RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 NOTCH3Q9UM47 2321 aa13.82□□□□□ -0.2
PHRF1-202ENST00000413872 TRBV19A0A075B6N1 114 aa13.82□□□□□ -0.2
PHRF1-202ENST00000413872 RASL10AQ92737 203 aa13.82□□□□□ -0.2
PHRF1-202ENST00000413872 ST6GALNAC6Q969X2 333 aa13.82□□□□□ -0.2
PHRF1-202ENST00000413872 IGHV3-73A0A0B4J1V6 119 aa13.81□□□□□ -0.2
PHRF1-202ENST00000413872 IGHV3-53P01767 116 aa13.81□□□□□ -0.2
PHRF1-202ENST00000413872 PRB4P10163 310 aaPredicted RBP13.81□□□□□ -0.2
PHRF1-202ENST00000413872 APOC4P55056 127 aa13.81□□□□□ -0.2
PHRF1-202ENST00000413872 TMEM14CQ9P0S9 112 aa13.81□□□□□ -0.2
PHRF1-202ENST00000413872 ZNF815PA8K554 130 aa13.81□□□□□ -0.2
PHRF1-202ENST00000413872 MS4A6AQ9H2W1 248 aa13.81□□□□□ -0.2
PHRF1-202ENST00000413872 DAZAP2Q15038 168 aaPredicted RBP13.81□□□□□ -0.2
PHRF1-202ENST00000413872 MMP23AO75900 390 aa13.8□□□□□ -0.2
PHRF1-202ENST00000413872 GRNP28799 593 aaKnown RBP13.8□□□□□ -0.2
PHRF1-202ENST00000413872 TECTAO75443 2155 aa13.8□□□□□ -0.2
PHRF1-202ENST00000413872 BDP1A6H8Y1 2624 aa13.8□□□□□ -0.2
PHRF1-202ENST00000413872 A0A1B0GV90 55 aa13.8□□□□□ -0.2
PHRF1-202ENST00000413872 WT1-ASQ06250 92 aa13.8□□□□□ -0.2
PHRF1-202ENST00000413872 ARMS2P0C7Q2 107 aa13.8□□□□□ -0.2
PHRF1-202ENST00000413872 ERCC8Q13216 396 aa13.8□□□□□ -0.2
PHRF1-202ENST00000413872 C5orf30Q96GV9 206 aa13.8□□□□□ -0.2
PHRF1-202ENST00000413872 SPOCK3Q9BQ16 436 aa13.8□□□□□ -0.2
PHRF1-202ENST00000413872 HOXA3O43365 443 aaPredicted RBP13.8□□□□□ -0.2
PHRF1-202ENST00000413872 PFN1P07737 140 aaKnown RBP13.8□□□□□ -0.2
PHRF1-202ENST00000413872 CT83Q5H943 113 aa13.8□□□□□ -0.2
PHRF1-202ENST00000413872 OR11H6Q8NGC7 330 aa13.8□□□□□ -0.2
PHRF1-202ENST00000413872 LIME1Q9H400 295 aa13.8□□□□□ -0.2
PHRF1-202ENST00000413872 FAM208BQ5VWN6 2430 aa13.8□□□□□ -0.2
PHRF1-202ENST00000413872 IGKV1-39P01597 117 aa13.79□□□□□ -0.2
PHRF1-202ENST00000413872 IGKV1D-39P04432 117 aa13.79□□□□□ -0.2
PHRF1-202ENST00000413872 ZNF134P52741 427 aa13.79□□□□□ -0.2
PHRF1-202ENST00000413872 TRPT1Q86TN4 253 aaKnown RBP13.79□□□□□ -0.2
PHRF1-202ENST00000413872 CSTL1Q9H114 145 aa13.79□□□□□ -0.2
PHRF1-202ENST00000413872 TMEM238C9JI98 176 aa13.79□□□□□ -0.2
PHRF1-202ENST00000413872 DEFB130BP0DP73 79 aa13.79□□□□□ -0.2
PHRF1-202ENST00000413872 DEFB130AP0DP74 79 aa13.79□□□□□ -0.2
PHRF1-202ENST00000413872 HOXB4P17483 251 aaPredicted RBP13.79□□□□□ -0.2
PHRF1-202ENST00000413872 H3BRN7 92 aa13.78□□□□□ -0.2
PHRF1-202ENST00000413872 MALRD1Q5VYJ5 2156 aa13.78□□□□□ -0.2
PHRF1-202ENST00000413872 LINC00158P58513 81 aa13.78□□□□□ -0.2
PHRF1-202ENST00000413872 CD300EQ496F6 205 aaPredicted RBP13.78□□□□□ -0.2
PHRF1-202ENST00000413872 CTSZQ9UBR2 303 aa13.78□□□□□ -0.2
PHRF1-202ENST00000413872 LSM4Q9Y4Z0 139 aaKnown RBP13.78□□□□□ -0.2
PHRF1-202ENST00000413872 PAX9P55771 341 aa13.78□□□□□ -0.2
PHRF1-202ENST00000413872 C8orf86Q6ZUL3 223 aa13.78□□□□□ -0.2
PHRF1-202ENST00000413872 C11orf53Q8IXP5 236 aa13.78□□□□□ -0.2
PHRF1-202ENST00000413872 XCL2Q9UBD3 114 aa13.78□□□□□ -0.2
PHRF1-202ENST00000413872 DOCK10Q96BY6 2186 aa13.78□□□□□ -0.2
PHRF1-202ENST00000413872 DOCK9Q9BZ29 2069 aa13.78□□□□□ -0.2
PHRF1-202ENST00000413872 PLXND1Q9Y4D7 1925 aa13.78□□□□□ -0.2
PHRF1-202ENST00000413872 CXCL1P09341 107 aa13.77□□□□□ -0.2
PHRF1-202ENST00000413872 PSCAO43653 123 aa13.77□□□□□ -0.2
PHRF1-202ENST00000413872 LHBP01229 141 aa13.77□□□□□ -0.2
PHRF1-202ENST00000413872 THAP8Q8NA92 274 aa13.77□□□□□ -0.2
PHRF1-202ENST00000413872 GSN-AS1Q9NRJ2 163 aa13.77□□□□□ -0.2
PHRF1-202ENST00000413872 PRO3102Q9H379 93 aa13.77□□□□□ -0.21
PHRF1-202ENST00000413872 LOC105371267A0A1B0GV96 52 aa13.77□□□□□ -0.21
PHRF1-202ENST00000413872 NDUFS7O75251 213 aa13.77□□□□□ -0.21
PHRF1-202ENST00000413872 DAD1P61803 113 aa13.77□□□□□ -0.21
PHRF1-202ENST00000413872 DEFB112Q30KQ8 113 aa13.77□□□□□ -0.21
PHRF1-202ENST00000413872 TRAV2A0A0B4J234 112 aa13.77□□□□□ -0.21
PHRF1-202ENST00000413872 COLCA2A8K830 154 aa13.77□□□□□ -0.21
PHRF1-202ENST00000413872 A8MWV9 139 aa13.77□□□□□ -0.21
PHRF1-202ENST00000413872 IGHV7-4-1A0A0J9YVY3 117 aa13.76□□□□□ -0.21
PHRF1-202ENST00000413872 SS18Q15532 418 aa13.76□□□□□ -0.21
PHRF1-202ENST00000413872 KRTAP27-1Q3LI81 207 aa13.76□□□□□ -0.21
PHRF1-202ENST00000413872 IGHV1OR15-1A0A075B7D0 117 aa13.76□□□□□ -0.21
PHRF1-202ENST00000413872 CDKN1BP46527 198 aa13.76□□□□□ -0.21
PHRF1-202ENST00000413872 ADORA2A-AS1P86434 159 aa13.76□□□□□ -0.21
PHRF1-202ENST00000413872 SPINK13Q1W4C9 94 aa13.76□□□□□ -0.21
PHRF1-202ENST00000413872 OR2K2Q8NGT1 345 aa13.76□□□□□ -0.21
PHRF1-202ENST00000413872 C1orf159Q96HA4 380 aa13.76□□□□□ -0.21
PHRF1-202ENST00000413872 TSSC4Q9Y5U2 329 aaPredicted RBP13.76□□□□□ -0.21
PHRF1-202ENST00000413872 TPSG1Q9NRR2 321 aa13.76□□□□□ -0.21
PHRF1-202ENST00000413872 A0A1B0GUS0 222 aa13.75□□□□□ -0.21
PHRF1-202ENST00000413872 IGLC1P0CG04 106 aa13.75□□□□□ -0.21
PHRF1-202ENST00000413872 RIPPLY3P57055 190 aa13.75□□□□□ -0.21
PHRF1-202ENST00000413872 S100A7L2Q5SY68 101 aa13.75□□□□□ -0.21
PHRF1-202ENST00000413872 Q6ZSR3 168 aa13.75□□□□□ -0.21
PHRF1-202ENST00000413872 A0A1B0GWB2 263 aa13.75□□□□□ -0.21
PHRF1-202ENST00000413872 FBXL19-AS1Q494R0 122 aa13.75□□□□□ -0.21
PHRF1-202ENST00000413872 SPCS1Q9Y6A9 102 aa13.75□□□□□ -0.21
PHRF1-202ENST00000413872 UBE2CO00762 179 aa13.75□□□□□ -0.21
PHRF1-202ENST00000413872 HIST1H2BLQ99880 126 aa13.75□□□□□ -0.21
PHRF1-202ENST00000413872 LTBP2Q14767 1821 aa13.74□□□□□ -0.21
PHRF1-202ENST00000413872 A0A087WWL8 130 aa13.74□□□□□ -0.21
PHRF1-202ENST00000413872 IGHV4-61A0A0C4DH41 118 aa13.74□□□□□ -0.21
PHRF1-202ENST00000413872 NHP2Q9NX24 153 aaKnown RBP13.74□□□□□ -0.21
PHRF1-202ENST00000413872 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.74□□□□□ -0.21
PHRF1-202ENST00000413872 TDGF1P3P51864 188 aa13.74□□□□□ -0.21
PHRF1-202ENST00000413872 HSD52Q0P140 79 aa13.73□□□□□ -0.21
PHRF1-202ENST00000413872 LY6G5BQ8NDX9 201 aa13.73□□□□□ -0.21
PHRF1-202ENST00000413872 ATP6V0BQ99437 205 aa13.73□□□□□ -0.21
PHRF1-202ENST00000413872 A0A1W2PNU3 283 aaPredicted RBP13.73□□□□□ -0.21
PHRF1-202ENST00000413872 PRSS46E5RG02 174 aa13.73□□□□□ -0.21
PHRF1-202ENST00000413872 DIAPH2-AS1Q14236 149 aa13.73□□□□□ -0.21
PHRF1-202ENST00000413872 C6orf226Q5I0X4 101 aa13.73□□□□□ -0.21
PHRF1-202ENST00000413872 FAM120AOSQ5T036 256 aa13.73□□□□□ -0.21
PHRF1-202ENST00000413872 AMN1Q8IY45 258 aa13.73□□□□□ -0.21
PHRF1-202ENST00000413872 C10orf105Q8TEF2 133 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms