RNA–Protein interactions for RNA: ENST00000560131.1

TPM1-222, Transcript of tropomyosin 1, human

TSL 2

Gene TPM1, Length 537 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-222	ENST00000560131	VGLL1	Q99990	258 aa		4.15	□□□□□ -1.75
TPM1-222	ENST00000560131	VCX2	Q9H322	139 aa		4.15	□□□□□ -1.75
TPM1-222	ENST00000560131	RPP21	Q9H633	154 aa	Known RBP	4.15	□□□□□ -1.75
TPM1-222	ENST00000560131	FNDC4	Q9H6D8	234 aa	Predicted RBP	4.15	□□□□□ -1.75
TPM1-222	ENST00000560131	SPANXA1	Q9NS26	97 aa		4.15	□□□□□ -1.75
TPM1-222	ENST00000560131	CLCF1	Q9UBD9	225 aa		4.15	□□□□□ -1.75
TPM1-222	ENST00000560131	USF3	Q68DE3	2245 aa		4.15	□□□□□ -1.75
TPM1-222	ENST00000560131	RTTN	Q86VV8	2226 aa		4.15	□□□□□ -1.75
TPM1-222	ENST00000560131	PCNT	O95613	3336 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	TEX50	A0A1B0GTY4	177 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	LINC01619	G3V211	115 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	C15orf65	H3BRN8	121 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	SPINK4	O60575	86 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	TSPAN13	O95857	204 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	PRSS2	P07478	247 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	SMIM13	P0DJ93	91 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	CCL5	P13501	91 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	OTX2	P32243	289 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	SSR4	P51571	173 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	KRTAP10-9	P60411	292 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	RPL24	P83731	157 aa	Known RBP	4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	TMEM30B	Q3MIR4	351 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131		Q6AWC8	147 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	ZNF493	Q6ZR52	646 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	SLC25A48	Q6ZT89	311 aa	Known RBP	4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	ZNF329	Q86UD4	541 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	STH	Q8IWL8	128 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	TDH	Q8IZJ6	230 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	CT55	Q8WUE5	264 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	PHLDA1	Q8WV24	401 aa	Predicted RBP	4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	GTSF1	Q8WW33	167 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	FMC1	Q96HJ9	113 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	C17orf77	Q96MU5	243 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	ENY2	Q9NPA8	101 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	SPANXB1	Q9NS25	103 aa	Predicted RBP	4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	ZNF355P	Q9NSJ1	428 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	MRPL16	Q9NX20	251 aa	Known RBP	4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	RALY	Q9UKM9	306 aa	Known RBP	4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	PRND	Q9UKY0	176 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	HCFC1	P51610	2035 aa		4.14	□□□□□ -1.75
TPM1-222	ENST00000560131	ABCA7	Q8IZY2	2146 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	ZNF407	Q9C0G0	2248 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	TET2	Q6N021	2002 aa	Predicted RBP	4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	IGHV1-45	A0A0A0MS14	117 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	TEX48	A0A1B0GUV7	120 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	hADV38S2	A0JD32	116 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	C5orf49	A4QMS7	147 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	LINC01546	A6NGU7	62 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	IQCF6	A8MYZ5	107 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131		E9PLD3	99 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131		F8WDY8	70 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	CXCL13	O43927	109 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	GNG7	O60262	68 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	MRPL33	O75394	65 aa	Known RBP	4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	LTA	P01374	205 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	IGHG4	P01861	327 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	APOA2	P02652	100 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	CCL3	P10147	92 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	CD59	P13987	128 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	RAB9A	P51151	201 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	CKS1B	P61024	79 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	UBE2L3	P68036	154 aa	Known RBP	4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	SLC35B1	P78383	322 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	PRCD	Q00LT1	54 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	SRY	Q05066	204 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	LINC00173	Q6ZV60	143 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	WDR86	Q86TI4	376 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	ABHD12	Q8N2K0	398 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	ZADH2	Q8N4Q0	377 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	TTC9C	Q8N5M4	171 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	NRAC	Q8N912	160 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	TSTD1	Q8NFU3	115 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	OR10D3	Q8NH80	312 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	ZNF418	Q8TF45	676 aa	Predicted RBP	4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	RPL36AL	Q969Q0	106 aa	Known RBP	4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	ZNF488	Q96MN9	340 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	S1PR3	Q99500	378 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	RPP25	Q9BUL9	199 aa	Known RBP	4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	SLC25A2	Q9BXI2	301 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	PILRB	Q9UKJ0	227 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	EPDR1	Q9UM22	224 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131	BOK	Q9UMX3	212 aa	Predicted RBP	4.13	□□□□□ -1.75
TPM1-222	ENST00000560131		U3KQK5	164 aa		4.13	□□□□□ -1.75
TPM1-222	ENST00000560131		A0A1W2PPI3	338 aa		4.12	□□□□□ -1.75
TPM1-222	ENST00000560131		A0A1W2PRD5	423 aa		4.12	□□□□□ -1.75
TPM1-222	ENST00000560131		A0A1W2PRF3	423 aa		4.12	□□□□□ -1.75
TPM1-222	ENST00000560131		A0A1W2PRM7	423 aa		4.12	□□□□□ -1.75
TPM1-222	ENST00000560131	CHEK1	O14757	476 aa		4.12	□□□□□ -1.75
TPM1-222	ENST00000560131	SCGB2A1	O75556	95 aa		4.12	□□□□□ -1.75
TPM1-222	ENST00000560131	SCRG1	O75711	98 aa		4.12	□□□□□ -1.75
TPM1-222	ENST00000560131	FSTL3	O95633	263 aa		4.12	□□□□□ -1.75
TPM1-222	ENST00000560131	CA1	P00915	261 aa	Predicted RBP	4.12	□□□□□ -1.75
TPM1-222	ENST00000560131		P01737	135 aa		4.12	□□□□□ -1.75
TPM1-222	ENST00000560131	COX6A1	P12074	109 aa		4.12	□□□□□ -1.75
TPM1-222	ENST00000560131	CYB561	P49447	251 aa		4.12	□□□□□ -1.75
TPM1-222	ENST00000560131	RIG	Q13278	110 aa		4.12	□□□□□ -1.75
TPM1-222	ENST00000560131	GUSBP1	Q15486	140 aa		4.12	□□□□□ -1.75
TPM1-222	ENST00000560131	ZNF841	Q6ZN19	808 aa		4.12	□□□□□ -1.75
TPM1-222	ENST00000560131	ACP7	Q6ZNF0	438 aa		4.12	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms