RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 SLC25A39Q9BZJ4 359 aaPredicted RBP10.74□□□□□ -0.69
PTPRF-215ENST00000496447 FAM223BA6NKX1 122 aa10.74□□□□□ -0.69
PTPRF-215ENST00000496447 NPIPB5A8MRT5 1133 aa10.74□□□□□ -0.69
PTPRF-215ENST00000496447 GATA3P23771 443 aa10.74□□□□□ -0.69
PTPRF-215ENST00000496447 FAM223AQ8IWN6 122 aa10.74□□□□□ -0.69
PTPRF-215ENST00000496447 MAPK1IP1LQ8NDC0 245 aa10.74□□□□□ -0.69
PTPRF-215ENST00000496447 SLC25A2Q9BXI2 301 aa10.74□□□□□ -0.69
PTPRF-215ENST00000496447 F2Z2F3 143 aa10.74□□□□□ -0.69
PTPRF-215ENST00000496447 TRAV8-4A0A0B4J246 113 aa10.73□□□□□ -0.69
PTPRF-215ENST00000496447 C11orf68Q9H3H3 251 aaKnown RBP10.73□□□□□ -0.69
PTPRF-215ENST00000496447 TRGV1A0A0A0MS02 117 aa10.73□□□□□ -0.69
PTPRF-215ENST00000496447 TRAV3A0A0B4J244 114 aa10.73□□□□□ -0.69
PTPRF-215ENST00000496447 NAPSAO96009 420 aa10.73□□□□□ -0.69
PTPRF-215ENST00000496447 PRTN3P24158 256 aa10.73□□□□□ -0.69
PTPRF-215ENST00000496447 RUSC1-AS1Q66K80 236 aa10.73□□□□□ -0.69
PTPRF-215ENST00000496447 Q6P435 159 aa10.73□□□□□ -0.69
PTPRF-215ENST00000496447 C9orf139Q6ZV77 190 aa10.73□□□□□ -0.69
PTPRF-215ENST00000496447 COQ2Q96H96 371 aa10.73□□□□□ -0.69
PTPRF-215ENST00000496447 SIGLEC9Q9Y336 463 aa10.73□□□□□ -0.69
PTPRF-215ENST00000496447 COL4A6Q14031 1691 aa10.73□□□□□ -0.69
PTPRF-215ENST00000496447 TRGV9Q99603 122 aa10.73□□□□□ -0.69
PTPRF-215ENST00000496447 RASL11AQ6T310 242 aa10.73□□□□□ -0.69
PTPRF-215ENST00000496447 ATP5L2Q7Z4Y8 100 aa10.73□□□□□ -0.69
PTPRF-215ENST00000496447 HOXA3O43365 443 aaPredicted RBP10.72□□□□□ -0.69
PTPRF-215ENST00000496447 PPBPP02775 128 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 EVI2AP22794 236 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 FXYD7P58549 80 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 MST1LQ2TV78 715 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 PLA2G2CQ5R387 149 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 IGFL3Q6UXB1 125 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 PGPEP1Q9NXJ5 209 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 FCN3O75636 299 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 C3orf79P0CE67 100 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 HGFACQ04756 655 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 ORMDL2Q53FV1 153 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 GGTLC1Q9BX51 225 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 C1QTNF4Q9BXJ3 329 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 SLC25A20O43772 301 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 SRRM4A7MD48 611 aaKnown RBP10.72□□□□□ -0.69
PTPRF-215ENST00000496447 KIF26BQ2KJY2 2108 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 ASCL4Q6XD76 172 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 EXOC3-AS1Q8N2X6 119 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 RPRMLQ8N4K4 120 aa10.72□□□□□ -0.69
PTPRF-215ENST00000496447 NXT2Q9NPJ8 142 aaKnown RBP10.72□□□□□ -0.69
PTPRF-215ENST00000496447 OCC1Q8TAD7 63 aa10.71□□□□□ -0.69
PTPRF-215ENST00000496447 MRPL27Q9P0M9 148 aaKnown RBP10.71□□□□□ -0.69
PTPRF-215ENST00000496447 IGHV3-73A0A0B4J1V6 119 aa10.71□□□□□ -0.69
PTPRF-215ENST00000496447 CITED1Q99966 193 aa10.71□□□□□ -0.69
PTPRF-215ENST00000496447 VSIRQ9H7M9 311 aa10.71□□□□□ -0.69
PTPRF-215ENST00000496447 TRAV12-3A0A0B4J271 114 aa10.71□□□□□ -0.7
PTPRF-215ENST00000496447 CACNA1DQ01668 2161 aa10.71□□□□□ -0.7
PTPRF-215ENST00000496447 HBDP02042 147 aa10.71□□□□□ -0.7
PTPRF-215ENST00000496447 NBL1P41271 181 aa10.71□□□□□ -0.7
PTPRF-215ENST00000496447 SPINK8P0C7L1 97 aa10.7□□□□□ -0.7
PTPRF-215ENST00000496447 ATP6V0BQ99437 205 aa10.7□□□□□ -0.7
PTPRF-215ENST00000496447 TRBV6-6A0A0A6YYG2 114 aa10.7□□□□□ -0.7
PTPRF-215ENST00000496447 LY6G6EA0A0G2JKS1 128 aa10.7□□□□□ -0.7
PTPRF-215ENST00000496447 INSP01308 110 aa10.7□□□□□ -0.7
PTPRF-215ENST00000496447 IGHV3-53P01767 116 aa10.7□□□□□ -0.7
PTPRF-215ENST00000496447 SPATA31B1PQ5VZV4 182 aa10.7□□□□□ -0.7
PTPRF-215ENST00000496447 UBE2E2Q96LR5 201 aa10.7□□□□□ -0.7
PTPRF-215ENST00000496447 RHPN1-AS1Q9BWJ2 59 aa10.7□□□□□ -0.7
PTPRF-215ENST00000496447 U3KQA8 63 aa10.7□□□□□ -0.7
PTPRF-215ENST00000496447 SPTBN1Q01082 2364 aaKnown RBP10.7□□□□□ -0.7
PTPRF-215ENST00000496447 MYO7BQ6PIF6 2116 aa10.7□□□□□ -0.7
PTPRF-215ENST00000496447 LINC00473A8K010 186 aa10.7□□□□□ -0.7
PTPRF-215ENST00000496447 LHFPL1Q86WI0 220 aa10.7□□□□□ -0.7
PTPRF-215ENST00000496447 ZNF138P52744 262 aa10.7□□□□□ -0.7
PTPRF-215ENST00000496447 FOXL2NBQ6ZUU3 175 aa10.7□□□□□ -0.7
PTPRF-215ENST00000496447 DTX1Q86Y01 620 aa10.7□□□□□ -0.7
PTPRF-215ENST00000496447 RNF182Q8N6D2 247 aa10.7□□□□□ -0.7
PTPRF-215ENST00000496447 PSCAO43653 123 aa10.69□□□□□ -0.7
PTPRF-215ENST00000496447 IGKV1-5P01602 117 aa10.69□□□□□ -0.7
PTPRF-215ENST00000496447 RPL36AP83881 106 aaKnown RBP10.69□□□□□ -0.7
PTPRF-215ENST00000496447 LINC01551Q86U37 167 aa10.69□□□□□ -0.7
PTPRF-215ENST00000496447 TMEM190Q8WZ59 177 aa10.69□□□□□ -0.7
PTPRF-215ENST00000496447 RPL36ALQ969Q0 106 aaKnown RBP10.69□□□□□ -0.7
PTPRF-215ENST00000496447 UBE2E1P51965 193 aa10.69□□□□□ -0.7
PTPRF-215ENST00000496447 SYNJ2BPP57105 145 aa10.69□□□□□ -0.7
PTPRF-215ENST00000496447 PRSS33Q8NF86 280 aa10.69□□□□□ -0.7
PTPRF-215ENST00000496447 TSKUQ8WUA8 353 aa10.69□□□□□ -0.7
PTPRF-215ENST00000496447 GHRHP01286 108 aa10.69□□□□□ -0.7
PTPRF-215ENST00000496447 LINC01559Q495D7 138 aa10.69□□□□□ -0.7
PTPRF-215ENST00000496447 DPM2O94777 84 aa10.69□□□□□ -0.7
PTPRF-215ENST00000496447 C5orf24Q7Z6I8 188 aa10.69□□□□□ -0.7
PTPRF-215ENST00000496447 MGST2Q99735 147 aa10.69□□□□□ -0.7
PTPRF-215ENST00000496447 OVOL3O00110 214 aa10.68□□□□□ -0.7
PTPRF-215ENST00000496447 LINC00477Q96M19 166 aa10.68□□□□□ -0.7
PTPRF-215ENST00000496447 DAZ1Q9NQZ3 744 aaKnown RBP10.68□□□□□ -0.7
PTPRF-215ENST00000496447 POLEQ07864 2286 aa10.68□□□□□ -0.7
PTPRF-215ENST00000496447 SSBP2P81877 361 aaPredicted RBP10.68□□□□□ -0.7
PTPRF-215ENST00000496447 FREM3P0C091 2139 aa10.68□□□□□ -0.7
PTPRF-215ENST00000496447 KIR3DS1Q14943 382 aa10.68□□□□□ -0.7
PTPRF-215ENST00000496447 SUPT4H1P63272 117 aaKnown RBP10.68□□□□□ -0.7
PTPRF-215ENST00000496447 CHTOPQ9Y3Y2 248 aaKnown RBP10.68□□□□□ -0.7
PTPRF-215ENST00000496447 IGHV1-69DA0A0B4J2H0 117 aa10.68□□□□□ -0.7
PTPRF-215ENST00000496447 MMP23AO75900 390 aa10.68□□□□□ -0.7
PTPRF-215ENST00000496447 IGHV1-69P01742 117 aa10.68□□□□□ -0.7
PTPRF-215ENST00000496447 Q71RC1 249 aaPredicted RBP10.68□□□□□ -0.7
PTPRF-215ENST00000496447 LY96Q9Y6Y9 160 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 195 ms