RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 GPX1P07203 203 aa8.5□□□□□ -1.05
CLIP1-213ENST00000540338 RUSC1-AS1Q66K80 236 aa8.5□□□□□ -1.05
CLIP1-213ENST00000540338 TMEM75Q8N9X5 138 aa8.5□□□□□ -1.05
CLIP1-213ENST00000540338 SIRPDQ9H106 197 aa8.5□□□□□ -1.05
CLIP1-213ENST00000540338 IGHV7-81A0A0B4J1V7 117 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 IGHV1-69DA0A0B4J2H0 117 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 FAM231BA6NCW3 169 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 G3V318 75 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 LTAP01374 205 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 IGHV1-69P01742 117 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 CD33P20138 364 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 CKS2P33552 79 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 SPATA45Q537H7 98 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 Q6ZN92 141 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 C17orf77Q96MU5 243 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 USP34Q70CQ2 3546 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 A0A0G2JLM5 398 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 LOC389332A0A1B0GUA5 103 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 J3KRW8 73 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 DSCR9P59020 149 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 PAX2Q02962 417 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 PAX8Q06710 450 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 ZNF664Q8N3J9 261 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 OR10J6PQ8NGY7 276 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 NDUFAF3Q9BU61 184 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 KLF12Q9Y4X4 402 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 RAI1Q7Z5J4 1906 aaPredicted RBP8.49□□□□□ -1.05
CLIP1-213ENST00000540338 FABP5P3A8MUU1 101 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 M0QZ24 198 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 BTF3P20290 206 aaKnown RBP8.49□□□□□ -1.05
CLIP1-213ENST00000540338 CDPF1Q6NVV7 123 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 ZNF414Q96IQ9 312 aa8.49□□□□□ -1.05
CLIP1-213ENST00000540338 B4DSR2 109 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 H3BUX3 64 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 IGLV2-8P01709 118 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 LBHQ53QV2 105 aaPredicted RBP8.48□□□□□ -1.05
CLIP1-213ENST00000540338 NIT1Q86X76 327 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 Q8N9W7 124 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 ACACBO00763 2458 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 CACNA1AO00555 2505 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 A1L4Q6 167 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 IGHV4-39P01824 125 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 SLAQ13239 276 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 FER1L6-AS1Q8NA97 138 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 AP5S1Q9NUS5 200 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 CLEC5AQ9NY25 188 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 IGHV3-11P01762 117 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 FAM106AQ4KMX7 169 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 ASCL2Q99929 193 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 UFC1Q9Y3C8 167 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 CFAP54Q96N23 3096 aa8.48□□□□□ -1.05
CLIP1-213ENST00000540338 CENPVL3A0A0U1RRI6 287 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 KHDC1LQ5JSQ8 128 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 PRR31Q5SQ13 230 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 LCN12Q6JVE5 192 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 FANCD2OSQ96PS1 177 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 TMEM70Q9BUB7 260 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 MUC21A0A0G2JKD1 596 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 MUC21A0A140T8X8 626 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 TGFAP01135 160 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 MUC21Q5SSG8 566 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 SPANXN1Q5VSR9 72 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 IGFL4Q6B9Z1 124 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 C18orf32Q8TCD1 76 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 TET2Q6N021 2002 aaPredicted RBP8.47□□□□□ -1.05
CLIP1-213ENST00000540338 LMO4P61968 165 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 C1orf194Q5T5A4 169 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 ATOH7Q8N100 152 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 DYNAPQ8N1N2 210 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 PRDM13Q9H4Q3 707 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 CHD8Q9HCK8 2581 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 ARHGAP32A7KAX9 2087 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 MSMBP08118 114 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 LINC00614P0C842 121 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 NDPQ00604 133 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 WIPF2Q8TF74 440 aaPredicted RBP8.47□□□□□ -1.05
CLIP1-213ENST00000540338 UQCR10Q9UDW1 63 aa8.47□□□□□ -1.05
CLIP1-213ENST00000540338 WI2-2373I1.2A0A1W2PRP0 233 aa8.46□□□□□ -1.05
CLIP1-213ENST00000540338 C19orf84I3L1E1 186 aa8.46□□□□□ -1.05
CLIP1-213ENST00000540338 FRMD6-AS1P0C7T7 363 aa8.46□□□□□ -1.05
CLIP1-213ENST00000540338 SIGLEC15Q6ZMC9 328 aa8.46□□□□□ -1.05
CLIP1-213ENST00000540338 FAM223BA6NKX1 122 aa8.46□□□□□ -1.06
CLIP1-213ENST00000540338 A8MWP6 167 aa8.46□□□□□ -1.06
CLIP1-213ENST00000540338 NUPR1O60356 82 aa8.46□□□□□ -1.06
CLIP1-213ENST00000540338 ID1P41134 155 aa8.46□□□□□ -1.06
CLIP1-213ENST00000540338 WFDC3Q8IUB2 231 aa8.46□□□□□ -1.06
CLIP1-213ENST00000540338 FAM223AQ8IWN6 122 aa8.46□□□□□ -1.06
CLIP1-213ENST00000540338 OR10AG1Q8NH19 301 aa8.46□□□□□ -1.06
CLIP1-213ENST00000540338 FAM208BQ5VWN6 2430 aa8.46□□□□□ -1.06
CLIP1-213ENST00000540338 APOHP02749 345 aaPredicted RBP8.46□□□□□ -1.06
CLIP1-213ENST00000540338 CTSGP08311 255 aa8.46□□□□□ -1.06
CLIP1-213ENST00000540338 Q8TAT8 98 aa8.46□□□□□ -1.06
CLIP1-213ENST00000540338 CHCHD1Q96BP2 118 aaKnown RBP8.46□□□□□ -1.06
CLIP1-213ENST00000540338 PRELID3AQ96N28 172 aa8.46□□□□□ -1.06
CLIP1-213ENST00000540338 CELSR3Q9NYQ7 3312 aa8.45□□□□□ -1.06
CLIP1-213ENST00000540338 IGHV4-61A0A0C4DH41 118 aa8.45□□□□□ -1.06
CLIP1-213ENST00000540338 SH2D1AO60880 128 aa8.45□□□□□ -1.06
CLIP1-213ENST00000540338 ZC2HC1AQ96GY0 325 aa8.45□□□□□ -1.06
CLIP1-213ENST00000540338 LDLRAD2Q5SZI1 272 aa8.45□□□□□ -1.06
CLIP1-213ENST00000540338 Q6ZWC4 215 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms