RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIP1	YMR309C	ADR1	P07248	1323 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	NUP145	P49687	1317 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	CPA2	P03965	1118 aa	Known RBP	0.79	□□□□□ -2.28
NIP1	YMR309C	PHO2	P07269	559 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	0.79	□□□□□ -2.28	not detected
NIP1	YMR309C	GSY2	P27472	705 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	SEC65	P29478	273 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	LOT5	P34234	306 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	CKB2	P38930	258 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	BEM4	P39011	633 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	MET30	P39014	640 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	YIL092W	P40497	633 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	BUD8	P41698	603 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	TAF4	P50105	388 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	SQS1	P53866	767 aa	Known RBP	0.79	□□□□□ -2.28
NIP1	YMR309C	PTA1	Q01329	785 aa	Predicted RBP	0.79	□□□□□ -2.28
NIP1	YMR309C	TIM50	Q02776	476 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	YPL071C	Q02864	156 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	MRPL1	Q04599	285 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	FPR4	Q06205	392 aa	Predicted RBP	0.79	□□□□□ -2.28
NIP1	YMR309C	YPS7	Q06325	596 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	YLR111W	Q12528	110 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	SEC3	P33332	1336 aa	Known RBP	0.79	□□□□□ -2.28
NIP1	YMR309C	SEC12	P11655	471 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	WHI2	P12611	486 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	YAP1	P19880	650 aa	Known RBP	0.79	□□□□□ -2.28
NIP1	YMR309C	DGR2	P32330	852 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	ATO2	P32907	282 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	TYS1	P36421	394 aa	Known RBP	0.79	□□□□□ -2.28
NIP1	YMR309C	SDS24	P38314	527 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	CFD1	P40558	293 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	YJR096W	P47137	282 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	YGR054W	P53235	642 aa	Known RBP	0.79	□□□□□ -2.28
NIP1	YMR309C	COQ6	P53318	479 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	BUD17	P53727	317 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	NOP15	P53927	220 aa	Predicted RBP	0.79	□□□□□ -2.28
NIP1	YMR309C	YNL018C	P53976	612 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	AAT1	Q01802	451 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	FDC1	Q03034	503 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	RCR2	Q03446	210 aa	Known RBP	0.79	□□□□□ -2.28
NIP1	YMR309C	EFR3	Q03653	782 aa	Known RBP	0.79	□□□□□ -2.28
NIP1	YMR309C	SPN1	Q06505	410 aa	Predicted RBP	0.79	□□□□□ -2.28
NIP1	YMR309C	STP4	Q07351	490 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	YLR001C	Q07895	862 aa		0.79	□□□□□ -2.28
NIP1	YMR309C	RDL1	Q12305	139 aa	Known RBP	0.79	□□□□□ -2.28
NIP1	YMR309C	NOP14	Q99207	810 aa	Known RBP	0.79	□□□□□ -2.28
NIP1	YMR309C	BI2	P03873	423 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	BET2	P20133	325 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	YCP4	P25349	247 aa	Known RBP	0.78	□□□□□ -2.28
NIP1	YMR309C	CNE1	P27825	502 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	MRPL7	P36519	292 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	BRN1	P38170	754 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	MNN1	P39106	762 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	YMR124W	P39523	943 aa	Known RBP	0.78	□□□□□ -2.28
NIP1	YMR309C	EXO1	P39875	702 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	OPT1	P40897	799 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	MDR1	P53258	950 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	RNH70	P53331	553 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	ALG12	P53730	551 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	WAR1	Q03631	944 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	NSE5	Q03718	556 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	YOR389W	Q08912	624 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	HER1	Q12276	1246 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	YTA7	P40340	1379 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	SWI6	P09959	803 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	PCK1	P10963	549 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	GLN4	P13188	809 aa	Known RBP	0.78	□□□□□ -2.28
NIP1	YMR309C	RPL8A	P17076	256 aa	Known RBP	0.78	□□□□□ -2.28
NIP1	YMR309C	RNR3	P21672	869 aa	Known RBP	0.78	□□□□□ -2.28
NIP1	YMR309C	YOX1	P34161	385 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	RRP14	P36080	434 aa	Known RBP	0.78	□□□□□ -2.28
NIP1	YMR309C	CCL1	P37366	393 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	LNP1	P38878	278 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	CRG1	P38892	291 aa	RIP-Chip data	0.78	□□□□□ -2.28	not detected
NIP1	YMR309C	FTR1	P40088	404 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	MGS1	P40151	587 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	PRM2	P40534	656 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	VID28	P40547	921 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	HLR1	Q04429	423 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	UTP14	Q04500	899 aa	Known RBP	0.78	□□□□□ -2.28
NIP1	YMR309C	TPO3	Q06451	622 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	YCG1	Q06680	1035 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	THI73	Q07904	523 aa		0.78	□□□□□ -2.28
NIP1	YMR309C	AHA1	Q12449	350 aa	Known RBP	0.78	□□□□□ -2.28
NIP1	YMR309C	RPS21B	Q3E754	87 aa	Known RBP	0.78	□□□□□ -2.28
NIP1	YMR309C	YMR085W	P0CF18	432 aa		0.77	□□□□□ -2.29
NIP1	YMR309C	YEL076C-A	P0CX16	216 aa		0.77	□□□□□ -2.29
NIP1	YMR309C	YLR464W	P0CX17	216 aa		0.77	□□□□□ -2.29
NIP1	YMR309C	IME1	P21190	360 aa		0.77	□□□□□ -2.29
NIP1	YMR309C	AEP2	P22136	580 aa		0.77	□□□□□ -2.29
NIP1	YMR309C	AIM17	P23180	465 aa	Known RBP	0.77	□□□□□ -2.29
NIP1	YMR309C	CAP1	P28495	268 aa	Known RBP	0.77	□□□□□ -2.29
NIP1	YMR309C	PRE4	P30657	266 aa		0.77	□□□□□ -2.29
NIP1	YMR309C	DID4	P36108	232 aa		0.77	□□□□□ -2.29
NIP1	YMR309C	SCO2	P38072	301 aa		0.77	□□□□□ -2.29
NIP1	YMR309C	EHT1	P38295	451 aa		0.77	□□□□□ -2.29
NIP1	YMR309C	RTT107	P38850	1070 aa		0.77	□□□□□ -2.29
NIP1	YMR309C	MTG2	P38860	518 aa		0.77	□□□□□ -2.29
NIP1	YMR309C	YJL193W	P39542	402 aa		0.77	□□□□□ -2.29
NIP1	YMR309C	YEL076C	P39971	216 aa		0.77	□□□□□ -2.29

Retrieved 100 of 5,963 RNA–protein pairs in 22.3 ms