RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 RBPMS2Q6ZRY4 209 aaKnown RBP7.74□□□□□ -1.17
SS18-205ENST00000542420 AAMDCQ9H7C9 122 aa7.74□□□□□ -1.17
SS18-205ENST00000542420 CFAP47Q6ZTR5 3102 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 HIVEP3Q5T1R4 2406 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 NCBP2LA6PVI3 153 aaKnown RBP7.73□□□□□ -1.17
SS18-205ENST00000542420 NPFFO15130 113 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 SERF1AO75920 110 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 APELAP0DMC3 54 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 GNLYP22749 145 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 HBBP68871 147 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 NDPQ00604 133 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 OCIAD2Q56VL3 154 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 PIMREGQ9BSJ6 248 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 GNB4Q9HAV0 340 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 ARHGAP32A7KAX9 2087 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 SPTA1P02549 2419 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 A0A087X0K7 114 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 HIGD1CA8MV81 97 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 IGLC3P0DOY3 106 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 RHOGP84095 191 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 SRSF2Q01130 221 aaKnown RBP7.73□□□□□ -1.17
SS18-205ENST00000542420 PSG3Q16557 428 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 Q56UQ5 140 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 ZNF738Q8NE65 137 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 VPS25Q9BRG1 176 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 BPESC1Q9GZL8 116 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 CST9LQ9H4G1 147 aa7.73□□□□□ -1.17
SS18-205ENST00000542420 CENPVL3A0A0U1RRI6 287 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 VWC2LB2RUY7 222 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 DIRC3C9JPN6 131 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 GPX1P07203 203 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 CSN1S1P47710 185 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 RPS20P60866 119 aaKnown RBP7.72□□□□□ -1.17
SS18-205ENST00000542420 CIARTQ8N365 385 aaPredicted RBP7.72□□□□□ -1.17
SS18-205ENST00000542420 NHLRC2Q8NBF2 726 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 ZNF502Q8TBZ5 544 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 CLUHP3Q96NS8 147 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 MEGF9Q9H1U4 602 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 RABAC1Q9UI14 185 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 TRBV7-1A0A0A6YYK4 115 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 GRIFINA4D1Z8 144 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 SAA4P35542 130 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 TCL1AP56279 114 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 MRPL54Q6P161 138 aaKnown RBP7.72□□□□□ -1.17
SS18-205ENST00000542420 SIGLECL1Q8N7X8 197 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 FAM168AQ92567 244 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 FAM103A1Q9BTL3 118 aaKnown RBP7.72□□□□□ -1.17
SS18-205ENST00000542420 CLEC5AQ9NY25 188 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 FBXL7Q9UJT9 491 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 PSG8Q9UQ74 426 aa7.72□□□□□ -1.17
SS18-205ENST00000542420 H3BUA1 57 aa7.71□□□□□ -1.18
SS18-205ENST00000542420 CTSGP08311 255 aa7.71□□□□□ -1.18
SS18-205ENST00000542420 SRIP30626 198 aa7.71□□□□□ -1.18
SS18-205ENST00000542420 DSCR9P59020 149 aa7.71□□□□□ -1.18
SS18-205ENST00000542420 GOLT1AQ6ZVE7 132 aa7.71□□□□□ -1.18
SS18-205ENST00000542420 OR4C5Q8NGB2 326 aa7.71□□□□□ -1.18
SS18-205ENST00000542420 HSPB9Q9BQS6 159 aa7.71□□□□□ -1.18
SS18-205ENST00000542420 SAMD10Q9BYL1 202 aa7.71□□□□□ -1.18
SS18-205ENST00000542420 UQCR10Q9UDW1 63 aa7.71□□□□□ -1.18
SS18-205ENST00000542420 ASPMQ8IZT6 3477 aa7.71□□□□□ -1.18
SS18-205ENST00000542420 IGF2RP11717 2491 aa7.71□□□□□ -1.18
SS18-205ENST00000542420 C19orf84I3L1E1 186 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 ZNF324O75467 553 aaPredicted RBP7.7□□□□□ -1.18
SS18-205ENST00000542420 IGHV4-39P01824 125 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 COL8A1P27658 744 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 PRR27Q6MZM9 219 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 C18orf32Q8TCD1 76 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 MRPL53Q96EL3 112 aaKnown RBP7.7□□□□□ -1.18
SS18-205ENST00000542420 ZNF580Q9UK33 172 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 MOB4Q9Y3A3 225 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 RBAKDNA6NC62 111 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 FAM223BA6NKX1 122 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 NDUFS7O75251 213 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 PMCHP20382 165 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 BMI1P35226 326 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 UQCRFS1P47985 274 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 C19orf54Q5BKX5 351 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 FAM223AQ8IWN6 122 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 C5orf56Q8N8D9 126 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 C10orf105Q8TEF2 133 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 WFDC12Q8WWY7 111 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 EEF1AKMT3Q96AZ1 226 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 NDFIP1Q9BT67 221 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 BOD1L1Q8NFC6 3051 aa7.7□□□□□ -1.18
SS18-205ENST00000542420 TPRP12270 2363 aaKnown RBP7.7□□□□□ -1.18
SS18-205ENST00000542420 IGHV1-69DA0A0B4J2H0 117 aa7.69□□□□□ -1.18
SS18-205ENST00000542420 IGHV1-69P01742 117 aa7.69□□□□□ -1.18
SS18-205ENST00000542420 SLAQ13239 276 aa7.69□□□□□ -1.18
SS18-205ENST00000542420 RIGQ13278 110 aa7.69□□□□□ -1.18
SS18-205ENST00000542420 EXOC3-AS1Q8N2X6 119 aa7.69□□□□□ -1.18
SS18-205ENST00000542420 CHCHD1Q96BP2 118 aaKnown RBP7.69□□□□□ -1.18
SS18-205ENST00000542420 SLC50A1Q9BRV3 221 aa7.69□□□□□ -1.18
SS18-205ENST00000542420 A0A1W2PS18 150 aa7.69□□□□□ -1.18
SS18-205ENST00000542420 CA1P00915 261 aaPredicted RBP7.69□□□□□ -1.18
SS18-205ENST00000542420 FRMD6-AS1P0C7T7 363 aa7.69□□□□□ -1.18
SS18-205ENST00000542420 CT45A10P0DMU9 189 aa7.69□□□□□ -1.18
SS18-205ENST00000542420 CD24P25063 80 aa7.69□□□□□ -1.18
SS18-205ENST00000542420 SPATA45Q537H7 98 aa7.69□□□□□ -1.18
SS18-205ENST00000542420 KLF17Q5JT82 389 aaPredicted RBP7.69□□□□□ -1.18
SS18-205ENST00000542420 PRSS57Q6UWY2 283 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms