RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, human

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN6-222	ENST00000543744	EBLN2	Q6P2I7	272 aa		13.8	□□□□□ -0.2
PTPN6-222	ENST00000543744	CLEC19A	Q6UXS0	136 aa		13.8	□□□□□ -0.2
PTPN6-222	ENST00000543744	EEF1AKMT3	Q96AZ1	226 aa		13.8	□□□□□ -0.2
PTPN6-222	ENST00000543744	PRR25	Q96S07	402 aa		13.8	□□□□□ -0.2
PTPN6-222	ENST00000543744	TMEM189	A5PLL7	270 aa		13.8	□□□□□ -0.2
PTPN6-222	ENST00000543744	SH2D1A	O60880	128 aa		13.8	□□□□□ -0.2
PTPN6-222	ENST00000543744	BTF3	P20290	206 aa	Known RBP	13.8	□□□□□ -0.2
PTPN6-222	ENST00000543744	IGFL4	Q6B9Z1	124 aa		13.8	□□□□□ -0.2
PTPN6-222	ENST00000543744	COX8C	Q7Z4L0	72 aa		13.8	□□□□□ -0.2
PTPN6-222	ENST00000543744	TMEM219	Q86XT9	240 aa		13.8	□□□□□ -0.2
PTPN6-222	ENST00000543744	CCDC140	Q96MF4	163 aa		13.8	□□□□□ -0.2
PTPN6-222	ENST00000543744	CCL19	Q99731	98 aa		13.8	□□□□□ -0.2
PTPN6-222	ENST00000543744	LINC00614	P0C842	121 aa		13.79	□□□□□ -0.2
PTPN6-222	ENST00000543744	CTRL	P40313	264 aa		13.79	□□□□□ -0.2
PTPN6-222	ENST00000543744	PMCHL1	Q16048	86 aa		13.79	□□□□□ -0.2
PTPN6-222	ENST00000543744	GATD1	Q8NB37	220 aa		13.79	□□□□□ -0.2
PTPN6-222	ENST00000543744	TRBV7-1	A0A0A6YYK4	115 aa		13.78	□□□□□ -0.2
PTPN6-222	ENST00000543744	IGHV1-69D	A0A0B4J2H0	117 aa		13.78	□□□□□ -0.2
PTPN6-222	ENST00000543744	C2orf70	A6NJV1	201 aa		13.78	□□□□□ -0.2
PTPN6-222	ENST00000543744	BUB3	O43684	328 aa		13.78	□□□□□ -0.2
PTPN6-222	ENST00000543744	IGHV1-69	P01742	117 aa		13.78	□□□□□ -0.2
PTPN6-222	ENST00000543744	IGHG4	P01861	327 aa		13.78	□□□□□ -0.2
PTPN6-222	ENST00000543744	LCN12	Q6JVE5	192 aa		13.78	□□□□□ -0.2
PTPN6-222	ENST00000543744	VGLL1	Q99990	258 aa		13.78	□□□□□ -0.2
PTPN6-222	ENST00000543744	MOB4	Q9Y3A3	225 aa		13.78	□□□□□ -0.2
PTPN6-222	ENST00000543744	TMSB15B	A0A087X1C1	80 aa		13.78	□□□□□ -0.2
PTPN6-222	ENST00000543744	IGHV4-61	A0A0C4DH41	118 aa		13.78	□□□□□ -0.2
PTPN6-222	ENST00000543744	HLA-DMB	P28068	263 aa		13.78	□□□□□ -0.2
PTPN6-222	ENST00000543744	IGHV1-24	A0A0C4DH33	117 aa		13.77	□□□□□ -0.21
PTPN6-222	ENST00000543744	MRPL52	Q86TS9	123 aa	Known RBP	13.77	□□□□□ -0.21
PTPN6-222	ENST00000543744		Q8TAT8	98 aa		13.77	□□□□□ -0.21
PTPN6-222	ENST00000543744		A0A087X0K7	114 aa		13.76	□□□□□ -0.21
PTPN6-222	ENST00000543744	LYZL1	Q6UWQ5	148 aa		13.76	□□□□□ -0.21
