RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 OVOL1O14753 267 aa7.84□□□□□ -1.15
LIG3-216ENST00000593099 TOMM40O96008 361 aa7.84□□□□□ -1.15
LIG3-216ENST00000593099 IGLV1-47P01700 117 aa7.84□□□□□ -1.15
LIG3-216ENST00000593099 AZU1P20160 251 aa7.84□□□□□ -1.15
LIG3-216ENST00000593099 SRRM4A7MD48 611 aaKnown RBP7.84□□□□□ -1.16
LIG3-216ENST00000593099 TMEM250H0YL14 139 aa7.84□□□□□ -1.16
LIG3-216ENST00000593099 OR11H1Q8NG94 326 aa7.84□□□□□ -1.16
LIG3-216ENST00000593099 SLC25A39Q9BZJ4 359 aaPredicted RBP7.84□□□□□ -1.16
LIG3-216ENST00000593099 TRAV8-4A0A0B4J246 113 aa7.83□□□□□ -1.16
LIG3-216ENST00000593099 OR11H12B2RN74 326 aa7.83□□□□□ -1.16
LIG3-216ENST00000593099 NDPQ00604 133 aa7.83□□□□□ -1.16
LIG3-216ENST00000593099 GAGE13Q4V321 117 aa7.83□□□□□ -1.16
LIG3-216ENST00000593099 TSSC4Q9Y5U2 329 aaPredicted RBP7.83□□□□□ -1.16
LIG3-216ENST00000593099 TMEM50AO95807 157 aa7.83□□□□□ -1.16
LIG3-216ENST00000593099 ZNF688P0C7X2 276 aa7.83□□□□□ -1.16
LIG3-216ENST00000593099 LEPP41159 167 aa7.83□□□□□ -1.16
LIG3-216ENST00000593099 TMEM86BQ8N661 226 aa7.83□□□□□ -1.16
LIG3-216ENST00000593099 DYSFO75923 2080 aa7.83□□□□□ -1.16
LIG3-216ENST00000593099 TNFRSF13BO14836 293 aaPredicted RBP7.83□□□□□ -1.16
LIG3-216ENST00000593099 IGKV1-39P01597 117 aa7.83□□□□□ -1.16
LIG3-216ENST00000593099 IGKV1D-39P04432 117 aa7.83□□□□□ -1.16
LIG3-216ENST00000593099 PYYP10082 97 aa7.83□□□□□ -1.16
LIG3-216ENST00000593099 MLANAQ16655 118 aa7.83□□□□□ -1.16
LIG3-216ENST00000593099 TRAV5A0A0B4J249 113 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 J3KT08 172 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 MEIG1Q5JSS6 88 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 ZNF841Q6ZN19 808 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 C9orf139Q6ZV77 190 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 GLMPQ8WWB7 406 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 SCRT1Q9BWW7 348 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 SELENOKQ9Y6D0 94 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 RANBP2P49792 3224 aaKnown RBP7.82□□□□□ -1.16
LIG3-216ENST00000593099 BLCAPP62952 87 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 TWIST1Q15672 202 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 LY6G5BQ8NDX9 201 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 USP9YO00507 2555 aaPredicted RBP7.82□□□□□ -1.16
LIG3-216ENST00000593099 EREGO14944 169 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 YPEL3P61236 119 aaPredicted RBP7.82□□□□□ -1.16
LIG3-216ENST00000593099 WT1-ASQ06250 92 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 TMEM158Q8WZ71 300 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 JMJD1CQ15652 2540 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 A0A1W2PRE2 83 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 A4D1N5 150 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 LEPROTL1O95214 131 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 APCSP02743 223 aa7.82□□□□□ -1.16
LIG3-216ENST00000593099 ARHGAP21Q5T5U3 1957 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 PMS2P5A8MQ11 134 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 CENPWQ5EE01 88 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 LCN12Q6JVE5 192 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 IGFBPL1Q8WX77 278 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 PKIGQ9Y2B9 76 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 CHD9Q3L8U1 2897 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 BCL6BQ8N143 479 aaPredicted RBP7.81□□□□□ -1.16
LIG3-216ENST00000593099 NPBQ8NG41 125 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 TLN2Q9Y4G6 2542 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 KMT2EQ8IZD2 1858 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 USP9XQ93008 2570 aaPredicted RBP7.81□□□□□ -1.16
LIG3-216ENST00000593099 A8MWV9 139 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 RNASE4P34096 147 aaKnown RBP7.81□□□□□ -1.16
LIG3-216ENST00000593099 TTC9CQ8N5M4 171 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 FMC1Q96HJ9 113 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 WFDC1Q9HC57 220 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 ASIPP42127 132 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 FOXE3Q13461 319 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 TMEM190Q8WZ59 177 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 ASCL2Q99929 193 aa7.81□□□□□ -1.16
LIG3-216ENST00000593099 MYO9AB2RTY4 2548 aa7.8□□□□□ -1.16
LIG3-216ENST00000593099 C9JCJ5 164 aa7.8□□□□□ -1.16
LIG3-216ENST00000593099 NDUFA4O00483 81 aa7.8□□□□□ -1.16
LIG3-216ENST00000593099 TRACP01848 142 aa7.8□□□□□ -1.16
LIG3-216ENST00000593099 SEC11AP67812 179 aa7.8□□□□□ -1.16
LIG3-216ENST00000593099 S100A7L2Q5SY68 101 aa7.8□□□□□ -1.16
LIG3-216ENST00000593099 MORN3Q6PF18 240 aaPredicted RBP7.8□□□□□ -1.16
LIG3-216ENST00000593099 INAFM1C9JVW0 142 aa7.8□□□□□ -1.16
LIG3-216ENST00000593099 KRTAP10-9P60411 292 aa7.8□□□□□ -1.16
LIG3-216ENST00000593099 ATRAIDQ6UW56 229 aa7.8□□□□□ -1.16
LIG3-216ENST00000593099 KCNS1Q96KK3 526 aa7.8□□□□□ -1.16
LIG3-216ENST00000593099 TMEM258P61165 79 aa7.8□□□□□ -1.16
LIG3-216ENST00000593099 CIARTQ8N365 385 aaPredicted RBP7.8□□□□□ -1.16
LIG3-216ENST00000593099 EPDR1Q9UM22 224 aa7.8□□□□□ -1.16
LIG3-216ENST00000593099 TNRC6BQ9UPQ9 1833 aaKnown RBP7.8□□□□□ -1.16
LIG3-216ENST00000593099 IGHV7-81A0A0B4J1V7 117 aa7.79□□□□□ -1.16
LIG3-216ENST00000593099 CLPSL1A2RUU4 121 aa7.79□□□□□ -1.16
LIG3-216ENST00000593099 FCN3O75636 299 aa7.79□□□□□ -1.16
LIG3-216ENST00000593099 IFITM1P13164 125 aa7.79□□□□□ -1.16
LIG3-216ENST00000593099 ATP5G3P48201 142 aa7.79□□□□□ -1.16
LIG3-216ENST00000593099 Q8N9W7 124 aa7.79□□□□□ -1.16
LIG3-216ENST00000593099 MBD6Q96DN6 1003 aa7.79□□□□□ -1.16
LIG3-216ENST00000593099 SDF2L1Q9HCN8 221 aa7.79□□□□□ -1.16
LIG3-216ENST00000593099 TCTEX1D4Q5JR98 221 aa7.79□□□□□ -1.16
LIG3-216ENST00000593099 C1QTNF4Q9BXJ3 329 aa7.79□□□□□ -1.16
LIG3-216ENST00000593099 SRSF2Q01130 221 aaKnown RBP7.79□□□□□ -1.16
LIG3-216ENST00000593099 CD300EQ496F6 205 aaPredicted RBP7.79□□□□□ -1.16
LIG3-216ENST00000593099 C1orf194Q5T5A4 169 aa7.79□□□□□ -1.16
LIG3-216ENST00000593099 FER1L6-AS1Q8NA97 138 aa7.79□□□□□ -1.16
LIG3-216ENST00000593099 CHD3Q12873 2000 aaKnown RBP7.79□□□□□ -1.16
LIG3-216ENST00000593099 FABP5P3A8MUU1 101 aa7.79□□□□□ -1.16
LIG3-216ENST00000593099 LY6G6DO95868 133 aa7.79□□□□□ -1.16
LIG3-216ENST00000593099 HTN3P15516 51 aa7.79□□□□□ -1.16
LIG3-216ENST00000593099 C1QL4Q86Z23 238 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms