RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 PRR31Q5SQ13 230 aa11.21□□□□□ -0.62
VRK3-217ENST00000599538 NUP35Q8NFH5 326 aa11.21□□□□□ -0.62
VRK3-217ENST00000599538 GRAMD2BQ96HH9 432 aa11.21□□□□□ -0.62
VRK3-217ENST00000599538 NEU1Q99519 415 aa11.21□□□□□ -0.62
VRK3-217ENST00000599538 RABAC1Q9UI14 185 aa11.21□□□□□ -0.62
VRK3-217ENST00000599538 IGHV3-66A0A0C4DH42 116 aa11.2□□□□□ -0.62
VRK3-217ENST00000599538 IZUMO1RA6ND01 250 aa11.2□□□□□ -0.62
VRK3-217ENST00000599538 F2Z2F3 143 aa11.2□□□□□ -0.62
VRK3-217ENST00000599538 TCF24Q7RTU0 167 aa11.2□□□□□ -0.62
VRK3-217ENST00000599538 GNB1LQ9BYB4 327 aa11.2□□□□□ -0.62
VRK3-217ENST00000599538 PRSS22Q9GZN4 317 aa11.2□□□□□ -0.62
VRK3-217ENST00000599538 IGHV3OR16-13A0A075B7E8 117 aa11.2□□□□□ -0.62
VRK3-217ENST00000599538 IGHV3-74A0A0B4J1X5 117 aa11.2□□□□□ -0.62
VRK3-217ENST00000599538 CLPSL1A2RUU4 121 aa11.2□□□□□ -0.62
VRK3-217ENST00000599538 DIRC3C9JPN6 131 aa11.2□□□□□ -0.62
VRK3-217ENST00000599538 HLA-DMBP28068 263 aa11.2□□□□□ -0.62
VRK3-217ENST00000599538 DSCR9P59020 149 aa11.2□□□□□ -0.62
VRK3-217ENST00000599538 LYPD1Q8N2G4 141 aa11.2□□□□□ -0.62
VRK3-217ENST00000599538 SMIM12Q96EX1 92 aa11.2□□□□□ -0.62
VRK3-217ENST00000599538 NAT8BQ9UHF3 227 aa11.2□□□□□ -0.62
VRK3-217ENST00000599538 RNF24Q9Y225 148 aa11.2□□□□□ -0.62
VRK3-217ENST00000599538 NBPF19A0A087WUL8 3843 aa11.19□□□□□ -0.62
VRK3-217ENST00000599538 HIGD1CA8MV81 97 aa11.19□□□□□ -0.62
VRK3-217ENST00000599538 BMPR1BO00238 502 aa11.19□□□□□ -0.62
VRK3-217ENST00000599538 ZNF207O43670 478 aaKnown RBP11.19□□□□□ -0.62
VRK3-217ENST00000599538 APOHP02749 345 aaPredicted RBP11.19□□□□□ -0.62
VRK3-217ENST00000599538 SLC25A16P16260 332 aa11.19□□□□□ -0.62
VRK3-217ENST00000599538 LINC00310P59036 64 aa11.19□□□□□ -0.62
VRK3-217ENST00000599538 RAB4BP61018 213 aa11.19□□□□□ -0.62
VRK3-217ENST00000599538 GDF5OSQ5U4N7 250 aa11.19□□□□□ -0.62
VRK3-217ENST00000599538 TSKUQ8WUA8 353 aa11.19□□□□□ -0.62
VRK3-217ENST00000599538 CHD6Q8TD26 2715 aa11.18□□□□□ -0.62
VRK3-217ENST00000599538 IGHV3-49A0A0A0MS15 119 aa11.18□□□□□ -0.62
VRK3-217ENST00000599538 CRIP2P52943 208 aaPredicted RBP11.18□□□□□ -0.62
VRK3-217ENST00000599538 GTSF1Q8WW33 167 aa11.18□□□□□ -0.62
VRK3-217ENST00000599538 EEF1AKMT3Q96AZ1 226 aa11.18□□□□□ -0.62
VRK3-217ENST00000599538 ZC2HC1AQ96GY0 325 aa11.18□□□□□ -0.62
VRK3-217ENST00000599538 APCP25054 2843 aa11.18□□□□□ -0.62
VRK3-217ENST00000599538 TRAV20A0A0B4J274 112 aa11.18□□□□□ -0.62
VRK3-217ENST00000599538 IGHG4P01861 327 aa11.18□□□□□ -0.62
VRK3-217ENST00000599538 RPL7P18124 248 aaKnown RBP11.18□□□□□ -0.62
VRK3-217ENST00000599538 PDE6HQ13956 83 aa11.18□□□□□ -0.62
VRK3-217ENST00000599538 PSG3Q16557 428 aa11.18□□□□□ -0.62
VRK3-217ENST00000599538 RPP21Q9H633 154 aaKnown RBP11.18□□□□□ -0.62
VRK3-217ENST00000599538 PSG8Q9UQ74 426 aa11.18□□□□□ -0.62
VRK3-217ENST00000599538 RNF223E7ERA6 249 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 BUB3O43684 328 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 SCGB2A1O75556 95 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 TGFAP01135 160 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 TRBV12-3P01733 135 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 TRGV3P03979 118 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 GZMBP10144 247 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 ATP5G2Q06055 141 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 LCNL1Q6ZST4 164 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 GBGT1Q8N5D6 347 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 LINC01356Q8N9X3 169 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 TMEM75Q8N9X5 138 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 ZNF492Q9P255 531 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 TENM4Q6N022 2769 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 IGKV2-40A0A087WW87 121 aaPredicted RBP11.17□□□□□ -0.62
VRK3-217ENST00000599538 TRBV7-1A0A0A6YYK4 115 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 IGKV2D-40P01614 121 aaPredicted RBP11.17□□□□□ -0.62
VRK3-217ENST00000599538 P01737 135 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 IGHG2P01859 326 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 IGF1P05019 195 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 CRISP2P16562 243 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 PPIFP30405 207 aaKnown RBP11.17□□□□□ -0.62
VRK3-217ENST00000599538 CRIP1P50238 77 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 SLAQ13239 276 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 S100A7AQ86SG5 101 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 C8orf49Q96NF6 230 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 KLK15Q9H2R5 256 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 AAMDCQ9H7C9 122 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 GSN-AS1Q9NRJ2 163 aa11.17□□□□□ -0.62
VRK3-217ENST00000599538 MXRA5Q9NR99 2828 aa11.16□□□□□ -0.62
VRK3-217ENST00000599538 CR1P17927 2039 aa11.16□□□□□ -0.62
VRK3-217ENST00000599538 ZNF705FA8MVS1 300 aaPredicted RBP11.16□□□□□ -0.62
VRK3-217ENST00000599538 RPL19P84098 196 aaKnown RBP11.16□□□□□ -0.62
VRK3-217ENST00000599538 DEFB112Q30KQ8 113 aa11.16□□□□□ -0.62
VRK3-217ENST00000599538 TEX15Q9BXT5 2789 aa11.16□□□□□ -0.62
VRK3-217ENST00000599538 ZNF469Q96JG9 3925 aaPredicted RBP11.16□□□□□ -0.62
VRK3-217ENST00000599538 DOPEY2Q9Y3R5 2298 aa11.16□□□□□ -0.62
VRK3-217ENST00000599538 TRBV6-1A0A0K0K1D8 114 aa11.15□□□□□ -0.62
VRK3-217ENST00000599538 NPIPB6E9PJ23 425 aa11.15□□□□□ -0.62
VRK3-217ENST00000599538 TPPP2P59282 170 aa11.15□□□□□ -0.62
VRK3-217ENST00000599538 WDR73Q6P4I2 378 aa11.15□□□□□ -0.62
VRK3-217ENST00000599538 SSBP4Q9BWG4 385 aaPredicted RBP11.15□□□□□ -0.62
VRK3-217ENST00000599538 IGHV4-59P01825 116 aa11.15□□□□□ -0.62
VRK3-217ENST00000599538 GATA3P23771 443 aa11.15□□□□□ -0.62
VRK3-217ENST00000599538 CAMPP49913 170 aa11.15□□□□□ -0.62
VRK3-217ENST00000599538 TMEM95Q3KNT9 176 aa11.15□□□□□ -0.62
VRK3-217ENST00000599538 DAZAP1Q96EP5 407 aaKnown RBP11.15□□□□□ -0.62
VRK3-217ENST00000599538 ZNF331Q9NQX6 463 aaPredicted RBP11.15□□□□□ -0.62
VRK3-217ENST00000599538 SERF1AO75920 110 aa11.14□□□□□ -0.63
VRK3-217ENST00000599538 IGHV3-11P01762 117 aa11.14□□□□□ -0.63
VRK3-217ENST00000599538 MT-ND6P03923 174 aa11.14□□□□□ -0.63
VRK3-217ENST00000599538 PGLYRP4Q96LB8 373 aa11.14□□□□□ -0.63
VRK3-217ENST00000599538 A0A1B0GXF2 115 aa11.14□□□□□ -0.63
VRK3-217ENST00000599538 A8MWL6 223 aa11.14□□□□□ -0.63
VRK3-217ENST00000599538 CHEK1O14757 476 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms