RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ITIH3Q06033 890 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 TBC1D5Q92609 795 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 SPZ1Q9BXG8 430 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 FANCD2Q9BXW9 1451 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 DNM1Q05193 864 aaKnown RBP5.22□□□□□ -1.57
SCN1A-220ENST00000641603 FAF1Q9UNN5 650 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-220ENST00000641603 UTP11Q9Y3A2 253 aaKnown RBP5.22□□□□□ -1.57
SCN1A-220ENST00000641603 KIF21AQ7Z4S6 1674 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 E7EVH7 732 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 SLC4A8Q2Y0W8 1093 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 NGDNQ8NEJ9 315 aaKnown RBP5.22□□□□□ -1.57
SCN1A-220ENST00000641603 PDE11AQ9HCR9 933 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 SLC30A9Q6PML9 568 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 TSR2Q969E8 191 aaKnown RBP5.22□□□□□ -1.57
SCN1A-220ENST00000641603 JPH2Q9BR39 696 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-220ENST00000641603 ANKRD2Q9GZV1 360 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 BABAM1Q9NWV8 329 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 ANGPTL2Q9UKU9 493 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 PPP2R2CQ9Y2T4 447 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 HYOU1Q9Y4L1 999 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 MKRN3Q13064 507 aaKnown RBP5.22□□□□□ -1.57
SCN1A-220ENST00000641603 RETREG2Q8NC44 543 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 HAUS1Q96CS2 278 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 SIL1Q9H173 461 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 ADAM21Q9UKJ8 722 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 IARSP41252 1262 aaKnown RBP5.22□□□□□ -1.57
SCN1A-220ENST00000641603 RGS22Q8NE09 1264 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 CALML4Q96GE6 196 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 EXOC1Q9NV70 894 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 GTF2E1P29083 439 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-220ENST00000641603 MAN1A1P33908 653 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 BIRC2Q13490 618 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 RILPL1Q5EBL4 403 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 CAPZA3Q96KX2 299 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 HOMER2Q9NSB8 354 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 STOML1Q9UBI4 398 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 STK24Q9Y6E0 443 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 SRRM3A6NNA2 597 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-220ENST00000641603 CUL1Q13616 776 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 UBE4AQ14139 1066 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.22□□□□□ -1.57
SCN1A-220ENST00000641603 GUCA1BQ9UMX6 200 aa5.22□□□□□ -1.57
SCN1A-220ENST00000641603 SART1O43290 800 aaKnown RBP5.21□□□□□ -1.57
SCN1A-220ENST00000641603 STK3Q13188 491 aa5.21□□□□□ -1.57
SCN1A-220ENST00000641603 CUL3Q13618 768 aa5.21□□□□□ -1.57
SCN1A-220ENST00000641603 TTC39AQ5SRH9 613 aa5.21□□□□□ -1.57
SCN1A-220ENST00000641603 RASIP1Q5U651 963 aa5.21□□□□□ -1.57
SCN1A-220ENST00000641603 PPP1R14CQ8TAE6 165 aa5.21□□□□□ -1.57
SCN1A-220ENST00000641603 TMEM232C9JQI7 657 aa5.21□□□□□ -1.57
SCN1A-220ENST00000641603 HDGFL1Q5TGJ6 251 aa5.21□□□□□ -1.57
SCN1A-220ENST00000641603 RUFY3Q7L099 469 aa5.21□□□□□ -1.57
SCN1A-220ENST00000641603 KRI1Q8N9T8 703 aaKnown RBP5.21□□□□□ -1.57
SCN1A-220ENST00000641603 BBOF1Q8ND07 529 aa5.21□□□□□ -1.57
SCN1A-220ENST00000641603 SYNCQ9H7C4 482 aa5.21□□□□□ -1.57
SCN1A-220ENST00000641603 ARHGAP10A1A4S6 786 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 ERCC5P28715 1186 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-220ENST00000641603 PEX19P40855 299 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 CORO7P57737 925 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 HNRNPLLQ8WVV9 542 aaKnown RBP5.21□□□□□ -1.58
SCN1A-220ENST00000641603 MSL3Q8N5Y2 521 aaKnown RBP5.21□□□□□ -1.58
SCN1A-220ENST00000641603 USP6NLQ92738 828 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 HVCN1Q96D96 273 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 THOC1Q96FV9 657 aaKnown RBP5.21□□□□□ -1.58
SCN1A-220ENST00000641603 PPP1R9AQ9ULJ8 1098 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 FBXO38Q6PIJ6 1188 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 PLEKHM2Q8IWE5 1019 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 IQUBQ8NA54 791 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.21□□□□□ -1.58
SCN1A-220ENST00000641603 ENAHQ8N8S7 591 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-220ENST00000641603 NCOA7Q8NI08 942 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 NEUROD6Q96NK8 337 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 SELENOSQ9BQE4 189 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 TYW1Q9NV66 732 aaKnown RBP5.21□□□□□ -1.58
SCN1A-220ENST00000641603 PRAG1Q86YV5 1406 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 HSPA6P17066 643 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 PPP1R7Q15435 360 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 PPP1R21Q6ZMI0 780 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 TRIM42Q8IWZ5 723 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 UBA5Q9GZZ9 404 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 SBDSQ9Y3A5 250 aaKnown RBP eCLIP5.21□□□□□ -1.58
SCN1A-220ENST00000641603 UGGT2Q9NYU1 1516 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 HMGB3O15347 200 aaKnown RBP5.21□□□□□ -1.58
SCN1A-220ENST00000641603 IGSF3O75054 1194 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 ICA1Q05084 483 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 SWT1Q5T5J6 900 aaKnown RBP5.21□□□□□ -1.58
SCN1A-220ENST00000641603 VPS52Q8N1B4 723 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 SLC12A7Q9Y666 1083 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 ANO9A1A5B4 782 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 CUTAO60888 179 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 VIMP08670 466 aaKnown RBP5.21□□□□□ -1.58
SCN1A-220ENST00000641603 CALML3P27482 149 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 NNTQ13423 1086 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 AFAP1L2Q8N4X5 818 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 SPDL1Q96EA4 605 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 UIMC1Q96RL1 719 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 NAP1L4Q99733 375 aaKnown RBP5.21□□□□□ -1.58
SCN1A-220ENST00000641603 BPIFA3Q9BQP9 254 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 NUF2Q9BZD4 464 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 FAM96AQ9H5X1 160 aa5.21□□□□□ -1.58
SCN1A-220ENST00000641603 GOLGA8BA8MQT2 603 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms