RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 A0A0A6YYD5 115 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 HLA-DRB4P13762 266 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 C12orf73Q69YU5 71 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 PDFQ9HBH1 243 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 HLA-DRB4X5D2U9 266 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 DOCK5Q9H7D0 1870 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 DDX60LQ5H9U9 1706 aaKnown RBP3.81□□□□□ -1.8
SCN1A-202ENST00000375405 ANKRD36A6QL64 1941 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 IGHV2-70DA0A0C4DH43 119 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 CXCL10P02778 98 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 LINC00337Q8N6G1 96 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 LIME1Q9H400 295 aa3.81□□□□□ -1.8
SCN1A-202ENST00000375405 IGKV2D-26A0A0A0MRZ7 120 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 TRBV10-2A0A0K0K1G8 114 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 NOVP48745 357 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 ZC2HC1BQ5TFG8 222 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 BCL6BQ8N143 479 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-202ENST00000375405 PLA2G2FQ9BZM2 168 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 KLK13Q9UKR3 277 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 SIGLEC1Q9BZZ2 1709 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 TRAV3A0A0B4J244 114 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 CD55P08174 381 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 PSMB8P28062 276 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 FOXL2P58012 376 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 ZFP2Q6ZN57 461 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 C10orf35Q96D05 121 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 RPP25Q9BUL9 199 aaKnown RBP3.8□□□□□ -1.8
SCN1A-202ENST00000375405 A6NNC1 897 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 GYPEP15421 78 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 AJUBAQ96IF1 538 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 SAA2-SAA4A0A096LPE2 208 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 JPT1Q9UK76 154 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 ICOSQ9Y6W8 199 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 LY96Q9Y6Y9 160 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 IGLV2-18A0A075B6J9 118 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 IGKV3D-7A0A0C4DH55 119 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 TMEM14DPA8MWL7 114 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 IL18BPO95998 194 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 C1QCP02747 245 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 UNQ6494/PRO21346Q6UXR6 183 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 C5orf38Q86SI9 138 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 FAM216BQ8N7L0 139 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 WIPF2Q8TF74 440 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-202ENST00000375405 UPK3BQ9BT76 320 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 CCL3L1P16619 93 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 CRYBA2P53672 197 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 AMTNQ6UX39 209 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 TMEM92Q6UXU6 159 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 GGACTQ9BVM4 153 aa3.8□□□□□ -1.8
SCN1A-202ENST00000375405 SCN7AQ01118 1682 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 TRBV7-1A0A0A6YYK4 115 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 TRAV26-2A0A0B4J265 109 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 SMIM9A6NGZ8 99 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 FSTP19883 344 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 ETDBQ3ZM63 59 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 TMEM52Q8NDY8 209 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 PLXND1Q9Y4D7 1925 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 FOCADQ5VW36 1801 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 PCNX3Q9H6A9 2034 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 CDC42EP2O14613 210 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 CBLN3Q6UW01 205 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 GFI1Q99684 422 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 TRAV4A0A0B4J268 109 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 H0YL77 283 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 DEFB4AO15263 64 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 IGFL4Q6B9Z1 124 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 C20orf204Q6ZNR8 217 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 MYLKQ15746 1914 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 IGHV1-24A0A0C4DH33 117 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 FGF6P10767 208 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 TM4SF4P48230 202 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 SLAQ13239 276 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 TRPM7Q96QT4 1865 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 A0A1B0GW64 132 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 NDUFA4O00483 81 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 PSG8Q9UQ74 426 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 PGLYRP1O75594 196 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-202ENST00000375405 CT62P0C5K7 136 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 SRSF3P84103 164 aaKnown RBP3.79□□□□□ -1.8
SCN1A-202ENST00000375405 FHL2Q14192 279 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 TEN1Q86WV5 123 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 C1QL4Q86Z23 238 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 EXOC3-AS1Q8N2X6 119 aa3.79□□□□□ -1.8
SCN1A-202ENST00000375405 IGKV1-12A0A0C4DH73 117 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 PMS2P5A8MQ11 134 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 SMKR1H3BMG3 65 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 TRBV12-3P01733 135 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 SLPIP03973 132 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 ACYP2P14621 99 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 MIR17HGQ75NE6 70 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 ZNF525Q8N782 197 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 CTHRC1Q96CG8 243 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 DUSP15Q9H1R2 295 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-202ENST00000375405 C9orf66Q5T8R8 295 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 RUSC1-AS1Q66K80 236 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 Q8N1Y9 231 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 Q8TAT8 98 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 SLX1AQ9BQ83 275 aa3.78□□□□□ -1.8
SCN1A-202ENST00000375405 MRM2Q9UI43 246 aaKnown RBP3.78□□□□□ -1.8
SCN1A-202ENST00000375405 TM4SF5O14894 197 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms