RNA–Protein interactions for RNA: ENST00000409672.5

SCN9A-203, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SCN9A, Length 9,768 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-203ENST00000409672 FAM90A24PP0C7X0 464 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 PLNP26678 52 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 RNASE13Q5GAN3 156 aaKnown RBP6.9□□□□□ -1.3
SCN9A-203ENST00000409672 C1QL4Q86Z23 238 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 MCRIP2Q9BUT9 160 aaKnown RBP6.9□□□□□ -1.3
SCN9A-203ENST00000409672 IGKV1-39P01597 117 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 IGKV1D-39P04432 117 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 CACNG8Q8WXS5 425 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 ATP6V0BQ99437 205 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 RHPN1-AS1Q9BWJ2 59 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 SNHG12Q9BXW3 62 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 EPDR1Q9UM22 224 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 TRAV8-4A0A0B4J246 113 aa6.9□□□□□ -1.31
SCN9A-203ENST00000409672 BUB1B-PAK6H3BSN5 160 aa6.9□□□□□ -1.31
SCN9A-203ENST00000409672 ZNF319Q9P2F9 582 aa6.9□□□□□ -1.31
SCN9A-203ENST00000409672 LRCOL1A6NCL2 159 aa6.9□□□□□ -1.31
SCN9A-203ENST00000409672 IGKV1-5P01602 117 aa6.9□□□□□ -1.31
SCN9A-203ENST00000409672 ANGP03950 147 aaKnown RBP6.9□□□□□ -1.31
SCN9A-203ENST00000409672 TRBV7-1A0A0A6YYK4 115 aa6.9□□□□□ -1.31
SCN9A-203ENST00000409672 A6NNC1 897 aa6.9□□□□□ -1.31
SCN9A-203ENST00000409672 APOC4P55056 127 aa6.9□□□□□ -1.31
SCN9A-203ENST00000409672 TEX43Q6ZNM6 134 aa6.9□□□□□ -1.31
SCN9A-203ENST00000409672 TRAV9-2A0A087WT02 112 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 YPEL1O60688 119 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 MRPL14Q6P1L8 145 aaKnown RBP6.89□□□□□ -1.31
SCN9A-203ENST00000409672 CTHRC1Q96CG8 243 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 YPEL2Q96QA6 119 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 GZMMP51124 257 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 TMEM30BQ3MIR4 351 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 PRTN3P24158 256 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 FREM1Q5H8C1 2179 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 TRAV12-1A0A0B4J245 112 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 hADV29S1A0JD25 119 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 H3BUT2 72 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 DPM2O94777 84 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 LINC00299Q6ZSB3 139 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 TRAV8-1A0A0A6YYK1 113 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 A0A1B0GV90 55 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 NR2C2APQ86WQ0 139 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 TRAV8-3A0A0A6YYJ7 113 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 OVOL1O14753 267 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.89□□□□□ -1.31
SCN9A-203ENST00000409672 G3V318 75 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 COL24A1Q17RW2 1714 aa6.89□□□□□ -1.31
SCN9A-203ENST00000409672 TRBV5-7A0A0A0MS05 114 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 ZFP36L1Q07352 338 aaKnown RBP6.88□□□□□ -1.31
SCN9A-203ENST00000409672 SPATA31B1PQ5VZV4 182 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 PVRIGQ6DKI7 326 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 TAL2Q16559 108 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 MLANAQ16655 118 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 C1QTNF4Q9BXJ3 329 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 DSCAML1Q8TD84 2053 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 NBASA2RRP1 2371 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 IGKCP01834 107 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 LAGE3Q14657 143 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 ZNF660Q6AZW8 331 aaPredicted RBP6.88□□□□□ -1.31
SCN9A-203ENST00000409672 MEGF9Q9H1U4 602 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 MS4A6AQ9H2W1 248 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 LINC01590Q5TEZ4 76 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 ZNF345Q14585 488 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 TCTEX1D4Q5JR98 221 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 VWA8A3KMH1 1905 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 D6R8Y8 96 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 TNFSF13O75888 250 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 TIMP3P35625 211 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 HAPLN4Q86UW8 402 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 MED12LQ86YW9 2145 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 CD177Q8N6Q3 437 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 DERL1Q9BUN8 251 aa6.88□□□□□ -1.31
SCN9A-203ENST00000409672 IZUMO1RA6ND01 250 aa6.87□□□□□ -1.31
SCN9A-203ENST00000409672 DANCRP0C864 163 aa6.87□□□□□ -1.31
SCN9A-203ENST00000409672 K7ENP7 123 aa6.87□□□□□ -1.31
SCN9A-203ENST00000409672 CMC4P56277 68 aaPredicted RBP6.87□□□□□ -1.31
SCN9A-203ENST00000409672 MORN3Q6PF18 240 aaPredicted RBP6.87□□□□□ -1.31
SCN9A-203ENST00000409672 PRIMA1Q86XR5 153 aa6.87□□□□□ -1.31
SCN9A-203ENST00000409672 BMPERQ8N8U9 685 aa6.87□□□□□ -1.31
SCN9A-203ENST00000409672 DEFB4AO15263 64 aa6.87□□□□□ -1.31
SCN9A-203ENST00000409672 PUSL1Q8N0Z8 303 aaKnown RBP6.87□□□□□ -1.31
SCN9A-203ENST00000409672 TMEM14DPA8MWL7 114 aa6.87□□□□□ -1.31
SCN9A-203ENST00000409672 VWC2Q2TAL6 325 aa6.87□□□□□ -1.31
SCN9A-203ENST00000409672 NIT1Q86X76 327 aa6.87□□□□□ -1.31
SCN9A-203ENST00000409672 DTX1Q86Y01 620 aa6.87□□□□□ -1.31
SCN9A-203ENST00000409672 RTBDNQ9BSG5 229 aaPredicted RBP6.87□□□□□ -1.31
SCN9A-203ENST00000409672 ERVH48-1M5A8F1 160 aa6.87□□□□□ -1.31
SCN9A-203ENST00000409672 ATP6V0E1O15342 81 aa6.87□□□□□ -1.31
SCN9A-203ENST00000409672 SPTAN1Q13813 2472 aaKnown RBP6.86□□□□□ -1.31
SCN9A-203ENST00000409672 TRBV5-3A0A0A0MS03 114 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 LEPROTO15243 131 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 SH2D1AO60880 128 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 EFNB3Q15768 340 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 LINC00518Q8N0U6 118 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 GHRHP01286 108 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 ATP5L2Q7Z4Y8 100 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 THSD7AQ9UPZ6 1657 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 IRF3Q14653 427 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 C1orf100Q5SVJ3 147 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 ASPHD1Q5U4P2 390 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 TBX6O95947 436 aaPredicted RBP6.86□□□□□ -1.31
SCN9A-203ENST00000409672 MST1LQ2TV78 715 aa6.86□□□□□ -1.31
SCN9A-203ENST00000409672 LYZL1Q6UWQ5 148 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms