RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 GPAA1O43292 621 aa21.62■■□□□ 1.05
CLN3-263ENST00000637871 SLC9C2Q5TAH2 1124 aa21.62■■□□□ 1.05
CLN3-263ENST00000637871 STOX1Q6ZVD7 989 aa21.62■■□□□ 1.05
CLN3-263ENST00000637871 USP48Q86UV5 1035 aa21.62■■□□□ 1.05
CLN3-263ENST00000637871 RGS22Q8NE09 1264 aa21.62■■□□□ 1.05
CLN3-263ENST00000637871 ZMYM6O95789 1325 aa21.62■■□□□ 1.05
CLN3-263ENST00000637871 PPIP5K2O43314 1243 aa21.62■■□□□ 1.05
CLN3-263ENST00000637871 CHGBP05060 677 aa21.62■■□□□ 1.05
CLN3-263ENST00000637871 PHKA1P46020 1223 aa21.62■■□□□ 1.05
CLN3-263ENST00000637871 SPATA5Q8NB90 893 aa21.62■■□□□ 1.05
CLN3-263ENST00000637871 LEMD3Q9Y2U8 911 aa21.62■■□□□ 1.05
CLN3-263ENST00000637871 LTBP3Q9NS15 1303 aa21.62■■□□□ 1.05
CLN3-263ENST00000637871 IRS2Q9Y4H2 1338 aa21.62■■□□□ 1.05
CLN3-263ENST00000637871 AKAP11Q9UKA4 1901 aa21.61■■□□□ 1.05
CLN3-263ENST00000637871 ZNF213O14771 459 aa21.61■■□□□ 1.05
CLN3-263ENST00000637871 FGAP02671 866 aa21.61■■□□□ 1.05
CLN3-263ENST00000637871 MYH7P12883 1935 aa21.61■■□□□ 1.05
CLN3-263ENST00000637871 IARSP41252 1262 aaKnown RBP21.61■■□□□ 1.05
CLN3-263ENST00000637871 UBE4AQ14139 1066 aa21.61■■□□□ 1.05
CLN3-263ENST00000637871 TIAM2Q8IVF5 1701 aa21.61■■□□□ 1.05
CLN3-263ENST00000637871 NCOA7Q8NI08 942 aa21.61■■□□□ 1.05
CLN3-263ENST00000637871 SMARCC2Q8TAQ2 1214 aa21.61■■□□□ 1.05
CLN3-263ENST00000637871 BRF1Q92994 677 aa21.61■■□□□ 1.05
CLN3-263ENST00000637871 GNL3LQ9NVN8 582 aaKnown RBP21.61■■□□□ 1.05
CLN3-263ENST00000637871 ZBTB22O15209 634 aa21.6■■□□□ 1.05
CLN3-263ENST00000637871 MCM5P33992 734 aa21.6■■□□□ 1.05
CLN3-263ENST00000637871 DOK7Q18PE1 504 aa21.6■■□□□ 1.05
CLN3-263ENST00000637871 GRIPAP1Q4V328 841 aa21.6■■□□□ 1.05
CLN3-263ENST00000637871 LRSAM1Q6UWE0 723 aa21.6■■□□□ 1.05
CLN3-263ENST00000637871 GAS2L3Q86XJ1 694 aa21.6■■□□□ 1.05
CLN3-263ENST00000637871 PUS7LQ9H0K6 701 aaKnown RBP21.6■■□□□ 1.05
CLN3-263ENST00000637871 ZSCAN16Q9H4T2 348 aaPredicted RBP21.6■■□□□ 1.05
CLN3-263ENST00000637871 VPS37CA5D8V6 355 aaPredicted RBP21.59■■□□□ 1.05
CLN3-263ENST00000637871 DHX16O60231 1041 aaKnown RBP21.59■■□□□ 1.05
CLN3-263ENST00000637871 GNAT2P19087 354 aa21.59■■□□□ 1.05
CLN3-263ENST00000637871 GYG1P46976 350 aa21.59■■□□□ 1.05
CLN3-263ENST00000637871 KRT85P78386 507 aa21.59■■□□□ 1.05
CLN3-263ENST00000637871 TMED8Q6PL24 325 aaPredicted RBP21.59■■□□□ 1.05
CLN3-263ENST00000637871 LARGE2Q8N3Y3 721 aa21.59■■□□□ 1.05
CLN3-263ENST00000637871 SUPT20HQ8NEM7 779 aa21.59■■□□□ 1.05
CLN3-263ENST00000637871 TCEANC2Q96MN5 208 aa21.59■■□□□ 1.05
CLN3-263ENST00000637871 DBNDD1Q9H9R9 158 aa21.59■■□□□ 1.05
CLN3-263ENST00000637871 RNF181Q9P0P0 153 aa21.59■■□□□ 1.05
CLN3-263ENST00000637871 BRPF3Q9ULD4 1205 aa21.59■■□□□ 1.05
CLN3-263ENST00000637871 ELP1O95163 1332 aa21.59■■□□□ 1.05
CLN3-263ENST00000637871 DCAF8L1A6NGE4 600 aa21.58■■□□□ 1.05
CLN3-263ENST00000637871 IGSF3O75054 1194 aa21.58■■□□□ 1.05
CLN3-263ENST00000637871 PDE6AP16499 860 aa21.58■■□□□ 1.05
CLN3-263ENST00000637871 KIAA2012Q0VF49 1180 aa21.58■■□□□ 1.05
CLN3-263ENST00000637871 TRDNQ13061 729 aa21.58■■□□□ 1.05
CLN3-263ENST00000637871 SCAND2PQ9GZW5 306 aaPredicted RBP21.58■■□□□ 1.05
CLN3-263ENST00000637871 PIH1D3Q9NQM4 214 aaKnown RBP21.58■■□□□ 1.05
CLN3-263ENST00000637871 DICER1Q9UPY3 1922 aaKnown RBP21.58■■□□□ 1.04
CLN3-263ENST00000637871 IDH1O75874 414 aaKnown RBP21.58■■□□□ 1.04
CLN3-263ENST00000637871 LMNB1P20700 586 aa21.58■■□□□ 1.04
CLN3-263ENST00000637871 C9orf131Q5VYM1 1079 aa21.58■■□□□ 1.04
CLN3-263ENST00000637871 RALYLQ86SE5 291 aaKnown RBP21.58■■□□□ 1.04
CLN3-263ENST00000637871 FAM184AQ8NB25 1140 aa21.58■■□□□ 1.04
CLN3-263ENST00000637871 EYA3Q99504 573 aa21.58■■□□□ 1.04
CLN3-263ENST00000637871 ZC3H12CQ9C0D7 883 aaKnown RBP21.58■■□□□ 1.04
CLN3-263ENST00000637871 ATL3Q6DD88 541 aa21.57■■□□□ 1.04
CLN3-263ENST00000637871 NAA16Q6N069 864 aaPredicted RBP21.57■■□□□ 1.04
CLN3-263ENST00000637871 TMEM63CQ9P1W3 806 aa21.57■■□□□ 1.04
CLN3-263ENST00000637871 ZNF532Q9HCE3 1301 aa21.56■■□□□ 1.04
CLN3-263ENST00000637871 CHD4Q14839 1912 aa21.56■■□□□ 1.04
CLN3-263ENST00000637871 TCRBV5S4A2TA0A5A2 114 aa21.56■■□□□ 1.04
CLN3-263ENST00000637871 SLFNL1Q499Z3 407 aa21.56■■□□□ 1.04
CLN3-263ENST00000637871 AIDAQ96BJ3 306 aa21.56■■□□□ 1.04
CLN3-263ENST00000637871 CNPY2Q9Y2B0 182 aa21.56■■□□□ 1.04
CLN3-263ENST00000637871 SCN9AQ15858 1988 aa21.56■■□□□ 1.04
CLN3-263ENST00000637871 PATL2C9JE40 543 aaKnown RBP21.55■■□□□ 1.04
CLN3-263ENST00000637871 FOXP2O15409 715 aa21.55■■□□□ 1.04
CLN3-263ENST00000637871 BCAMP50895 628 aa21.55■■□□□ 1.04
CLN3-263ENST00000637871 STK3Q13188 491 aa21.55■■□□□ 1.04
CLN3-263ENST00000637871 PI16Q6UXB8 463 aa21.55■■□□□ 1.04
CLN3-263ENST00000637871 MB21D2Q8IYB1 491 aaPredicted RBP21.55■■□□□ 1.04
CLN3-263ENST00000637871 FAM84BQ96KN1 310 aaPredicted RBP21.55■■□□□ 1.04
CLN3-263ENST00000637871 IQSEC3Q9UPP2 1182 aaPredicted RBP21.55■■□□□ 1.04
CLN3-263ENST00000637871 SEMA3EO15041 775 aa21.55■■□□□ 1.04
CLN3-263ENST00000637871 NASPP49321 788 aaPredicted RBP21.55■■□□□ 1.04
CLN3-263ENST00000637871 SCRN1Q12765 414 aa21.55■■□□□ 1.04
CLN3-263ENST00000637871 RASGRF1Q13972 1273 aa21.55■■□□□ 1.04
CLN3-263ENST00000637871 CCDC183Q5T5S1 534 aa21.55■■□□□ 1.04
CLN3-263ENST00000637871 STRBPQ96SI9 672 aaKnown RBP21.55■■□□□ 1.04
CLN3-263ENST00000637871 KCNQ5Q9NR82 932 aa21.55■■□□□ 1.04
CLN3-263ENST00000637871 YDJCA8MPS7 323 aa21.54■■□□□ 1.04
CLN3-263ENST00000637871 H3BQV1 296 aa21.54■■□□□ 1.04
CLN3-263ENST00000637871 ECE2O60344 883 aa21.54■■□□□ 1.04
CLN3-263ENST00000637871 PDIA3P30101 505 aaKnown RBP21.54■■□□□ 1.04
CLN3-263ENST00000637871 CCDC173Q0VFZ6 552 aa21.54■■□□□ 1.04
CLN3-263ENST00000637871 COL9A3Q14050 684 aaPredicted RBP21.54■■□□□ 1.04
CLN3-263ENST00000637871 IFFO2Q5TF58 517 aa21.54■■□□□ 1.04
CLN3-263ENST00000637871 TTLL5Q6EMB2 1281 aa21.54■■□□□ 1.04
CLN3-263ENST00000637871 MTA3Q9BTC8 594 aa21.54■■□□□ 1.04
CLN3-263ENST00000637871 CAVIN4Q5BKX8 364 aa21.53■■□□□ 1.04
CLN3-263ENST00000637871 NIM1KQ8IY84 436 aa21.53■■□□□ 1.04
CLN3-263ENST00000637871 NSUN7Q8NE18 718 aaKnown RBP21.53■■□□□ 1.04
CLN3-263ENST00000637871 NACAP1Q9BZK3 213 aa21.53■■□□□ 1.04
CLN3-263ENST00000637871 JAG2Q9Y219 1238 aa21.53■■□□□ 1.04
CLN3-263ENST00000637871 LAMA4Q16363 1823 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms