RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 KIF6Q6ZMV9 814 aa23.24■■□□□ 1.31
SYNGAP1-227ENST00000638142 CCDC85AQ96PX6 553 aaPredicted RBP23.24■■□□□ 1.31
SYNGAP1-227ENST00000638142 RIPOR2Q9Y4F9 1068 aa23.24■■□□□ 1.31
SYNGAP1-227ENST00000638142 CCP110O43303 1012 aa23.23■■□□□ 1.31
SYNGAP1-227ENST00000638142 LMOD1P29536 600 aaPredicted RBP23.23■■□□□ 1.31
SYNGAP1-227ENST00000638142 PTPAQ15257 358 aa23.23■■□□□ 1.31
SYNGAP1-227ENST00000638142 TBC1D10CQ8IV04 446 aa23.23■■□□□ 1.31
SYNGAP1-227ENST00000638142 AKAP11Q9UKA4 1901 aa23.23■■□□□ 1.31
SYNGAP1-227ENST00000638142 CBFA2T2O43439 604 aa23.23■■□□□ 1.31
SYNGAP1-227ENST00000638142 UBE3CQ15386 1083 aa23.23■■□□□ 1.31
SYNGAP1-227ENST00000638142 APOA5Q6Q788 366 aa23.23■■□□□ 1.31
SYNGAP1-227ENST00000638142 TMEM87BQ96K49 555 aa23.23■■□□□ 1.31
SYNGAP1-227ENST00000638142 CDHR2Q9BYE9 1310 aa23.22■■□□□ 1.31
SYNGAP1-227ENST00000638142 MYO1BO43795 1136 aa23.22■■□□□ 1.31
SYNGAP1-227ENST00000638142 MYL5Q02045 173 aa23.22■■□□□ 1.31
SYNGAP1-227ENST00000638142 ELF2Q15723 593 aa23.22■■□□□ 1.31
SYNGAP1-227ENST00000638142 SLC9C2Q5TAH2 1124 aa23.22■■□□□ 1.31
SYNGAP1-227ENST00000638142 SHC4Q6S5L8 630 aa23.22■■□□□ 1.31
SYNGAP1-227ENST00000638142 CYB5R4Q7L1T6 521 aa23.22■■□□□ 1.31
SYNGAP1-227ENST00000638142 AIFM3Q96NN9 605 aa23.22■■□□□ 1.31
SYNGAP1-227ENST00000638142 HSD3B7Q9H2F3 369 aa23.22■■□□□ 1.31
SYNGAP1-227ENST00000638142 PRDM11Q9NQV5 511 aa23.22■■□□□ 1.31
SYNGAP1-227ENST00000638142 IL2RBP14784 551 aa23.22■■□□□ 1.31
SYNGAP1-227ENST00000638142 GNL2Q13823 731 aaKnown RBP23.22■■□□□ 1.31
SYNGAP1-227ENST00000638142 RESP18Q5W5W9 173 aa23.21■■□□□ 1.31
SYNGAP1-227ENST00000638142 LDHAL6AQ6ZMR3 332 aa23.21■■□□□ 1.31
SYNGAP1-227ENST00000638142 MAP3K14Q99558 947 aa23.21■■□□□ 1.31
SYNGAP1-227ENST00000638142 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.21■■□□□ 1.31
SYNGAP1-227ENST00000638142 NOL12Q9UGY1 213 aaKnown RBP eCLIP23.21■■□□□ 1.31
SYNGAP1-227ENST00000638142 V9GYY5 206 aaPredicted RBP23.21■■□□□ 1.31
SYNGAP1-227ENST00000638142 TEX13AQ9BXU3 409 aaPredicted RBP23.21■■□□□ 1.31
SYNGAP1-227ENST00000638142 ZNF330Q9Y3S2 320 aaPredicted RBP23.21■■□□□ 1.31
SYNGAP1-227ENST00000638142 FBXO38Q6PIJ6 1188 aa23.2■■□□□ 1.3
SYNGAP1-227ENST00000638142 FAM53CQ9NYF3 392 aa23.2■■□□□ 1.3
SYNGAP1-227ENST00000638142 COL5A2P05997 1499 aaPredicted RBP23.2■■□□□ 1.3
SYNGAP1-227ENST00000638142 CUTAO60888 179 aa23.2■■□□□ 1.3
SYNGAP1-227ENST00000638142 ATP1A3P13637 1013 aa23.2■■□□□ 1.3
SYNGAP1-227ENST00000638142 CDC27P30260 824 aa23.2■■□□□ 1.3
SYNGAP1-227ENST00000638142 TRIM29Q14134 588 aa23.2■■□□□ 1.3
SYNGAP1-227ENST00000638142 CCDC93Q567U6 631 aa23.2■■□□□ 1.3
SYNGAP1-227ENST00000638142 SYT10Q6XYQ8 523 aa23.2■■□□□ 1.3
SYNGAP1-227ENST00000638142 KRT222Q8N1A0 295 aa23.2■■□□□ 1.3
SYNGAP1-227ENST00000638142 DENND2AQ9ULE3 1009 aa23.2■■□□□ 1.3
SYNGAP1-227ENST00000638142 ZBTB43O43298 467 aa23.19■■□□□ 1.3
SYNGAP1-227ENST00000638142 UBASH3AP57075 661 aa23.19■■□□□ 1.3
SYNGAP1-227ENST00000638142 ZNF771Q7L3S4 317 aaPredicted RBP23.19■■□□□ 1.3
SYNGAP1-227ENST00000638142 SGMS1Q86VZ5 419 aa23.19■■□□□ 1.3
SYNGAP1-227ENST00000638142 SHANK3Q9BYB0 1731 aa23.19■■□□□ 1.3
SYNGAP1-227ENST00000638142 APPP05067 770 aa23.19■■□□□ 1.3
SYNGAP1-227ENST00000638142 ITGA6P23229 1130 aa23.19■■□□□ 1.3
SYNGAP1-227ENST00000638142 IARSP41252 1262 aaKnown RBP23.19■■□□□ 1.3
SYNGAP1-227ENST00000638142 TAF3Q5VWG9 929 aa23.19■■□□□ 1.3
SYNGAP1-227ENST00000638142 ISM2Q6H9L7 571 aa23.19■■□□□ 1.3
SYNGAP1-227ENST00000638142 IGSF3O75054 1194 aa23.18■■□□□ 1.3
SYNGAP1-227ENST00000638142 SLFN14P0C7P3 912 aa23.18■■□□□ 1.3
SYNGAP1-227ENST00000638142 NTRK3Q16288 839 aa23.18■■□□□ 1.3
SYNGAP1-227ENST00000638142 OLFM4Q6UX06 510 aa23.18■■□□□ 1.3
SYNGAP1-227ENST00000638142 MICU3Q86XE3 530 aa23.18■■□□□ 1.3
SYNGAP1-227ENST00000638142 TTLL11Q8NHH1 800 aa23.18■■□□□ 1.3
SYNGAP1-227ENST00000638142 PHKBQ93100 1093 aa23.18■■□□□ 1.3
SYNGAP1-227ENST00000638142 CARD10Q9BWT7 1032 aa23.18■■□□□ 1.3
SYNGAP1-227ENST00000638142 BCL11BQ9C0K0 894 aaPredicted RBP23.18■■□□□ 1.3
SYNGAP1-227ENST00000638142 B4E1Z4 1266 aa23.18■■□□□ 1.3
SYNGAP1-227ENST00000638142 SERPINC1P01008 464 aa23.18■■□□□ 1.3
SYNGAP1-227ENST00000638142 GIGYF2Q6Y7W6 1299 aaKnown RBP23.18■■□□□ 1.3
SYNGAP1-227ENST00000638142 VGLL2Q8N8G2 317 aa23.18■■□□□ 1.3
SYNGAP1-227ENST00000638142 IGDCC4Q8TDY8 1250 aa23.18■■□□□ 1.3
SYNGAP1-227ENST00000638142 PIH1D3Q9NQM4 214 aaKnown RBP23.18■■□□□ 1.3
SYNGAP1-227ENST00000638142 TBC1D2BQ9UPU7 963 aa23.18■■□□□ 1.3
SYNGAP1-227ENST00000638142 STK36Q9NRP7 1315 aa23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 STRCP1A6NGW2 1772 aa23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 ANKRD18BA2A2Z9 1011 aa23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 IDH1O75874 414 aaKnown RBP23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 RXRAP19793 462 aa23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 PNOCQ13519 176 aa23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 CCDC102BQ68D86 513 aa23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 ELOA2Q8IYF1 753 aaPredicted RBP23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 GREM2Q9H772 168 aa23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 CNNM1Q9NRU3 951 aa23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 TMOD3Q9NYL9 352 aa23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 MAP3K15Q6ZN16 1313 aa23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 PHLPP2Q6ZVD8 1323 aa23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 ZNF532Q9HCE3 1301 aa23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 ETF1P62495 437 aaKnown RBP23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 ALX1Q15699 326 aa23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 NKX2-3Q8TAU0 364 aa23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 TMX1Q9H3N1 280 aa23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 LY9Q9HBG7 655 aa23.17■■□□□ 1.3
SYNGAP1-227ENST00000638142 ECM29Q5VYK3 1845 aa23.16■■□□□ 1.3
SYNGAP1-227ENST00000638142 GOLGA8AA7E2F4 631 aa23.16■■□□□ 1.3
SYNGAP1-227ENST00000638142 PDE6AP16499 860 aa23.16■■□□□ 1.3
SYNGAP1-227ENST00000638142 NFXL1Q6ZNB6 911 aa23.16■■□□□ 1.3
SYNGAP1-227ENST00000638142 VSTM4Q8IW00 320 aa23.16■■□□□ 1.3
SYNGAP1-227ENST00000638142 ARID4AP29374 1257 aaPredicted RBP23.16■■□□□ 1.3
SYNGAP1-227ENST00000638142 LIFRP42702 1097 aa23.16■■□□□ 1.3
SYNGAP1-227ENST00000638142 CTSWP56202 376 aa23.16■■□□□ 1.3
SYNGAP1-227ENST00000638142 CFAP100Q494V2 611 aa23.16■■□□□ 1.3
SYNGAP1-227ENST00000638142 KRBA2Q6ZNG9 492 aa23.16■■□□□ 1.3
SYNGAP1-227ENST00000638142 METTL16Q86W50 562 aaKnown RBP23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 321.1 ms