RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 LOXL1Q08397 574 aaPredicted RBP8.28□□□□□ -1.08
COL3A1-202ENST00000317840 IFI27L1Q96BM0 104 aa8.28□□□□□ -1.08
COL3A1-202ENST00000317840 LINC00527Q9UJ94 153 aa8.28□□□□□ -1.08
COL3A1-202ENST00000317840 IGLV2-11P01706 119 aa8.28□□□□□ -1.08
COL3A1-202ENST00000317840 DEFB125Q8N687 156 aa8.28□□□□□ -1.08
COL3A1-202ENST00000317840 GAGE12BA1L429 117 aa8.28□□□□□ -1.08
COL3A1-202ENST00000317840 CRXO43186 299 aaPredicted RBP8.28□□□□□ -1.08
COL3A1-202ENST00000317840 MAP1LC3AQ9H492 121 aa8.28□□□□□ -1.08
COL3A1-202ENST00000317840 SCRT2Q9NQ03 307 aa8.28□□□□□ -1.08
COL3A1-202ENST00000317840 FBLL1A6NHQ2 334 aaKnown RBP8.27□□□□□ -1.09
COL3A1-202ENST00000317840 ZNF207O43670 478 aaKnown RBP8.27□□□□□ -1.09
COL3A1-202ENST00000317840 CD5LO43866 347 aa8.27□□□□□ -1.09
COL3A1-202ENST00000317840 COX8AP10176 69 aa8.27□□□□□ -1.09
COL3A1-202ENST00000317840 RHOGP84095 191 aa8.27□□□□□ -1.09
COL3A1-202ENST00000317840 C5orf64Q2M2E5 130 aa8.27□□□□□ -1.09
COL3A1-202ENST00000317840 FAM104BQ5XKR9 115 aa8.27□□□□□ -1.09
COL3A1-202ENST00000317840 LYPD1Q8N2G4 141 aa8.27□□□□□ -1.09
COL3A1-202ENST00000317840 CST9LQ9H4G1 147 aa8.27□□□□□ -1.09
COL3A1-202ENST00000317840 ZZEF1O43149 2961 aa8.27□□□□□ -1.09
COL3A1-202ENST00000317840 HLA-DMBP28068 263 aa8.27□□□□□ -1.09
COL3A1-202ENST00000317840 MRGPRG-AS1Q2M3A8 158 aa8.27□□□□□ -1.09
COL3A1-202ENST00000317840 ANKRD39Q53RE8 183 aa8.27□□□□□ -1.09
COL3A1-202ENST00000317840 LINC01545Q5VT33 79 aa8.27□□□□□ -1.09
COL3A1-202ENST00000317840 PRSS57Q6UWY2 283 aa8.27□□□□□ -1.09
COL3A1-202ENST00000317840 MAPK1IP1LQ8NDC0 245 aa8.27□□□□□ -1.09
COL3A1-202ENST00000317840 MRPL51Q4U2R6 128 aaKnown RBP8.27□□□□□ -1.09
COL3A1-202ENST00000317840 BPESC1Q9GZL8 116 aa8.27□□□□□ -1.09
COL3A1-202ENST00000317840 NPIPB6E9PJ23 425 aa8.26□□□□□ -1.09
COL3A1-202ENST00000317840 CRIP1P50238 77 aa8.26□□□□□ -1.09
COL3A1-202ENST00000317840 CLEC2AQ6UVW9 174 aa8.26□□□□□ -1.09
COL3A1-202ENST00000317840 TRAV8-6A0A0B4J262 113 aa8.26□□□□□ -1.09
COL3A1-202ENST00000317840 CCDC144NLQ6NUI1 221 aa8.26□□□□□ -1.09
COL3A1-202ENST00000317840 CCL19Q99731 98 aa8.26□□□□□ -1.09
COL3A1-202ENST00000317840 RNF5Q99942 180 aa8.26□□□□□ -1.09
COL3A1-202ENST00000317840 NPYP01303 97 aa8.26□□□□□ -1.09
COL3A1-202ENST00000317840 CRYGBP07316 175 aa8.26□□□□□ -1.09
COL3A1-202ENST00000317840 LEPP41159 167 aa8.26□□□□□ -1.09
COL3A1-202ENST00000317840 VGLL1Q99990 258 aa8.26□□□□□ -1.09
COL3A1-202ENST00000317840 RPL24P83731 157 aaKnown RBP8.25□□□□□ -1.09
COL3A1-202ENST00000317840 OCIAD2Q56VL3 154 aa8.25□□□□□ -1.09
COL3A1-202ENST00000317840 PRR25Q96S07 402 aa8.25□□□□□ -1.09
COL3A1-202ENST00000317840 EGR2P11161 476 aaPredicted RBP8.25□□□□□ -1.09
COL3A1-202ENST00000317840 RPS20P60866 119 aaKnown RBP8.25□□□□□ -1.09
COL3A1-202ENST00000317840 SEC11AP67812 179 aa8.25□□□□□ -1.09
COL3A1-202ENST00000317840 SCGB2A2Q13296 93 aa8.25□□□□□ -1.09
COL3A1-202ENST00000317840 KHDC1LQ5JSQ8 128 aa8.25□□□□□ -1.09
COL3A1-202ENST00000317840 BRD3OSQ6XYD6 125 aa8.25□□□□□ -1.09
COL3A1-202ENST00000317840 NRGNQ92686 78 aa8.25□□□□□ -1.09
COL3A1-202ENST00000317840 MSRB1Q9NZV6 116 aa8.25□□□□□ -1.09
COL3A1-202ENST00000317840 ERCC8Q13216 396 aa8.25□□□□□ -1.09
COL3A1-202ENST00000317840 C1RLQ9NZP8 487 aa8.25□□□□□ -1.09
COL3A1-202ENST00000317840 FABP5P3A8MUU1 101 aa8.24□□□□□ -1.09
COL3A1-202ENST00000317840 RBX1P62877 108 aa8.24□□□□□ -1.09
COL3A1-202ENST00000317840 PDE6HQ13956 83 aa8.24□□□□□ -1.09
COL3A1-202ENST00000317840 TMEM160Q9NX00 188 aa8.24□□□□□ -1.09
COL3A1-202ENST00000317840 GOSR1O95249 250 aa8.24□□□□□ -1.09
COL3A1-202ENST00000317840 SPANXN1Q5VSR9 72 aa8.24□□□□□ -1.09
COL3A1-202ENST00000317840 TMEM219Q86XT9 240 aa8.24□□□□□ -1.09
COL3A1-202ENST00000317840 FOXC2Q99958 501 aa8.24□□□□□ -1.09
COL3A1-202ENST00000317840 TNFRSF13BO14836 293 aaPredicted RBP8.24□□□□□ -1.09
COL3A1-202ENST00000317840 CLEC3BP05452 202 aa8.24□□□□□ -1.09
COL3A1-202ENST00000317840 PCP2Q8IVA1 136 aa8.24□□□□□ -1.09
COL3A1-202ENST00000317840 RNF182Q8N6D2 247 aa8.24□□□□□ -1.09
COL3A1-202ENST00000317840 KLK15Q9H2R5 256 aa8.24□□□□□ -1.09
COL3A1-202ENST00000317840 SMG1Q96Q15 3661 aaKnown RBP8.24□□□□□ -1.09
COL3A1-202ENST00000317840 KIR3DS1Q14943 382 aa8.23□□□□□ -1.09
COL3A1-202ENST00000317840 C15orf32Q32M92 178 aa8.23□□□□□ -1.09
COL3A1-202ENST00000317840 ZNF562Q6V9R5 426 aa8.23□□□□□ -1.09
COL3A1-202ENST00000317840 DKK2Q9UBU2 259 aa8.23□□□□□ -1.09
COL3A1-202ENST00000317840 S100A4P26447 101 aaKnown RBP8.23□□□□□ -1.09
COL3A1-202ENST00000317840 TMEM78Q5T7P6 136 aa8.23□□□□□ -1.09
COL3A1-202ENST00000317840 CLEC19AQ6UXS0 136 aa8.23□□□□□ -1.09
COL3A1-202ENST00000317840 MEGF9Q9H1U4 602 aa8.23□□□□□ -1.09
COL3A1-202ENST00000317840 SORL1Q92673 2214 aa8.23□□□□□ -1.09
COL3A1-202ENST00000317840 VMO1Q7Z5L0 202 aa8.23□□□□□ -1.09
COL3A1-202ENST00000317840 OR2K2Q8NGT1 345 aa8.23□□□□□ -1.09
COL3A1-202ENST00000317840 SRSF8Q9BRL6 282 aaKnown RBP8.23□□□□□ -1.09
COL3A1-202ENST00000317840 SPCS1Q9Y6A9 102 aa8.23□□□□□ -1.09
COL3A1-202ENST00000317840 A0A0G2JLM5 398 aa8.22□□□□□ -1.09
COL3A1-202ENST00000317840 SMAD7O15105 426 aaKnown RBP8.22□□□□□ -1.09
COL3A1-202ENST00000317840 FABP2P12104 132 aa8.22□□□□□ -1.09
COL3A1-202ENST00000317840 COX6B1P14854 86 aa8.22□□□□□ -1.09
COL3A1-202ENST00000317840 RIPPLY3P57055 190 aa8.22□□□□□ -1.09
COL3A1-202ENST00000317840 HSD52Q0P140 79 aa8.22□□□□□ -1.09
COL3A1-202ENST00000317840 MYOZ3Q8TDC0 251 aa8.22□□□□□ -1.09
COL3A1-202ENST00000317840 MTORP42345 2549 aa8.22□□□□□ -1.09
COL3A1-202ENST00000317840 CDKN1BP46527 198 aa8.22□□□□□ -1.09
COL3A1-202ENST00000317840 NDPQ00604 133 aa8.22□□□□□ -1.09
COL3A1-202ENST00000317840 FANCD2OSQ96PS1 177 aa8.22□□□□□ -1.09
COL3A1-202ENST00000317840 TTTY13Q9BZ97 58 aa8.22□□□□□ -1.09
COL3A1-202ENST00000317840 COL12A1Q99715 3063 aa8.21□□□□□ -1.09
COL3A1-202ENST00000317840 K7EP13 123 aa8.21□□□□□ -1.09
COL3A1-202ENST00000317840 GATA1P15976 413 aaPredicted RBP8.21□□□□□ -1.09
COL3A1-202ENST00000317840 LGALS9BQ3B8N2 356 aa8.21□□□□□ -1.09
COL3A1-202ENST00000317840 LGALS9CQ6DKI2 356 aa8.21□□□□□ -1.09
COL3A1-202ENST00000317840 GTSCR1Q86UQ5 136 aa8.21□□□□□ -1.09
COL3A1-202ENST00000317840 C19orf84I3L1E1 186 aa8.21□□□□□ -1.1
COL3A1-202ENST00000317840 PRTN3P24158 256 aa8.21□□□□□ -1.1
COL3A1-202ENST00000317840 ZNF80P51504 273 aaPredicted RBP8.21□□□□□ -1.1
COL3A1-202ENST00000317840 OR9G4Q8NGQ1 327 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms