RNA–Protein interactions for RNA: ENST00000560131.1

TPM1-222, Transcript of tropomyosin 1, human

TSL 2

Gene TPM1, Length 537 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-222	ENST00000560131	AEBP2	Q6ZN18	517 aa	Predicted RBP	21.8	■■□□□ 1.08
TPM1-222	ENST00000560131	CHIC1	Q5VXU3	224 aa		20.43	■□□□□ 0.86
TPM1-222	ENST00000560131	SENP3	Q9H4L4	574 aa	Predicted RBP	18.75	■□□□□ 0.59
TPM1-222	ENST00000560131	PHF23	Q9BUL5	403 aa	Predicted RBP	18.41	■□□□□ 0.54
TPM1-222	ENST00000560131	FOXD1	Q16676	465 aa		17.52	■□□□□ 0.4
TPM1-222	ENST00000560131	POTED	Q86YR6	584 aa		17.33	■□□□□ 0.36
TPM1-222	ENST00000560131	MSH5	O43196	834 aa		16.68	■□□□□ 0.26
TPM1-222	ENST00000560131	PIAS4	Q8N2W9	510 aa	Predicted RBP	16.23	■□□□□ 0.19
TPM1-222	ENST00000560131	PPP6R1	Q9UPN7	881 aa		15.89	■□□□□ 0.13
TPM1-222	ENST00000560131	ADRA2B	P18089	450 aa		15.81	■□□□□ 0.12
TPM1-222	ENST00000560131	PLPPR3	Q6T4P5	718 aa		15.81	■□□□□ 0.12
TPM1-222	ENST00000560131	DMRT2	Q9Y5R5	561 aa		14.75	□□□□□ -0.05
TPM1-222	ENST00000560131	MAPK8IP2	Q13387	824 aa	Predicted RBP	14.72	□□□□□ -0.05
TPM1-222	ENST00000560131	CACNB1	Q02641	598 aa	Predicted RBP	14.71	□□□□□ -0.05
TPM1-222	ENST00000560131	SCAF1	Q9H7N4	1312 aa	Known RBP	14.54	□□□□□ -0.08
TPM1-222	ENST00000560131	DCAF8L1	A6NGE4	600 aa		14.21	□□□□□ -0.13
TPM1-222	ENST00000560131	RNF39	Q9H2S5	420 aa		14.14	□□□□□ -0.15
TPM1-222	ENST00000560131	HOXD11	P31277	338 aa	Predicted RBP	13.96	□□□□□ -0.17
TPM1-222	ENST00000560131	C1QBP	Q07021	282 aa	Known RBP	13.94	□□□□□ -0.18
TPM1-222	ENST00000560131	PPP4R3CP	Q6ZMV5	832 aa		13.77	□□□□□ -0.21
TPM1-222	ENST00000560131	RNF216	Q9NWF9	866 aa	Predicted RBP	13.7	□□□□□ -0.22
TPM1-222	ENST00000560131	CNKSR2	Q8WXI2	1034 aa		13.67	□□□□□ -0.22
TPM1-222	ENST00000560131	DNAJC5B	Q9UF47	199 aa		13.63	□□□□□ -0.23
TPM1-222	ENST00000560131	POTEH	Q6S545	545 aa		13.46	□□□□□ -0.25
TPM1-222	ENST00000560131	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.33	□□□□□ -0.28
TPM1-222	ENST00000560131	NCBP3	Q53F19	620 aa	Known RBP	13.09	□□□□□ -0.31
TPM1-222	ENST00000560131	DSG3	P32926	999 aa		13.03	□□□□□ -0.32
TPM1-222	ENST00000560131	CAPN15	O75808	1086 aa		12.99	□□□□□ -0.33
TPM1-222	ENST00000560131	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.94	□□□□□ -0.34
TPM1-222	ENST00000560131		U3KPZ7	1027 aa	Predicted RBP	12.93	□□□□□ -0.34
TPM1-222	ENST00000560131	NPM3	O75607	178 aa	Known RBP	12.83	□□□□□ -0.36
TPM1-222	ENST00000560131	TRH	P20396	242 aa	Predicted RBP	12.62	□□□□□ -0.39
TPM1-222	ENST00000560131	ABCB7	O75027	752 aa		12.6	□□□□□ -0.39
TPM1-222	ENST00000560131	APLP2	Q06481	763 aa		12.58	□□□□□ -0.4
TPM1-222	ENST00000560131	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.58	□□□□□ -0.4
TPM1-222	ENST00000560131	KCNA4	P22459	653 aa		12.53	□□□□□ -0.4
TPM1-222	ENST00000560131	RBM42	Q9BTD8	480 aa	Known RBP	12.49	□□□□□ -0.41
TPM1-222	ENST00000560131	CHRDL2	Q6WN34	429 aa		12.45	□□□□□ -0.42
TPM1-222	ENST00000560131	EHMT2	Q96KQ7	1210 aa		12.44	□□□□□ -0.42
TPM1-222	ENST00000560131	SLC4A2	P04920	1241 aa		12.42	□□□□□ -0.42
TPM1-222	ENST00000560131	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.41	□□□□□ -0.42
TPM1-222	ENST00000560131	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.41	□□□□□ -0.42
TPM1-222	ENST00000560131	SP7	Q8TDD2	431 aa	Predicted RBP	12.32	□□□□□ -0.44
TPM1-222	ENST00000560131	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.3	□□□□□ -0.44
TPM1-222	ENST00000560131	POLA2	Q14181	598 aa		12.13	□□□□□ -0.47
TPM1-222	ENST00000560131	AKT1S1	Q96B36	256 aa		12.06	□□□□□ -0.48
TPM1-222	ENST00000560131	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.06	□□□□□ -0.48
TPM1-222	ENST00000560131	CSRNP3	Q8WYN3	585 aa		12.03	□□□□□ -0.48
TPM1-222	ENST00000560131	PIP4P2	Q8N4L2	257 aa		12	□□□□□ -0.49
TPM1-222	ENST00000560131	HAX1	O00165	279 aa		11.99	□□□□□ -0.49
TPM1-222	ENST00000560131	REM2	Q8IYK8	340 aa	Predicted RBP	11.93	□□□□□ -0.5
TPM1-222	ENST00000560131	MYCN	P04198	464 aa	Predicted RBP	11.91	□□□□□ -0.5
TPM1-222	ENST00000560131	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.86	□□□□□ -0.51
TPM1-222	ENST00000560131	FXR2	P51116	673 aa	Known RBP eCLIP	11.84	□□□□□ -0.51
TPM1-222	ENST00000560131	PITPNM1	O00562	1244 aa		11.8	□□□□□ -0.52
TPM1-222	ENST00000560131	EVX2	Q03828	476 aa		11.74	□□□□□ -0.53
TPM1-222	ENST00000560131	OSCAR	Q8IYS5	282 aa		11.74	□□□□□ -0.53
TPM1-222	ENST00000560131	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.64	□□□□□ -0.55
TPM1-222	ENST00000560131	LHX8	Q68G74	356 aa		11.57	□□□□□ -0.56
TPM1-222	ENST00000560131	ZBTB22	O15209	634 aa		11.53	□□□□□ -0.56
TPM1-222	ENST00000560131	PRKAR2A	P13861	404 aa	Known RBP	11.5	□□□□□ -0.57
TPM1-222	ENST00000560131	C19orf67	A6NJJ6	358 aa		11.48	□□□□□ -0.57
TPM1-222	ENST00000560131	GABBR2	O75899	941 aa		11.47	□□□□□ -0.57
TPM1-222	ENST00000560131	FOXD4L1	Q9NU39	408 aa		11.44	□□□□□ -0.58
TPM1-222	ENST00000560131	SPDYE2B	A6NHP3	402 aa		11.43	□□□□□ -0.58
TPM1-222	ENST00000560131	SPDYE6	P0CI01	402 aa		11.43	□□□□□ -0.58
TPM1-222	ENST00000560131	SPDYE2	Q495Y8	402 aa		11.43	□□□□□ -0.58
TPM1-222	ENST00000560131	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.4	□□□□□ -0.58
TPM1-222	ENST00000560131	CLEC11A	Q9Y240	323 aa		11.4	□□□□□ -0.58
TPM1-222	ENST00000560131	PLSCR2	Q9NRY7	297 aa		11.36	□□□□□ -0.59
TPM1-222	ENST00000560131	FBLN2	P98095	1184 aa		11.3	□□□□□ -0.6
TPM1-222	ENST00000560131	CHADL	Q6NUI6	762 aa		11.22	□□□□□ -0.61
TPM1-222	ENST00000560131	POTEI	P0CG38	1075 aa		11.2	□□□□□ -0.62
TPM1-222	ENST00000560131	ZNF692	Q9BU19	519 aa	Predicted RBP	11.2	□□□□□ -0.62
TPM1-222	ENST00000560131	SSUH2	Q9Y2M2	353 aa		11.18	□□□□□ -0.62
TPM1-222	ENST00000560131	ATXN8OS	P0DMR3	200 aa		11.17	□□□□□ -0.62
TPM1-222	ENST00000560131	PRR29	P0C7W0	189 aa		11.14	□□□□□ -0.63
TPM1-222	ENST00000560131	CLCN6	P51797	869 aa		11.13	□□□□□ -0.63
TPM1-222	ENST00000560131	CD44	P16070	742 aa	Known RBP	11.1	□□□□□ -0.63
TPM1-222	ENST00000560131	MKRN4P	Q13434	485 aa	Predicted RBP	11.08	□□□□□ -0.64
TPM1-222	ENST00000560131	DCBLD2	Q96PD2	775 aa		11.06	□□□□□ -0.64
TPM1-222	ENST00000560131	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.03	□□□□□ -0.64
TPM1-222	ENST00000560131	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.02	□□□□□ -0.65
TPM1-222	ENST00000560131	SLC24A1	O60721	1099 aa		11.01	□□□□□ -0.65
TPM1-222	ENST00000560131	RTN4	Q9NQC3	1192 aa	Known RBP	11	□□□□□ -0.65
TPM1-222	ENST00000560131	PABPN1	Q86U42	306 aa	Known RBP eCLIP	10.99	□□□□□ -0.65
TPM1-222	ENST00000560131	OTUD5	Q96G74	571 aa		10.92	□□□□□ -0.66
TPM1-222	ENST00000560131	POTEM	A6NI47	508 aa		10.91	□□□□□ -0.66
TPM1-222	ENST00000560131	ZNF579	Q8NAF0	562 aa	Known RBP	10.9	□□□□□ -0.66
TPM1-222	ENST00000560131	POTEG	Q6S5H5	508 aa		10.86	□□□□□ -0.67
TPM1-222	ENST00000560131	ZRANB1	Q9UGI0	708 aa		10.86	□□□□□ -0.67
TPM1-222	ENST00000560131	FKBP8	Q14318	412 aa		10.82	□□□□□ -0.68
TPM1-222	ENST00000560131	PCDH10	Q9P2E7	1040 aa		10.82	□□□□□ -0.68
TPM1-222	ENST00000560131	POTEB2	H3BUK9	544 aa		10.81	□□□□□ -0.68
TPM1-222	ENST00000560131	GALR2	O43603	387 aa	Predicted RBP	10.79	□□□□□ -0.68
TPM1-222	ENST00000560131	CREBZF	Q9NS37	354 aa		10.67	□□□□□ -0.7
TPM1-222	ENST00000560131	PAK3	O75914	559 aa	Predicted RBP	10.66	□□□□□ -0.7
TPM1-222	ENST00000560131	PELP1	Q8IZL8	1130 aa	Known RBP	10.64	□□□□□ -0.71
TPM1-222	ENST00000560131	PHF12	Q96QT6	1004 aa		10.62	□□□□□ -0.71
TPM1-222	ENST00000560131	STAG3	Q9UJ98	1225 aa		10.61	□□□□□ -0.71

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