PTPN6-222	ENST00000543744	BRD3OS	Q6XYD6	125 aa		13.76	□□□□□ -0.21
PTPN6-222	ENST00000543744	ATOH7	Q8N100	152 aa		13.76	□□□□□ -0.21
PTPN6-222	ENST00000543744	CLEC5A	Q9NY25	188 aa		13.76	□□□□□ -0.21
PTPN6-222	ENST00000543744	TRAV41	A0A0B4J266	112 aa		13.76	□□□□□ -0.21
PTPN6-222	ENST00000543744	CLPSL1	A2RUU4	121 aa		13.76	□□□□□ -0.21
PTPN6-222	ENST00000543744	BMI1	P35226	326 aa		13.76	□□□□□ -0.21
PTPN6-222	ENST00000543744	ATP5G2	Q06055	141 aa		13.76	□□□□□ -0.21
PTPN6-222	ENST00000543744	C10orf105	Q8TEF2	133 aa		13.76	□□□□□ -0.21
PTPN6-222	ENST00000543744	TMEM70	Q9BUB7	260 aa		13.76	□□□□□ -0.21
PTPN6-222	ENST00000543744	TRAV40	A0A0B4J280	105 aa		13.75	□□□□□ -0.21
PTPN6-222	ENST00000543744		M0QZK8	103 aa		13.75	□□□□□ -0.21
PTPN6-222	ENST00000543744	DMRTA1	Q5VZB9	504 aa		13.75	□□□□□ -0.21
PTPN6-222	ENST00000543744	PIFO	Q8TCI5	191 aa		13.75	□□□□□ -0.21
PTPN6-222	ENST00000543744	IGHV3-66	A0A0C4DH42	116 aa		13.74	□□□□□ -0.21
PTPN6-222	ENST00000543744	NDUFS8	O00217	210 aa		13.74	□□□□□ -0.21
PTPN6-222	ENST00000543744	LEPROTL1	O95214	131 aa		13.74	□□□□□ -0.21
PTPN6-222	ENST00000543744	RNF224	P0DH78	156 aa		13.74	□□□□□ -0.21
PTPN6-222	ENST00000543744	ZNF138	P52744	262 aa		13.74	□□□□□ -0.21
PTPN6-222	ENST00000543744	CLEC2A	Q6UVW9	174 aa		13.74	□□□□□ -0.21
PTPN6-222	ENST00000543744	ZNF493	Q6ZR52	646 aa		13.74	□□□□□ -0.21
PTPN6-222	ENST00000543744	KLHDC1	Q8N7A1	406 aa		13.74	□□□□□ -0.21
PTPN6-222	ENST00000543744	METTL26	Q96S19	204 aa		13.74	□□□□□ -0.21
PTPN6-222	ENST00000543744	SPTAN1	Q13813	2472 aa	Known RBP	13.74	□□□□□ -0.21
PTPN6-222	ENST00000543744	RPS20	P60866	119 aa	Known RBP	13.74	□□□□□ -0.21
PTPN6-222	ENST00000543744	NUTF2	P61970	127 aa	Known RBP	13.74	□□□□□ -0.21
PTPN6-222	ENST00000543744	CYB5R2	Q6BCY4	276 aa		13.74	□□□□□ -0.21
PTPN6-222	ENST00000543744	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		13.74	□□□□□ -0.21
PTPN6-222	ENST00000543744	SLC50A1	Q9BRV3	221 aa		13.74	□□□□□ -0.21
PTPN6-222	ENST00000543744	UQCR10	Q9UDW1	63 aa		13.74	□□□□□ -0.21
PTPN6-222	ENST00000543744	CACNA1B	Q00975	2339 aa		13.74	□□□□□ -0.21
PTPN6-222	ENST00000543744	CSN3	P07498	182 aa		13.73	□□□□□ -0.21
PTPN6-222	ENST00000543744	OR5AL1	P0C617	328 aa		13.73	□□□□□ -0.21
PTPN6-222	ENST00000543744	IGLC3	P0DOY3	106 aa		13.73	□□□□□ -0.21
PTPN6-222	ENST00000543744	ZNF80	P51504	273 aa	Predicted RBP	13.73	□□□□□ -0.21
PTPN6-222	ENST00000543744	SST	P61278	116 aa		13.73	□□□□□ -0.21
PTPN6-222	ENST00000543744	MEGF9	Q9H1U4	602 aa		13.73	□□□□□ -0.21
PTPN6-222	ENST00000543744	PIEZO1	Q92508	2521 aa		13.73	□□□□□ -0.21
PTPN6-222	ENST00000543744	IGHV3OR16-13	A0A075B7E8	117 aa		13.73	□□□□□ -0.21
PTPN6-222	ENST00000543744	IGHV3-74	A0A0B4J1X5	117 aa		13.73	□□□□□ -0.21
PTPN6-222	ENST00000543744	ATP5J2	P56134	94 aa		13.73	□□□□□ -0.21
PTPN6-222	ENST00000543744	RNF182	Q8N6D2	247 aa		13.73	□□□□□ -0.21
PTPN6-222	ENST00000543744	LINC00527	Q9UJ94	153 aa		13.73	□□□□□ -0.21
PTPN6-222	ENST00000543744	CFAP46	Q8IYW2	2715 aa		13.72	□□□□□ -0.21
PTPN6-222	ENST00000543744	TRAV9-2	A0A087WT02	112 aa		13.72	□□□□□ -0.21
PTPN6-222	ENST00000543744	FAM223B	A6NKX1	122 aa		13.72	□□□□□ -0.21
PTPN6-222	ENST00000543744	PRAC2	D3DTV9	90 aa		13.72	□□□□□ -0.21
PTPN6-222	ENST00000543744	C19orf54	Q5BKX5	351 aa		13.72	□□□□□ -0.21
PTPN6-222	ENST00000543744	FAM223A	Q8IWN6	122 aa		13.72	□□□□□ -0.21
PTPN6-222	ENST00000543744	CACNA1A	O00555	2505 aa		13.72	□□□□□ -0.21
PTPN6-222	ENST00000543744	ABCA2	Q9BZC7	2435 aa		13.72	□□□□□ -0.21
PTPN6-222	ENST00000543744	TMEM213	A2RRL7	107 aa		13.71	□□□□□ -0.21
PTPN6-222	ENST00000543744	RBAKDN	A6NC62	111 aa		13.71	□□□□□ -0.21
PTPN6-222	ENST00000543744	CRX	O43186	299 aa	Predicted RBP	13.71	□□□□□ -0.21
PTPN6-222	ENST00000543744	ZNF207	O43670	478 aa	Known RBP	13.71	□□□□□ -0.21
PTPN6-222	ENST00000543744	CRIP2	P52943	208 aa	Predicted RBP	13.71	□□□□□ -0.21
PTPN6-222	ENST00000543744	ERCC8	Q13216	396 aa		13.71	□□□□□ -0.21
PTPN6-222	ENST00000543744	MAJIN	Q3KP22	176 aa		13.71	□□□□□ -0.21
PTPN6-222	ENST00000543744	ATP6V0B	Q99437	205 aa		13.71	□□□□□ -0.21
PTPN6-222	ENST00000543744	IGHV3-49	A0A0A0MS15	119 aa		13.71	□□□□□ -0.22
PTPN6-222	ENST00000543744	SYS1-DBNDD2	H3BUS1	97 aa		13.71	□□□□□ -0.22
PTPN6-222	ENST00000543744	TRGV3	P03979	118 aa		13.71	□□□□□ -0.22
PTPN6-222	ENST00000543744	IGHV4-38-2	P0DP08	117 aa		13.71	□□□□□ -0.22
PTPN6-222	ENST00000543744	LINC00173	Q6ZV60	143 aa		13.71	□□□□□ -0.22
PTPN6-222	ENST00000543744	SPATA12	Q7Z6I5	190 aa		13.71	□□□□□ -0.22
PTPN6-222	ENST00000543744	FER1L6-AS1	Q8NA97	138 aa		13.71	□□□□□ -0.22
PTPN6-222	ENST00000543744	FABP5P3	A8MUU1	101 aa		13.7	□□□□□ -0.22
PTPN6-222	ENST00000543744	ORM1	P02763	201 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms