RNA–Protein interactions for RNA: ENST00000585031.2

TOP3A-220, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-220ENST00000585031 PCNPQ8WW12 178 aaKnown RBP12.85□□□□□ -0.35
TOP3A-220ENST00000585031 SAT2Q96F10 170 aaPredicted RBP12.85□□□□□ -0.35
TOP3A-220ENST00000585031 MT-CO2P00403 227 aa12.84□□□□□ -0.35
TOP3A-220ENST00000585031 PRCDQ00LT1 54 aa12.84□□□□□ -0.35
TOP3A-220ENST00000585031 SPINK9Q5DT21 86 aa12.84□□□□□ -0.35
TOP3A-220ENST00000585031 OR8G2PQ6IF36 304 aa12.84□□□□□ -0.35
TOP3A-220ENST00000585031 HSD17B11Q8NBQ5 300 aa12.84□□□□□ -0.35
TOP3A-220ENST00000585031 OR1P1Q8NH06 330 aa12.84□□□□□ -0.35
TOP3A-220ENST00000585031 DCANP1Q8TF63 244 aa12.84□□□□□ -0.35
TOP3A-220ENST00000585031 MISP3Q96FF7 219 aa12.84□□□□□ -0.35
TOP3A-220ENST00000585031 TMEM147Q9BVK8 224 aa12.84□□□□□ -0.35
TOP3A-220ENST00000585031 PARD6GQ9BYG4 376 aaPredicted RBP12.84□□□□□ -0.35
TOP3A-220ENST00000585031 VPS13BQ7Z7G8 4022 aa12.84□□□□□ -0.35
TOP3A-220ENST00000585031 CD5P06127 495 aa12.83□□□□□ -0.36
TOP3A-220ENST00000585031 NPY1RP25929 384 aa12.83□□□□□ -0.36
TOP3A-220ENST00000585031 STXBP6Q8NFX7 210 aa12.83□□□□□ -0.36
TOP3A-220ENST00000585031 TXN2Q99757 166 aa12.83□□□□□ -0.36
TOP3A-220ENST00000585031 PUS1Q9Y606 427 aaKnown RBP eCLIP12.83□□□□□ -0.36
TOP3A-220ENST00000585031 SRRM2Q9UQ35 2752 aaKnown RBP12.82□□□□□ -0.36
TOP3A-220ENST00000585031 UMAD1C9J7I0 102 aa12.82□□□□□ -0.36
TOP3A-220ENST00000585031 ATP6V0CP27449 155 aa12.82□□□□□ -0.36
TOP3A-220ENST00000585031 GRAMD2BQ96HH9 432 aa12.82□□□□□ -0.36
TOP3A-220ENST00000585031 FAM210BQ96KR6 192 aa12.82□□□□□ -0.36
TOP3A-220ENST00000585031 UQCC1Q9NVA1 299 aa12.82□□□□□ -0.36
TOP3A-220ENST00000585031 XCL2Q9UBD3 114 aa12.82□□□□□ -0.36
TOP3A-220ENST00000585031 UBR4Q5T4S7 5183 aa12.81□□□□□ -0.36
TOP3A-220ENST00000585031 ARL16Q0P5N6 197 aa12.81□□□□□ -0.36
TOP3A-220ENST00000585031 SLC24A4Q8NFF2 622 aa12.81□□□□□ -0.36
TOP3A-220ENST00000585031 OR2G3Q8NGZ4 309 aa12.81□□□□□ -0.36
TOP3A-220ENST00000585031 GGACTQ9BVM4 153 aa12.81□□□□□ -0.36
TOP3A-220ENST00000585031 GNG7O60262 68 aa12.8□□□□□ -0.36
TOP3A-220ENST00000585031 EMP1P54849 157 aa12.8□□□□□ -0.36
TOP3A-220ENST00000585031 ERHP84090 104 aaKnown RBP12.8□□□□□ -0.36
TOP3A-220ENST00000585031 PSMG3Q9BT73 122 aaPredicted RBP12.8□□□□□ -0.36
TOP3A-220ENST00000585031 UBE2L5PA0A1B0GUS4 154 aa12.79□□□□□ -0.36
TOP3A-220ENST00000585031 PMS2P5A8MQ11 134 aa12.79□□□□□ -0.36
TOP3A-220ENST00000585031 INS-IGF2F8WCM5 200 aa12.79□□□□□ -0.36
TOP3A-220ENST00000585031 CAMLGP49069 296 aa12.79□□□□□ -0.36
TOP3A-220ENST00000585031 DLK1P80370 383 aa12.79□□□□□ -0.36
TOP3A-220ENST00000585031 AKR1C8PQ5T2L2 129 aa12.79□□□□□ -0.36
TOP3A-220ENST00000585031 TMEM182Q6ZP80 229 aaPredicted RBP12.79□□□□□ -0.36
TOP3A-220ENST00000585031 WDR61Q9GZS3 305 aaKnown RBP12.79□□□□□ -0.36
TOP3A-220ENST00000585031 TIMM9Q9Y5J7 89 aa12.79□□□□□ -0.36
TOP3A-220ENST00000585031 SPART-AS1P0CW21 52 aa12.78□□□□□ -0.36
TOP3A-220ENST00000585031 INAFM2P0DMQ5 153 aa12.78□□□□□ -0.36
TOP3A-220ENST00000585031 SNCAP37840 140 aa12.78□□□□□ -0.36
TOP3A-220ENST00000585031 VWC2Q2TAL6 325 aa12.78□□□□□ -0.36
TOP3A-220ENST00000585031 DPPA3Q6W0C5 159 aa12.78□□□□□ -0.36
TOP3A-220ENST00000585031 ZNF705AQ6ZN79 300 aaPredicted RBP12.78□□□□□ -0.36
TOP3A-220ENST00000585031 ZNF600Q6ZNG1 722 aa12.78□□□□□ -0.36
TOP3A-220ENST00000585031 SH3BGRL3Q9H299 93 aa12.78□□□□□ -0.36
TOP3A-220ENST00000585031 MRPL36Q9P0J6 103 aaKnown RBP12.78□□□□□ -0.36
TOP3A-220ENST00000585031 EPM2AB3EWF7 344 aa12.77□□□□□ -0.37
TOP3A-220ENST00000585031 C17orf112F2Z3M2 114 aa12.77□□□□□ -0.37
TOP3A-220ENST00000585031 SUB1P53999 127 aaKnown RBP eCLIP12.77□□□□□ -0.37
TOP3A-220ENST00000585031 SERF2P84101 59 aa12.77□□□□□ -0.37
TOP3A-220ENST00000585031 C2orf83Q53S99 150 aa12.77□□□□□ -0.37
TOP3A-220ENST00000585031 TMEM88Q6PEY1 159 aa12.77□□□□□ -0.37
TOP3A-220ENST00000585031 Q6ZRG5 221 aa12.77□□□□□ -0.37
TOP3A-220ENST00000585031 SPATA12Q7Z6I5 190 aa12.77□□□□□ -0.37
TOP3A-220ENST00000585031 ZNF709Q8N972 641 aa12.77□□□□□ -0.37
TOP3A-220ENST00000585031 DKK2Q9UBU2 259 aa12.77□□□□□ -0.37
TOP3A-220ENST00000585031 RAB19A4D1S5 217 aa12.76□□□□□ -0.37
TOP3A-220ENST00000585031 ZNF705FA8MVS1 300 aaPredicted RBP12.76□□□□□ -0.37
TOP3A-220ENST00000585031 FNDC10F2Z333 226 aa12.76□□□□□ -0.37
TOP3A-220ENST00000585031 MPDU1O75352 247 aa12.76□□□□□ -0.37
TOP3A-220ENST00000585031 ZNF705DP0CH99 300 aaPredicted RBP12.76□□□□□ -0.37
TOP3A-220ENST00000585031 ZNF705BP0CI00 300 aaPredicted RBP12.76□□□□□ -0.37
TOP3A-220ENST00000585031 HTN3P15516 51 aa12.76□□□□□ -0.37
TOP3A-220ENST00000585031 FGF7P21781 194 aa12.76□□□□□ -0.37
TOP3A-220ENST00000585031 NPPCP23582 126 aa12.76□□□□□ -0.37
TOP3A-220ENST00000585031 CRYBB3P26998 211 aa12.76□□□□□ -0.37
TOP3A-220ENST00000585031 KRTAP10-2P60368 255 aa12.76□□□□□ -0.37
TOP3A-220ENST00000585031 PSMG4Q5JS54 123 aa12.76□□□□□ -0.37
TOP3A-220ENST00000585031 PXDC1Q5TGL8 231 aa12.76□□□□□ -0.37
TOP3A-220ENST00000585031 C6orf223Q8N319 242 aa12.76□□□□□ -0.37
TOP3A-220ENST00000585031 EIF4E3Q8N5X7 224 aaKnown RBP12.76□□□□□ -0.37
TOP3A-220ENST00000585031 ZNF114Q8NC26 417 aa12.76□□□□□ -0.37
TOP3A-220ENST00000585031 NEU1Q99519 415 aa12.76□□□□□ -0.37
TOP3A-220ENST00000585031 FLG2Q5D862 2391 aaPredicted RBP12.76□□□□□ -0.37
TOP3A-220ENST00000585031 NBDYA0A0U1RRE5 68 aa12.75□□□□□ -0.37
TOP3A-220ENST00000585031 FAM3BP58499 235 aaPredicted RBP12.75□□□□□ -0.37
TOP3A-220ENST00000585031 RAB2AP61019 212 aa12.75□□□□□ -0.37
TOP3A-220ENST00000585031 FAM222AQ5U5X8 452 aa12.75□□□□□ -0.37
TOP3A-220ENST00000585031 UQCC3Q6UW78 93 aa12.75□□□□□ -0.37
TOP3A-220ENST00000585031 FAM213BQ8TBF2 198 aa12.75□□□□□ -0.37
TOP3A-220ENST00000585031 FAM210AQ96ND0 272 aa12.75□□□□□ -0.37
TOP3A-220ENST00000585031 KCNIP2Q9NS61 270 aa12.75□□□□□ -0.37
TOP3A-220ENST00000585031 SMCO3A2RU48 225 aa12.74□□□□□ -0.37
TOP3A-220ENST00000585031 H3BMM0 161 aa12.74□□□□□ -0.37
TOP3A-220ENST00000585031 TEX46H3BTG2 121 aa12.74□□□□□ -0.37
TOP3A-220ENST00000585031 MBP02144 154 aa12.74□□□□□ -0.37
TOP3A-220ENST00000585031 DEFB1P60022 68 aa12.74□□□□□ -0.37
TOP3A-220ENST00000585031 NIPSNAP3BQ9BS92 247 aa12.74□□□□□ -0.37
TOP3A-220ENST00000585031 TMEM231Q9H6L2 316 aa12.74□□□□□ -0.37
TOP3A-220ENST00000585031 WDR83OSQ9Y284 106 aa12.74□□□□□ -0.37
TOP3A-220ENST00000585031 HBE1P02100 147 aa12.73□□□□□ -0.37
TOP3A-220ENST00000585031 RNASE2P10153 161 aaKnown RBP12.73□□□□□ -0.37
TOP3A-220ENST00000585031 FXYD7P58549 80 aa12.73□□□□□ -0.37
TOP3A-220ENST00000585031 RAB31Q13636 194 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms