP08118 114 aa8.29□□□□□ -1.08
CUX1-205ENST00000425244 EGR2P11161 476 aaPredicted RBP8.29□□□□□ -1.08
CUX1-205ENST00000425244 PDE6HQ13956 83 aa8.29□□□□□ -1.08
CUX1-205ENST00000425244 MINOS1Q5TGZ0 78 aa8.29□□□□□ -1.08
CUX1-205ENST00000425244 RABAC1Q9UI14 185 aa8.29□□□□□ -1.08
CUX1-205ENST00000425244 MINOS1-NBL1R4GNA1 71 aa8.29□□□□□ -1.08
CUX1-205ENST00000425244 ACANP16112 2415 aa8.29□□□□□ -1.08
CUX1-205ENST00000425244 IGHV3-66A0A0C4DH42 116 aa8.29□□□□□ -1.08
CUX1-205ENST00000425244 TMEM189A5PLL7 270 aa8.29□□□□□ -1.08
CUX1-205ENST00000425244 SYS1-DBNDD2H3BUS1 97 aa8.29□□□□□ -1.08
CUX1-205ENST00000425244 SH2D1AO60880 128 aa8.29□□□□□ -1.08
CUX1-205ENST00000425244 SCGB2A1O75556 95 aa8.29□□□□□ -1.08
CUX1-205ENST00000425244 SAA4P35542 130 aa8.29□□□□□ -1.08
CUX1-205ENST00000425244 HINT1P49773 126 aaPredicted RBP8.29□□□□□ -1.08
CUX1-205ENST00000425244 PSG9Q00887 426 aa8.29□□□□□ -1.08
CUX1-205ENST00000425244 C15orf32Q32M92 178 aa8.29□□□□□ -1.08
CUX1-205ENST00000425244 PMCHL2Q9BQD1 86 aa8.29□□□□□ -1.08
CUX1-205ENST00000425244 SONP18583 2426 aaKnown RBP8.29□□□□□ -1.08
CUX1-205ENST00000425244 CUBNO60494 3623 aa8.29□□□□□ -1.08
CUX1-205ENST00000425244 IGHV3OR16-13A0A075B7E8 117 aa8.28□□□□□ -1.08
CUX1-205ENST00000425244 IGHV3-74A0A0B4J1X5 117 aa8.28□□□□□ -1.08
CUX1-205ENST00000425244 A0A1B0GV72 72 aa8.28□□□□□ -1.08
CUX1-205ENST00000425244 TMEM213A2RRL7 107 aa8.28□□□□□ -1.08
CUX1-205ENST00000425244 OOSP1A8MZH6 123 aa8.28□□□□□ -1.08
CUX1-205ENST00000425244 TGFAP01135 160 aa8.28□□□□□ -1.08
CUX1-205ENST00000425244 TSPOP30536 169 aa8.28□□□□□ -1.08
CUX1-205ENST00000425244 DSCR9P59020 149 aa8.28□□□□□ -1.08
CUX1-205ENST00000425244 LYZL1Q6UWQ5 148 aa8.28□□□□□ -1.08
CUX1-205ENST00000425244 Q8N9W7 124 aa8.28□□□□□ -1.08
CUX1-205ENST00000425244 LOC389332A0A1B0GUA5 103 aa8.28□□□□□ -1.08
CUX1-205ENST00000425244 hDV102S1A0JD36 115 aa8.28□□□□□ -1.08
CUX1-205ENST00000425244 SAMD13Q5VXD3 122 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms