RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 TIMM21Q9BVV7 248 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 BUB1B-PAK6H3BSN5 160 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 J3QKU1 62 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 HEPN1Q6WQI6 88 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 FAM19A2Q8N3H0 131 aa5.66□□□□□ -1.5
SCN1A-204ENST00000423058 LSM4Q9Y4Z0 139 aaKnown RBP5.66□□□□□ -1.5
SCN1A-204ENST00000423058 DSCAMO60469 2012 aa5.65□□□□□ -1.5
SCN1A-204ENST00000423058 RPL15P61313 204 aaKnown RBP5.65□□□□□ -1.5
SCN1A-204ENST00000423058 HSD52Q0P140 79 aa5.65□□□□□ -1.5
SCN1A-204ENST00000423058 PRIMA1Q86XR5 153 aa5.65□□□□□ -1.5
SCN1A-204ENST00000423058 MSMBP08118 114 aa5.65□□□□□ -1.5
SCN1A-204ENST00000423058 NMBP08949 121 aa5.65□□□□□ -1.5
SCN1A-204ENST00000423058 VWC2Q2TAL6 325 aa5.65□□□□□ -1.5
SCN1A-204ENST00000423058 SIGMAR1Q99720 223 aa5.65□□□□□ -1.5
SCN1A-204ENST00000423058 RFNGQ9Y644 331 aa5.65□□□□□ -1.5
SCN1A-204ENST00000423058 RIPPLY3P57055 190 aa5.65□□□□□ -1.5
SCN1A-204ENST00000423058 EFNB3Q15768 340 aa5.65□□□□□ -1.5
SCN1A-204ENST00000423058 SAMD5Q5TGI4 173 aa5.65□□□□□ -1.5
SCN1A-204ENST00000423058 C2orf82Q6UX34 121 aa5.65□□□□□ -1.5
SCN1A-204ENST00000423058 C18orf12Q96KH6 178 aa5.65□□□□□ -1.5
SCN1A-204ENST00000423058 IGLV3-12A0A075B6K2 115 aa5.65□□□□□ -1.51
SCN1A-204ENST00000423058 IGKV2-40A0A087WW87 121 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-204ENST00000423058 PMS2P5A8MQ11 134 aa5.65□□□□□ -1.51
SCN1A-204ENST00000423058 IGKV2D-40P01614 121 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-204ENST00000423058 ATP5G3P48201 142 aa5.65□□□□□ -1.51
SCN1A-204ENST00000423058 CD300EQ496F6 205 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-204ENST00000423058 C4orf48Q5BLP8 95 aa5.65□□□□□ -1.51
SCN1A-204ENST00000423058 SPATA31B1PQ5VZV4 182 aa5.65□□□□□ -1.51
SCN1A-204ENST00000423058 Q96MF0 132 aa5.65□□□□□ -1.51
SCN1A-204ENST00000423058 A0A1B0GWJ7 208 aa5.65□□□□□ -1.51
SCN1A-204ENST00000423058 DMRTA1Q5VZB9 504 aa5.65□□□□□ -1.51
SCN1A-204ENST00000423058 LY6G5BQ8NDX9 201 aa5.65□□□□□ -1.51
SCN1A-204ENST00000423058 WBP1Q96G27 269 aa5.65□□□□□ -1.51
SCN1A-204ENST00000423058 CSTL1Q9H114 145 aa5.65□□□□□ -1.51
SCN1A-204ENST00000423058 A0A0G2JNJ9 132 aa5.65□□□□□ -1.51
SCN1A-204ENST00000423058 TMEM158Q8WZ71 300 aa5.65□□□□□ -1.51
SCN1A-204ENST00000423058 TMEM242Q9NWH2 141 aa5.65□□□□□ -1.51
SCN1A-204ENST00000423058 Q9UFV3 132 aa5.65□□□□□ -1.51
SCN1A-204ENST00000423058 RPUSD1Q9UJJ7 312 aaKnown RBP5.65□□□□□ -1.51
SCN1A-204ENST00000423058 LAMTOR2Q9Y2Q5 125 aa5.65□□□□□ -1.51
SCN1A-204ENST00000423058 HCFC1P51610 2035 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 LYNX1G3V0Z9 82 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 LYNX1P0DP58 116 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 PPIFP30405 207 aaKnown RBP5.64□□□□□ -1.51
SCN1A-204ENST00000423058 LINC01590Q5TEZ4 76 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 NDUFS5O43920 106 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 ESDP10768 282 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 H2BFSP57053 126 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 GAGE2BQ13066 116 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 ZNF474Q6S9Z5 364 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-204ENST00000423058 H3BUT2 72 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 FAM219BQ5XKK7 198 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 FBLN5Q9UBX5 448 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 IGLV3-32A0A0A0MS00 114 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 PRB3Q04118 309 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-204ENST00000423058 ZFP36L1Q07352 338 aaKnown RBP5.64□□□□□ -1.51
SCN1A-204ENST00000423058 C1QL2Q7Z5L3 287 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 FNDC4Q9H6D8 234 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-204ENST00000423058 MED13Q9UHV7 2174 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 WISP3O95389 354 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-204ENST00000423058 ZNF525Q8N782 197 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 SIPA1L1O43166 1804 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 TRAV13-1A0A0B4J241 112 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 ZNF250P15622 560 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 SSBP2P81877 361 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-204ENST00000423058 SRSF2Q01130 221 aaKnown RBP5.64□□□□□ -1.51
SCN1A-204ENST00000423058 NHLRC3Q5JS37 347 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 ST6GALNAC6Q969X2 333 aa5.64□□□□□ -1.51
SCN1A-204ENST00000423058 UBE2BP63146 152 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 PSG3Q16557 428 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 FAM110DQ8TAY7 271 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-204ENST00000423058 RNF223E7ERA6 249 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 SOCS3O14543 225 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 RAMP1O60894 148 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 SFTA2Q6UW10 78 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 A8MXK9 166 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 IGHG3P01860 377 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 CLPSP04118 112 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 SAA4P35542 130 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 PDE6HQ13956 83 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 LINC00518Q8N0U6 118 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 LINC00527Q9UJ94 153 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 MLNRO43193 412 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 AZU1P20160 251 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 BRD3OSQ6XYD6 125 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 SPRED2Q7Z698 418 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 TMEM256Q8N2U0 113 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 ZNF479Q96JC4 524 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 NCOR1P1Q9H4R4 102 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 PLAC1Q9HBJ0 212 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 MSRB2Q9Y3D2 182 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 TAL2Q16559 108 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 NEGR1Q7Z3B1 354 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 WNK1Q9H4A3 2382 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 SRRM5B3KS81 715 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 ADMP35318 185 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 LIME1Q9H400 295 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 ARHGAP21Q5T5U3 1957 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 DENND4CQ5VZ89 1909 aa5.63□□□□□ -1.51
SCN1A-204ENST00000423058 SRP19P09132 144 aaKnown RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms