RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 MSRB1Q9NZV6 116 aa7.43□□□□□ -1.22
COL28A1-201ENST00000399429 NAV3Q8IVL0 2385 aa7.43□□□□□ -1.22
COL28A1-201ENST00000399429 C5orf42Q9H799 3197 aa7.42□□□□□ -1.22
COL28A1-201ENST00000399429 E9PLD3 99 aa7.42□□□□□ -1.22
COL28A1-201ENST00000399429 Q0VFX4 171 aa7.42□□□□□ -1.22
COL28A1-201ENST00000399429 SRSF6Q13247 344 aaKnown RBP7.42□□□□□ -1.22
COL28A1-201ENST00000399429 EDA2RQ9HAV5 297 aa7.42□□□□□ -1.22
COL28A1-201ENST00000399429 HIGD1BQ9P298 99 aa7.42□□□□□ -1.22
COL28A1-201ENST00000399429 PRRC2CQ9Y520 2896 aaKnown RBP7.42□□□□□ -1.22
COL28A1-201ENST00000399429 MALRD1Q5VYJ5 2156 aa7.42□□□□□ -1.22
COL28A1-201ENST00000399429 TRBV19A0A075B6N1 114 aa7.42□□□□□ -1.22
COL28A1-201ENST00000399429 TRAV17A0A0B4J275 112 aa7.42□□□□□ -1.22
COL28A1-201ENST00000399429 TCF15Q12870 199 aa7.42□□□□□ -1.22
COL28A1-201ENST00000399429 TRIP6Q15654 476 aaKnown RBP7.42□□□□□ -1.22
COL28A1-201ENST00000399429 TMEM30BQ3MIR4 351 aa7.42□□□□□ -1.22
COL28A1-201ENST00000399429 DGAT2L7PQ6IED9 249 aa7.42□□□□□ -1.22
COL28A1-201ENST00000399429 BDP1A6H8Y1 2624 aa7.42□□□□□ -1.22
COL28A1-201ENST00000399429 GLRXP35754 106 aa7.41□□□□□ -1.22
COL28A1-201ENST00000399429 KHDC1LQ5JSQ8 128 aa7.41□□□□□ -1.22
COL28A1-201ENST00000399429 SPATA25Q9BR10 227 aa7.41□□□□□ -1.22
COL28A1-201ENST00000399429 TPSG1Q9NRR2 321 aa7.41□□□□□ -1.22
COL28A1-201ENST00000399429 ATXN8Q156A1 80 aa7.41□□□□□ -1.22
COL28A1-201ENST00000399429 C21orf62Q9NYP8 219 aa7.41□□□□□ -1.22
COL28A1-201ENST00000399429 F8VRH5 84 aa7.41□□□□□ -1.22
COL28A1-201ENST00000399429 C17orf58Q2M2W7 97 aa7.41□□□□□ -1.22
COL28A1-201ENST00000399429 THSD7BQ9C0I4 1608 aa7.41□□□□□ -1.22
COL28A1-201ENST00000399429 FCN3O75636 299 aa7.41□□□□□ -1.22
COL28A1-201ENST00000399429 ERCC8Q13216 396 aa7.41□□□□□ -1.22
COL28A1-201ENST00000399429 ODF1Q14990 250 aa7.41□□□□□ -1.22
COL28A1-201ENST00000399429 FAM159AQ6UWV7 190 aa7.41□□□□□ -1.22
COL28A1-201ENST00000399429 ANKRD29Q8N6D5 301 aa7.41□□□□□ -1.22
COL28A1-201ENST00000399429 Q8N8P6 123 aa7.41□□□□□ -1.22
COL28A1-201ENST00000399429 RNF138Q8WVD3 245 aa7.41□□□□□ -1.22
COL28A1-201ENST00000399429 YAE1D1Q9NRH1 226 aa7.41□□□□□ -1.22
COL28A1-201ENST00000399429 C19orf71A6NCJ1 209 aa7.4□□□□□ -1.22
COL28A1-201ENST00000399429 XGP55808 180 aa7.4□□□□□ -1.22
COL28A1-201ENST00000399429 PVRIGQ6DKI7 326 aa7.4□□□□□ -1.22
COL28A1-201ENST00000399429 DTX2Q86UW9 622 aa7.4□□□□□ -1.22
COL28A1-201ENST00000399429 MRPL36Q9P0J6 103 aaKnown RBP7.4□□□□□ -1.22
COL28A1-201ENST00000399429 PRO1854Q9UHT4 67 aa7.4□□□□□ -1.22
COL28A1-201ENST00000399429 TMEM131Q92545 1883 aa7.4□□□□□ -1.22
COL28A1-201ENST00000399429 IGKV3-15P01624 115 aa7.4□□□□□ -1.22
COL28A1-201ENST00000399429 FOXE3Q13461 319 aa7.4□□□□□ -1.22
COL28A1-201ENST00000399429 PAPPA-AS1Q5QFB9 102 aa7.4□□□□□ -1.22
COL28A1-201ENST00000399429 ZFP2Q6ZN57 461 aa7.4□□□□□ -1.22
COL28A1-201ENST00000399429 DEFB123Q8N688 67 aa7.4□□□□□ -1.22
COL28A1-201ENST00000399429 KLHL30-AS1Q8NEE0 82 aa7.4□□□□□ -1.22
COL28A1-201ENST00000399429 PRSS22Q9GZN4 317 aa7.4□□□□□ -1.22
COL28A1-201ENST00000399429 TRAV8-3A0A0A6YYJ7 113 aa7.4□□□□□ -1.23
COL28A1-201ENST00000399429 IGHV1-18A0A0C4DH31 117 aa7.4□□□□□ -1.23
COL28A1-201ENST00000399429 H3BMM0 161 aa7.4□□□□□ -1.23
COL28A1-201ENST00000399429 OR10J6PQ8NGY7 276 aa7.4□□□□□ -1.23
COL28A1-201ENST00000399429 UBE2WQ96B02 151 aa7.4□□□□□ -1.23
COL28A1-201ENST00000399429 ASCL5Q7RTU5 278 aa7.39□□□□□ -1.23
COL28A1-201ENST00000399429 C11orf53Q8IXP5 236 aa7.39□□□□□ -1.23
COL28A1-201ENST00000399429 UBALD2Q8IYN6 164 aa7.39□□□□□ -1.23
COL28A1-201ENST00000399429 C14orf178Q8N769 122 aaPredicted RBP7.39□□□□□ -1.23
COL28A1-201ENST00000399429 A0A087WX48 190 aa7.39□□□□□ -1.23
COL28A1-201ENST00000399429 A0A0U1RRA0 63 aa7.39□□□□□ -1.23
COL28A1-201ENST00000399429 EGR2P11161 476 aaPredicted RBP7.39□□□□□ -1.23
COL28A1-201ENST00000399429 DIAPH2-AS1Q14236 149 aa7.39□□□□□ -1.23
COL28A1-201ENST00000399429 SHANK2-AS3Q9BTD1 123 aa7.39□□□□□ -1.23
COL28A1-201ENST00000399429 E7EUB6 86 aa7.39□□□□□ -1.23
COL28A1-201ENST00000399429 MRPL23Q16540 153 aaKnown RBP7.39□□□□□ -1.23
COL28A1-201ENST00000399429 C2orf66Q6UXQ4 117 aa7.39□□□□□ -1.23
COL28A1-201ENST00000399429 LYPD1Q8N2G4 141 aa7.39□□□□□ -1.23
COL28A1-201ENST00000399429 MAFAQ8NHW3 353 aaPredicted RBP7.39□□□□□ -1.23
COL28A1-201ENST00000399429 SPRR3Q9UBC9 169 aa7.39□□□□□ -1.23
COL28A1-201ENST00000399429 TMEM101Q96IK0 257 aa7.38□□□□□ -1.23
COL28A1-201ENST00000399429 PRR25Q96S07 402 aa7.38□□□□□ -1.23
COL28A1-201ENST00000399429 COLQQ9Y215 455 aaPredicted RBP7.38□□□□□ -1.23
COL28A1-201ENST00000399429 XIRP2A4UGR9 3374 aa7.38□□□□□ -1.23
COL28A1-201ENST00000399429 CNTFRP26992 372 aa7.38□□□□□ -1.23
COL28A1-201ENST00000399429 ASIPP42127 132 aa7.38□□□□□ -1.23
COL28A1-201ENST00000399429 PMVKQ15126 192 aa7.38□□□□□ -1.23
COL28A1-201ENST00000399429 UTF1Q5T230 341 aa7.38□□□□□ -1.23
COL28A1-201ENST00000399429 C9orf106Q8NAJ2 232 aa7.38□□□□□ -1.23
COL28A1-201ENST00000399429 METTL26Q96S19 204 aa7.38□□□□□ -1.23
COL28A1-201ENST00000399429 GP9P14770 177 aa7.38□□□□□ -1.23
COL28A1-201ENST00000399429 NDUFV3P56181 108 aaKnown RBP7.38□□□□□ -1.23
COL28A1-201ENST00000399429 TMEM200BQ69YZ2 307 aa7.38□□□□□ -1.23
COL28A1-201ENST00000399429 C1orf159Q96HA4 380 aa7.38□□□□□ -1.23
COL28A1-201ENST00000399429 MLST8Q9BVC4 326 aa7.38□□□□□ -1.23
COL28A1-201ENST00000399429 POU2AF1Q16633 256 aa7.38□□□□□ -1.23
COL28A1-201ENST00000399429 TM2D2Q9BX73 214 aa7.38□□□□□ -1.23
COL28A1-201ENST00000399429 BRCA2P51587 3418 aa7.38□□□□□ -1.23
COL28A1-201ENST00000399429 DKK1O94907 266 aa7.37□□□□□ -1.23
COL28A1-201ENST00000399429 GFRALQ6UXV0 394 aa7.37□□□□□ -1.23
COL28A1-201ENST00000399429 THAP8Q8NA92 274 aa7.37□□□□□ -1.23
COL28A1-201ENST00000399429 DDB2Q92466 427 aa7.37□□□□□ -1.23
COL28A1-201ENST00000399429 GATA3P23771 443 aa7.37□□□□□ -1.23
COL28A1-201ENST00000399429 IL17RELQ6ZVW7 336 aa7.37□□□□□ -1.23
COL28A1-201ENST00000399429 MAPKAPK5-AS1Q8N8E1 139 aa7.37□□□□□ -1.23
COL28A1-201ENST00000399429 SPANXA1Q9NS26 97 aa7.37□□□□□ -1.23
COL28A1-201ENST00000399429 M0R2P5 195 aa7.37□□□□□ -1.23
COL28A1-201ENST00000399429 ZNF474Q6S9Z5 364 aaPredicted RBP7.37□□□□□ -1.23
COL28A1-201ENST00000399429 SHISA2Q6UWI4 295 aa7.37□□□□□ -1.23
COL28A1-201ENST00000399429 OR13C6PQ8NH95 151 aa7.37□□□□□ -1.23
COL28A1-201ENST00000399429 SIGLEC9Q9Y336 463 aa7.37□□□□□ -1.23
COL28A1-201ENST00000399429 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms