RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	APC1	P53886	1748 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	TY1B-NL2	Q99337	1749 aa	Known RBP	4.01	□□□□□ -1.77
NUP85	YJR042W	SIR4	P11978	1358 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	NUC1	P08466	329 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	SLA2	P33338	968 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	GCS1	P35197	352 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	FTH1	P38310	465 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	HSM3	P38348	480 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	NPR3	P38742	1146 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	YER156C	P40093	338 aa	Known RBP	4.01	□□□□□ -1.77
NUP85	YJR042W	YIL161W	P40449	235 aa	Known RBP	4.01	□□□□□ -1.77
NUP85	YJR042W	VID28	P40547	921 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	PTK2	P47116	818 aa	Known RBP	4.01	□□□□□ -1.77
NUP85	YJR042W	BNA2	P47125	453 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	PSP1	P50896	841 aa	Known RBP	4.01	□□□□□ -1.77
NUP85	YJR042W	MSN5	P52918	1224 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	DUO1	P53168	247 aa	Known RBP	4.01	□□□□□ -1.77
NUP85	YJR042W	BIO5	P53744	561 aa	Known RBP	4.01	□□□□□ -1.77
NUP85	YJR042W	PTA1	Q01329	785 aa	Predicted RBP	4.01	□□□□□ -1.77
NUP85	YJR042W	ARV1	Q06541	321 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	YOR059C	Q08448	450 aa	Known RBP	4.01	□□□□□ -1.77
NUP85	YJR042W	PSY3	Q12318	242 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	PDH1	Q12428	516 aa	Known RBP	4.01	□□□□□ -1.77
NUP85	YJR042W	MIS1	P09440	975 aa	Known RBP	4	□□□□□ -1.77
NUP85	YJR042W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4	□□□□□ -1.77	not detected
NUP85	YJR042W	CLC1	P17891	233 aa		4	□□□□□ -1.77
NUP85	YJR042W	DBF4	P32325	704 aa		4	□□□□□ -1.77
NUP85	YJR042W	TGL1	P34163	548 aa		4	□□□□□ -1.77
NUP85	YJR042W	ADH5	P38113	351 aa	Known RBP	4	□□□□□ -1.77
NUP85	YJR042W	MEF2	P39677	819 aa		4	□□□□□ -1.77
NUP85	YJR042W	YEL057C	P39983	233 aa		4	□□□□□ -1.77
NUP85	YJR042W	LSB6	P42951	607 aa		4	□□□□□ -1.77
NUP85	YJR042W	YFL052W	P43551	465 aa		4	□□□□□ -1.77
NUP85	YJR042W	MTC3	P53077	123 aa		4	□□□□□ -1.77
NUP85	YJR042W	RRP46	P53256	223 aa	Predicted RBP	4	□□□□□ -1.77
NUP85	YJR042W	DAM1	P53267	343 aa		4	□□□□□ -1.77
NUP85	YJR042W	EAF7	P53911	425 aa	Known RBP	4	□□□□□ -1.77
NUP85	YJR042W	SEC5	P89102	971 aa		4	□□□□□ -1.77
NUP85	YJR042W	YSA1	Q01976	231 aa		4	□□□□□ -1.77
NUP85	YJR042W	OAZ1	Q02803	292 aa		4	□□□□□ -1.77
NUP85	YJR042W	RMT2	Q03305	412 aa		4	□□□□□ -1.77
NUP85	YJR042W	RKM2	Q03942	479 aa		4	□□□□□ -1.77
NUP85	YJR042W	GTB1	Q04924	702 aa		4	□□□□□ -1.77
NUP85	YJR042W	SKS1	Q12505	502 aa		4	□□□□□ -1.77
NUP85	YJR042W	KAR3	P17119	729 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	ATG19	P35193	415 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	LAS1	P36146	502 aa	Predicted RBP	3.99	□□□□□ -1.77
NUP85	YJR042W	STL1	P39932	569 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	INP51	P40559	946 aa	Known RBP	3.99	□□□□□ -1.77
NUP85	YJR042W	AAD14	P42884	376 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	AGX1	P43567	385 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	TOF1	P53840	1238 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	DPB4	Q04603	196 aa	Known RBP	3.99	□□□□□ -1.77
NUP85	YJR042W	ERB1	Q04660	807 aa	Known RBP	3.99	□□□□□ -1.77
NUP85	YJR042W	AIM32	Q04689	311 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	SMD2	Q06217	110 aa	Known RBP	3.99	□□□□□ -1.77
NUP85	YJR042W	CSR1	Q06705	408 aa	Known RBP	3.99	□□□□□ -1.77
NUP85	YJR042W	YLR149C	Q99296	730 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	ADE8	P04161	214 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	SES1	P07284	462 aa	Known RBP	3.99	□□□□□ -1.77
NUP85	YJR042W	BET2	P20133	325 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	YCK2	P23292	546 aa	Known RBP	3.99	□□□□□ -1.77
NUP85	YJR042W	CAP1	P28495	268 aa	Known RBP	3.99	□□□□□ -1.77
NUP85	YJR042W	MF(ALPHA)2	P32435	120 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	NIP100	P33420	868 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	BUD16	P39988	312 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	MRX1	P40050	688 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	EFM4	P40516	257 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	STU2	P46675	888 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	AIP1	P46680	615 aa	Known RBP	3.99	□□□□□ -1.77
NUP85	YJR042W	SNF12	P53628	566 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	BRE5	P53741	515 aa	Known RBP	3.99	□□□□□ -1.77
NUP85	YJR042W	GCR2	Q01722	534 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	RSF1	Q05043	376 aa		3.99	□□□□□ -1.77
NUP85	YJR042W	PML1	Q07930	204 aa	Predicted RBP	3.99	□□□□□ -1.77
NUP85	YJR042W	GET3	Q12154	354 aa	Known RBP	3.99	□□□□□ -1.77
NUP85	YJR042W	STF1	P01098	86 aa		3.98	□□□□□ -1.77
NUP85	YJR042W	SIR1	P21691	654 aa		3.98	□□□□□ -1.77
NUP85	YJR042W	LCB1	P25045	558 aa	Known RBP	3.98	□□□□□ -1.77
NUP85	YJR042W	PRD1	P25375	712 aa		3.98	□□□□□ -1.77
NUP85	YJR042W	PAT1	P25644	796 aa	Known RBP	3.98	□□□□□ -1.77
NUP85	YJR042W	SAC6	P32599	642 aa	Known RBP	3.98	□□□□□ -1.77
NUP85	YJR042W	SPT23	P35210	1082 aa		3.98	□□□□□ -1.77
NUP85	YJR042W	MIC60	P36112	540 aa		3.98	□□□□□ -1.77
NUP85	YJR042W	SSZ1	P38788	538 aa	Known RBP	3.98	□□□□□ -1.77
NUP85	YJR042W	BEM4	P39011	633 aa		3.98	□□□□□ -1.77
NUP85	YJR042W	LYS4	P49367	693 aa	Predicted RBP	3.98	□□□□□ -1.77
NUP85	YJR042W	PSP2	P50109	593 aa	Known RBP	3.98	□□□□□ -1.77
NUP85	YJR042W	SPO1	P53541	631 aa		3.98	□□□□□ -1.77
NUP85	YJR042W	NOP15	P53927	220 aa	Predicted RBP	3.98	□□□□□ -1.77
NUP85	YJR042W	VTC3	Q02725	835 aa		3.98	□□□□□ -1.77
NUP85	YJR042W	MMR1	Q06324	491 aa		3.98	□□□□□ -1.77
NUP85	YJR042W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	3.98	□□□□□ -1.77	not detected
NUP85	YJR042W	PHO5	P00635	467 aa		3.98	□□□□□ -1.77
NUP85	YJR042W	HNM1	P19807	563 aa		3.98	□□□□□ -1.77
NUP85	YJR042W	CLB4	P24871	460 aa		3.98	□□□□□ -1.77
NUP85	YJR042W	MSC7	P38694	644 aa		3.98	□□□□□ -1.77
NUP85	YJR042W	SHU2	P38957	223 aa		3.98	□□□□□ -1.77
NUP85	YJR042W	OSW5	P40219	148 aa		3.98	□□□□□ -1.77
NUP85	YJR042W	HFM1	P51979	1187 aa		3.98	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 16.8 ms