RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 JKAMPQ9P055 326 aa7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 DCHS2Q6V1P9 2916 aa7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 FAM90A27PA6NNH2 459 aa7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 NCBP2LA6PVI3 153 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 NPIPB5A8MRT5 1133 aa7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 NBR2O15453 112 aa7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 PSG9Q00887 426 aa7.27□□□□□ -1.25
LIMCH1-215ENST00000512632 ZNF672Q499Z4 452 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-215ENST00000512632 MS4A6AQ9H2W1 248 aa7.26□□□□□ -1.25
LIMCH1-215ENST00000512632 DPM3Q9P2X0 92 aa7.26□□□□□ -1.25
LIMCH1-215ENST00000512632 A0A096LNJ9 63 aa7.26□□□□□ -1.25
LIMCH1-215ENST00000512632 TRAV8-6A0A0B4J262 113 aa7.26□□□□□ -1.25
LIMCH1-215ENST00000512632 SH2D1AO60880 128 aa7.26□□□□□ -1.25
LIMCH1-215ENST00000512632 MRPS12O15235 138 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-215ENST00000512632 CACNG7P62955 275 aa7.26□□□□□ -1.25
LIMCH1-215ENST00000512632 HIST1H1AQ02539 215 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-215ENST00000512632 PAX2Q02962 417 aa7.26□□□□□ -1.25
LIMCH1-215ENST00000512632 COX8AP10176 69 aa7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 C2orf91Q6ZV80 131 aa7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 FANCD2OSQ96PS1 177 aa7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 ASH1LQ9NR48 2969 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 LY6LH3BQJ8 138 aa7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 RHOGP84095 191 aa7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 MSRB1Q9NZV6 116 aa7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 K7EP13 123 aa7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 MFAP4P55083 255 aa7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 TWIST1Q15672 202 aa7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 MRPL51Q4U2R6 128 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 FAM104BQ5XKR9 115 aa7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 C18orf15Q96N68 181 aa7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 EGR2P11161 476 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 PPIFP30405 207 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 CKS2P33552 79 aa7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 ORMDL3Q8N138 153 aa7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 PIP4P2Q8N4L2 257 aa7.25□□□□□ -1.25
LIMCH1-215ENST00000512632 CD5LO43866 347 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 ZNF80P51504 273 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 NDPQ00604 133 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 LYPD1Q8N2G4 141 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 VGLL1Q99990 258 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 C7orf71A4D174 169 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 TMEM97Q5BJF2 176 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 IGHV3OR16-13A0A075B7E8 117 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 IGHV3-74A0A0B4J1X5 117 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 TRBV6-1A0A0K0K1D8 114 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 WI2-2373I1.2A0A1W2PRP0 233 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 NPYP01303 97 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 C21orf62Q9NYP8 219 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 SVEP1Q4LDE5 3571 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 IGF2RP11717 2491 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 GAS8-AS1O95177 125 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 ORM1P02763 201 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 C5orf64Q2M2E5 130 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 PRSS57Q6UWY2 283 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 VPS25Q9BRG1 176 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 CST9LQ9H4G1 147 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 THYN1Q9P016 225 aa7.24□□□□□ -1.25
LIMCH1-215ENST00000512632 PRR25Q96S07 402 aa7.23□□□□□ -1.25
LIMCH1-215ENST00000512632 RNF5Q99942 180 aa7.23□□□□□ -1.25
LIMCH1-215ENST00000512632 NMUP48645 174 aa7.23□□□□□ -1.25
LIMCH1-215ENST00000512632 Q6AWC8 147 aa7.23□□□□□ -1.25
LIMCH1-215ENST00000512632 CFHR4Q92496 578 aa7.23□□□□□ -1.25
LIMCH1-215ENST00000512632 RAB37Q96AX2 223 aa7.23□□□□□ -1.25
LIMCH1-215ENST00000512632 RABAC1Q9UI14 185 aa7.23□□□□□ -1.25
LIMCH1-215ENST00000512632 IGHV3-66A0A0C4DH42 116 aa7.23□□□□□ -1.25
LIMCH1-215ENST00000512632 F8W735 103 aaPredicted RBP7.23□□□□□ -1.25
LIMCH1-215ENST00000512632 BSNQ9UPA5 3926 aa7.23□□□□□ -1.25
LIMCH1-215ENST00000512632 A0A1B0GW15 77 aa7.23□□□□□ -1.25
LIMCH1-215ENST00000512632 TM4SF20Q53R12 229 aa7.23□□□□□ -1.25
LIMCH1-215ENST00000512632 DYNAPQ8N1N2 210 aa7.23□□□□□ -1.25
LIMCH1-215ENST00000512632 FER1L6-AS1Q8NA97 138 aa7.23□□□□□ -1.25
LIMCH1-215ENST00000512632 IGLV11-55A0A075B6I3 123 aa7.22□□□□□ -1.25
LIMCH1-215ENST00000512632 ZNF493Q6ZR52 646 aa7.22□□□□□ -1.25
LIMCH1-215ENST00000512632 PCP2Q8IVA1 136 aa7.22□□□□□ -1.25
LIMCH1-215ENST00000512632 IFI27L1Q96BM0 104 aa7.22□□□□□ -1.25
LIMCH1-215ENST00000512632 GAGE12BA1L429 117 aa7.22□□□□□ -1.25
LIMCH1-215ENST00000512632 CDKN1BP46527 198 aa7.22□□□□□ -1.25
LIMCH1-215ENST00000512632 ERCC8Q13216 396 aa7.22□□□□□ -1.25
LIMCH1-215ENST00000512632 ARPC1AQ92747 370 aa7.22□□□□□ -1.25
LIMCH1-215ENST00000512632 RAB1BQ9H0U4 201 aa7.22□□□□□ -1.25
LIMCH1-215ENST00000512632 DKK2Q9UBU2 259 aa7.22□□□□□ -1.25
LIMCH1-215ENST00000512632 HBDP02042 147 aa7.22□□□□□ -1.25
LIMCH1-215ENST00000512632 RPL7P18124 248 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-215ENST00000512632 EVI2AP22794 236 aa7.22□□□□□ -1.25
LIMCH1-215ENST00000512632 IGHV3-49A0A0A0MS15 119 aa7.21□□□□□ -1.25
LIMCH1-215ENST00000512632 CEACAM3P40198 252 aa7.21□□□□□ -1.25
LIMCH1-215ENST00000512632 OCIAD2Q56VL3 154 aa7.21□□□□□ -1.25
LIMCH1-215ENST00000512632 AP1S3Q96PC3 154 aa7.21□□□□□ -1.25
LIMCH1-215ENST00000512632 SRSF8Q9BRL6 282 aaKnown RBP7.21□□□□□ -1.25
LIMCH1-215ENST00000512632 PEF1Q9UBV8 284 aaKnown RBP7.21□□□□□ -1.25
LIMCH1-215ENST00000512632 GAGE10A6NGK3 116 aa7.21□□□□□ -1.25
LIMCH1-215ENST00000512632 FGF6P10767 208 aa7.21□□□□□ -1.25
LIMCH1-215ENST00000512632 GATA1P15976 413 aaPredicted RBP7.21□□□□□ -1.25
LIMCH1-215ENST00000512632 SAPCD1Q5SSQ6 148 aa7.21□□□□□ -1.25
LIMCH1-215ENST00000512632 ZNF562Q6V9R5 426 aa7.21□□□□□ -1.25
LIMCH1-215ENST00000512632 TTTY13Q9BZ97 58 aa7.21□□□□□ -1.25
LIMCH1-215ENST00000512632 PRAC2D3DTV9 90 aa7.21□□□□□ -1.26
LIMCH1-215ENST00000512632 H3BUT2 72 aa7.21□□□□□ -1.26
LIMCH1-215ENST00000512632 PDE6HQ13956 83 aa7.21□□□□□ -1.26
LIMCH1-215ENST00000512632 GATD1Q8NB37 220 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms