RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 EXOC3-AS1Q8N2X6 119 aa7.7□□□□□ -1.18
CCDC40-212ENST00000574799 TTC9CQ8N5M4 171 aa7.7□□□□□ -1.18
CCDC40-212ENST00000574799 SYT8Q8NBV8 401 aa7.7□□□□□ -1.18
CCDC40-212ENST00000574799 OR10X1Q8NGY0 326 aa7.7□□□□□ -1.18
CCDC40-212ENST00000574799 FOXC2Q99958 501 aa7.7□□□□□ -1.18
CCDC40-212ENST00000574799 DKK2Q9UBU2 259 aa7.7□□□□□ -1.18
CCDC40-212ENST00000574799 SS18L2Q9UHA2 77 aa7.7□□□□□ -1.18
CCDC40-212ENST00000574799 CYSLTR1Q9Y271 337 aa7.7□□□□□ -1.18
CCDC40-212ENST00000574799 TCRBV4S1A1TA0A5B7 111 aa7.69□□□□□ -1.18
CCDC40-212ENST00000574799 F8W1H4 67 aa7.69□□□□□ -1.18
CCDC40-212ENST00000574799 AMN1Q8IY45 258 aa7.69□□□□□ -1.18
CCDC40-212ENST00000574799 FAM222BQ8WU58 562 aa7.69□□□□□ -1.18
CCDC40-212ENST00000574799 FER1L6-AS2Q96M78 137 aa7.69□□□□□ -1.18
CCDC40-212ENST00000574799 IQCF6A8MYZ5 107 aa7.69□□□□□ -1.18
CCDC40-212ENST00000574799 SMKR1H3BMG3 65 aa7.69□□□□□ -1.18
CCDC40-212ENST00000574799 FAM106CPP0CH98 169 aa7.69□□□□□ -1.18
CCDC40-212ENST00000574799 FAM106AQ4KMX7 169 aa7.69□□□□□ -1.18
CCDC40-212ENST00000574799 FXYD5Q96DB9 178 aa7.69□□□□□ -1.18
CCDC40-212ENST00000574799 SPAG8Q99932 426 aaPredicted RBP7.69□□□□□ -1.18
CCDC40-212ENST00000574799 MRPL16Q9NX20 251 aaKnown RBP7.69□□□□□ -1.18
CCDC40-212ENST00000574799 WNK2Q9Y3S1 2297 aa7.69□□□□□ -1.18
CCDC40-212ENST00000574799 FNDC10F2Z333 226 aa7.69□□□□□ -1.18
CCDC40-212ENST00000574799 C15orf65H3BRN8 121 aa7.69□□□□□ -1.18
CCDC40-212ENST00000574799 LGALS9BQ3B8N2 356 aa7.69□□□□□ -1.18
CCDC40-212ENST00000574799 LGALS9CQ6DKI2 356 aa7.69□□□□□ -1.18
CCDC40-212ENST00000574799 TMEM189A5PLL7 270 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 KIR2DL2P43627 348 aaPredicted RBP7.68□□□□□ -1.18
CCDC40-212ENST00000574799 LOXL1Q08397 574 aaPredicted RBP7.68□□□□□ -1.18
CCDC40-212ENST00000574799 ZNRD1Q9P1U0 126 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 NPIPB6E9PJ23 425 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 SCGB1C2P0DMR2 95 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 PLGLAQ15195 96 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 CT83Q5H943 113 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 ZNF714Q96N38 554 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 SIGLEC8Q9NYZ4 499 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 HIGD1AQ9Y241 93 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 MUC6Q6W4X9 2439 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 TRGV5A0A0B4J1U4 118 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 KLRC4-KLRK1H3BQV0 150 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 TGFAP01135 160 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 LTAP01374 205 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 ZC2HC1BQ5TFG8 222 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 MBNL2Q5VZF2 373 aaKnown RBP7.68□□□□□ -1.18
CCDC40-212ENST00000574799 C9orf106Q8NAJ2 232 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 SRSF8Q9BRL6 282 aaKnown RBP7.68□□□□□ -1.18
CCDC40-212ENST00000574799 INSIG2Q9Y5U4 225 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 COL12A1Q99715 3063 aa7.68□□□□□ -1.18
CCDC40-212ENST00000574799 PIEZO2Q9H5I5 2752 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 SIVA1O15304 175 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 CNIH1O95406 144 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 ATP5IP56385 69 aaPredicted RBP7.67□□□□□ -1.18
CCDC40-212ENST00000574799 SCGB1D4Q6XE38 83 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 GFRA4Q9GZZ7 299 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 PLSCR4Q9NRQ2 329 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 RAI1Q7Z5J4 1906 aaPredicted RBP7.67□□□□□ -1.18
CCDC40-212ENST00000574799 TMEM213A2RRL7 107 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 HAX1O00165 279 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 LEPP41159 167 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 SRSF9Q13242 221 aaKnown RBP eCLIP7.67□□□□□ -1.18
CCDC40-212ENST00000574799 ITLN1Q8WWA0 313 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 MAP1LC3AQ9H492 121 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 NCBP2LA6PVI3 153 aaKnown RBP7.67□□□□□ -1.18
CCDC40-212ENST00000574799 IL4P05112 153 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 PSMB2P49721 201 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 MSMPQ1L6U9 139 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 PRR7Q8TB68 274 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 RPEQ96AT9 228 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 C20orf78Q9BR46 151 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 DSCAML1Q8TD84 2053 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 CELSR1Q9NYQ6 3014 aa7.67□□□□□ -1.18
CCDC40-212ENST00000574799 IGHV3-72A0A0B4J1Y9 119 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 CCL11P51671 97 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 C22orf34Q6ZV56 151 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 Q86TA4 180 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 SPANXB1Q9NS25 103 aaPredicted RBP7.66□□□□□ -1.18
CCDC40-212ENST00000574799 ZNF492Q9P255 531 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 SRRM4A7MD48 611 aaKnown RBP7.66□□□□□ -1.18
CCDC40-212ENST00000574799 PLXNB1O43157 2135 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 SCGB2A1O75556 95 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 TNFRSF1AP19438 455 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 VMA21Q3ZAQ7 101 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 PATE2Q6UY27 113 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 GCSAMQ8N6F7 178 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 CCL13Q99616 98 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 ACACAQ13085 2346 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 IGKCP01834 107 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 ORM1P02763 201 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 LYZL1Q6UWQ5 148 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 C11orf53Q8IXP5 236 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 AAMDCQ9H7C9 122 aa7.66□□□□□ -1.18
CCDC40-212ENST00000574799 PRR33A8MZF0 331 aa7.65□□□□□ -1.18
CCDC40-212ENST00000574799 FGF6P10767 208 aa7.65□□□□□ -1.18
CCDC40-212ENST00000574799 NBL1P41271 181 aa7.65□□□□□ -1.18
CCDC40-212ENST00000574799 FOXI2Q6ZQN5 318 aa7.65□□□□□ -1.18
CCDC40-212ENST00000574799 TMEM178AQ8NBL3 297 aa7.65□□□□□ -1.18
CCDC40-212ENST00000574799 MYOZ3Q8TDC0 251 aa7.65□□□□□ -1.18
CCDC40-212ENST00000574799 MRPL20Q9BYC9 149 aaKnown RBP7.65□□□□□ -1.18
CCDC40-212ENST00000574799 IGKV1D-17A0A075B6S4 117 aa7.65□□□□□ -1.18
CCDC40-212ENST00000574799 IGKV3-15P01624 115 aa7.65□□□□□ -1.18
CCDC40-212ENST00000574799 EVI2AP22794 236 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms