RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 CCDC140Q96MF4 163 aa11.9□□□□□ -0.5
USH1C-207ENST00000527720 ABCA2Q9BZC7 2435 aa11.9□□□□□ -0.5
USH1C-207ENST00000527720 A0A1B0GV90 55 aa11.9□□□□□ -0.5
USH1C-207ENST00000527720 TMEM189A5PLL7 270 aa11.9□□□□□ -0.5
USH1C-207ENST00000527720 RELQ04864 619 aaPredicted RBP11.9□□□□□ -0.5
USH1C-207ENST00000527720 ZNF493Q6ZR52 646 aa11.9□□□□□ -0.5
USH1C-207ENST00000527720 CCL19Q99731 98 aa11.9□□□□□ -0.5
USH1C-207ENST00000527720 SNHG12Q9BXW3 62 aa11.9□□□□□ -0.5
USH1C-207ENST00000527720 MEGF9Q9H1U4 602 aa11.9□□□□□ -0.5
USH1C-207ENST00000527720 IGKV2-40A0A087WW87 121 aaPredicted RBP11.89□□□□□ -0.51
USH1C-207ENST00000527720 G3V318 75 aa11.89□□□□□ -0.51
USH1C-207ENST00000527720 SH2D1AO60880 128 aa11.89□□□□□ -0.51
USH1C-207ENST00000527720 IGKV2D-40P01614 121 aaPredicted RBP11.89□□□□□ -0.51
USH1C-207ENST00000527720 IGHG4P01861 327 aa11.89□□□□□ -0.51
USH1C-207ENST00000527720 LINC00614P0C842 121 aa11.89□□□□□ -0.51
USH1C-207ENST00000527720 RPS20P60866 119 aaKnown RBP11.89□□□□□ -0.51
USH1C-207ENST00000527720 SRSF2Q01130 221 aaKnown RBP11.89□□□□□ -0.51
USH1C-207ENST00000527720 ZNF705AQ6ZN79 300 aaPredicted RBP11.89□□□□□ -0.51
USH1C-207ENST00000527720 C10orf105Q8TEF2 133 aa11.89□□□□□ -0.51
USH1C-207ENST00000527720 ASCL2Q99929 193 aa11.89□□□□□ -0.51
USH1C-207ENST00000527720 SLC50A1Q9BRV3 221 aa11.89□□□□□ -0.51
USH1C-207ENST00000527720 C2orf70A6NJV1 201 aa11.89□□□□□ -0.51
USH1C-207ENST00000527720 M0QZK8 103 aa11.89□□□□□ -0.51
USH1C-207ENST00000527720 EREGO14944 169 aa11.89□□□□□ -0.51
USH1C-207ENST00000527720 BMI1P35226 326 aa11.89□□□□□ -0.51
USH1C-207ENST00000527720 RBAKDNA6NC62 111 aa11.88□□□□□ -0.51
USH1C-207ENST00000527720 LINC01548A6NM66 108 aa11.88□□□□□ -0.51
USH1C-207ENST00000527720 SPATA45Q537H7 98 aa11.88□□□□□ -0.51
USH1C-207ENST00000527720 C19orf54Q5BKX5 351 aa11.88□□□□□ -0.51
USH1C-207ENST00000527720 EBLN2Q6P2I7 272 aa11.88□□□□□ -0.51
USH1C-207ENST00000527720 CLEC19AQ6UXS0 136 aa11.88□□□□□ -0.51
USH1C-207ENST00000527720 IGHV4-61A0A0C4DH41 118 aa11.88□□□□□ -0.51
USH1C-207ENST00000527720 FAM223BA6NKX1 122 aa11.88□□□□□ -0.51
USH1C-207ENST00000527720 OR5AL1P0C617 328 aa11.88□□□□□ -0.51
USH1C-207ENST00000527720 LCN12Q6JVE5 192 aa11.88□□□□□ -0.51
USH1C-207ENST00000527720 FAM223AQ8IWN6 122 aa11.88□□□□□ -0.51
USH1C-207ENST00000527720 AKAP6Q13023 2319 aa11.87□□□□□ -0.51
USH1C-207ENST00000527720 TRAV41A0A0B4J266 112 aa11.87□□□□□ -0.51
USH1C-207ENST00000527720 IGHV3-35A0A0C4DH35 117 aa11.87□□□□□ -0.51
USH1C-207ENST00000527720 CLPSL1A2RUU4 121 aa11.87□□□□□ -0.51
USH1C-207ENST00000527720 ATP5G2Q06055 141 aa11.87□□□□□ -0.51
USH1C-207ENST00000527720 KLHDC1Q8N7A1 406 aa11.87□□□□□ -0.51
USH1C-207ENST00000527720 PIFOQ8TCI5 191 aa11.87□□□□□ -0.51
USH1C-207ENST00000527720 IGHV1-24A0A0C4DH33 117 aa11.86□□□□□ -0.51
USH1C-207ENST00000527720 C20orf202A1L168 122 aa11.86□□□□□ -0.51
USH1C-207ENST00000527720 CRXO43186 299 aaPredicted RBP11.86□□□□□ -0.51
USH1C-207ENST00000527720 CLEC2AQ6UVW9 174 aa11.86□□□□□ -0.51
USH1C-207ENST00000527720 METTL26Q96S19 204 aa11.86□□□□□ -0.51
USH1C-207ENST00000527720 TMEM70Q9BUB7 260 aa11.86□□□□□ -0.51
USH1C-207ENST00000527720 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.86□□□□□ -0.51
USH1C-207ENST00000527720 VGLL1Q99990 258 aa11.86□□□□□ -0.51
USH1C-207ENST00000527720 ASH1LQ9NR48 2969 aaKnown RBP11.86□□□□□ -0.51
USH1C-207ENST00000527720 IGHV3OR16-8A0A075B7F1 116 aa11.85□□□□□ -0.51
USH1C-207ENST00000527720 TRAV40A0A0B4J280 105 aa11.85□□□□□ -0.51
USH1C-207ENST00000527720 PRR31Q5SQ13 230 aa11.85□□□□□ -0.51
USH1C-207ENST00000527720 LYZL1Q6UWQ5 148 aa11.85□□□□□ -0.51
USH1C-207ENST00000527720 TMEM219Q86XT9 240 aa11.85□□□□□ -0.51
USH1C-207ENST00000527720 MRPL53Q96EL3 112 aaKnown RBP11.85□□□□□ -0.51
USH1C-207ENST00000527720 UQCR10Q9UDW1 63 aa11.85□□□□□ -0.51
USH1C-207ENST00000527720 U3KQE9 123 aa11.85□□□□□ -0.51
USH1C-207ENST00000527720 LEPROTL1O95214 131 aa11.85□□□□□ -0.51
USH1C-207ENST00000527720 BRI3O95415 125 aa11.85□□□□□ -0.51
USH1C-207ENST00000527720 PRB4P10163 310 aaPredicted RBP11.85□□□□□ -0.51
USH1C-207ENST00000527720 NUTF2P61970 127 aaKnown RBP11.85□□□□□ -0.51
USH1C-207ENST00000527720 PKD1L2Q7Z442 2459 aa11.85□□□□□ -0.51
USH1C-207ENST00000527720 HLA-DMBP28068 263 aa11.84□□□□□ -0.51
USH1C-207ENST00000527720 TPPP3Q9BW30 176 aa11.84□□□□□ -0.51
USH1C-207ENST00000527720 CSMD1Q96PZ7 3565 aa11.84□□□□□ -0.51
USH1C-207ENST00000527720 M0QZ24 198 aa11.84□□□□□ -0.51
USH1C-207ENST00000527720 IGF1P05019 195 aa11.84□□□□□ -0.51
USH1C-207ENST00000527720 IGLC3P0DOY3 106 aa11.84□□□□□ -0.51
USH1C-207ENST00000527720 ANKRD39Q53RE8 183 aa11.84□□□□□ -0.51
USH1C-207ENST00000527720 IGFL4Q6B9Z1 124 aa11.84□□□□□ -0.51
USH1C-207ENST00000527720 CLEC5AQ9NY25 188 aa11.84□□□□□ -0.51
USH1C-207ENST00000527720 IGHV3OR16-10A0A075B7F0 116 aa11.83□□□□□ -0.52
USH1C-207ENST00000527720 TRAV9-2A0A087WT02 112 aa11.83□□□□□ -0.52
USH1C-207ENST00000527720 FABP5P3A8MUU1 101 aa11.83□□□□□ -0.52
USH1C-207ENST00000527720 H3BUA1 57 aa11.83□□□□□ -0.52
USH1C-207ENST00000527720 ATP5J2P56134 94 aa11.83□□□□□ -0.52
USH1C-207ENST00000527720 BRD3OSQ6XYD6 125 aa11.83□□□□□ -0.52
USH1C-207ENST00000527720 Q8TAT8 98 aa11.83□□□□□ -0.52
USH1C-207ENST00000527720 HIF1ANQ9NWT6 349 aa11.83□□□□□ -0.52
USH1C-207ENST00000527720 CACNA1AO00555 2505 aa11.83□□□□□ -0.52
USH1C-207ENST00000527720 IGLC6P0CF74 106 aa11.83□□□□□ -0.52
USH1C-207ENST00000527720 ZNF80P51504 273 aaPredicted RBP11.83□□□□□ -0.52
USH1C-207ENST00000527720 FAM104BQ5XKR9 115 aa11.83□□□□□ -0.52
USH1C-207ENST00000527720 FER1L6-AS1Q8NA97 138 aa11.83□□□□□ -0.52
USH1C-207ENST00000527720 U3KQK5 164 aa11.83□□□□□ -0.52
USH1C-207ENST00000527720 CACNA1BQ00975 2339 aa11.82□□□□□ -0.52
USH1C-207ENST00000527720 TMSB15BA0A087X1C1 80 aa11.82□□□□□ -0.52
USH1C-207ENST00000527720 SYS1-DBNDD2H3BUS1 97 aa11.82□□□□□ -0.52
USH1C-207ENST00000527720 HSPB8Q9UJY1 196 aa11.82□□□□□ -0.52
USH1C-207ENST00000527720 TRGV3P03979 118 aa11.81□□□□□ -0.52
USH1C-207ENST00000527720 AP5S1Q9NUS5 200 aa11.81□□□□□ -0.52
USH1C-207ENST00000527720 IGHG2P01859 326 aa11.81□□□□□ -0.52
USH1C-207ENST00000527720 MSMBP08118 114 aa11.81□□□□□ -0.52
USH1C-207ENST00000527720 LINC01559Q495D7 138 aa11.81□□□□□ -0.52
USH1C-207ENST00000527720 IGHV4-30-2A0A087WSY4 118 aa11.8□□□□□ -0.52
USH1C-207ENST00000527720 IGHV4-38-2P0DP08 117 aa11.8□□□□□ -0.52
USH1C-207ENST00000527720 MAP1LC3CQ9BXW4 147 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms