RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 C1orf115Q9H7X2 142 aa14.38□□□□□ -0.11
CLN3-257ENST00000637110 SERPINA10Q9UK55 444 aa14.38□□□□□ -0.11
CLN3-257ENST00000637110 FZD1Q9UP38 647 aa14.38□□□□□ -0.11
CLN3-257ENST00000637110 AKAP2Q9Y2D5 859 aa14.38□□□□□ -0.11
CLN3-257ENST00000637110 ECM29Q5VYK3 1845 aa14.38□□□□□ -0.11
CLN3-257ENST00000637110 TESPA1A2RU30 521 aaPredicted RBP14.37□□□□□ -0.11
CLN3-257ENST00000637110 WDHD1O75717 1129 aaPredicted RBP14.37□□□□□ -0.11
CLN3-257ENST00000637110 TIMM10P62072 90 aa14.37□□□□□ -0.11
CLN3-257ENST00000637110 MTX1Q13505 466 aa14.37□□□□□ -0.11
CLN3-257ENST00000637110 GORABQ5T7V8 394 aa14.37□□□□□ -0.11
CLN3-257ENST00000637110 TEKT1Q969V4 418 aa14.37□□□□□ -0.11
CLN3-257ENST00000637110 ZNF70Q9UC06 446 aaPredicted RBP14.37□□□□□ -0.11
CLN3-257ENST00000637110 COL6A3P12111 3177 aa14.36□□□□□ -0.11
CLN3-257ENST00000637110 PNMA6EA0A0J9YXQ4 647 aa14.36□□□□□ -0.11
CLN3-257ENST00000637110 MYCP01106 439 aaPredicted RBP14.36□□□□□ -0.11
CLN3-257ENST00000637110 MS4A1P11836 297 aa14.36□□□□□ -0.11
CLN3-257ENST00000637110 RLBP1P12271 317 aa14.36□□□□□ -0.11
CLN3-257ENST00000637110 ADORA1P30542 326 aa14.36□□□□□ -0.11
CLN3-257ENST00000637110 TNFAIP1Q13829 316 aa14.36□□□□□ -0.11
CLN3-257ENST00000637110 KIF22Q14807 665 aa14.36□□□□□ -0.11
CLN3-257ENST00000637110 GRIK5Q16478 980 aa14.36□□□□□ -0.11
CLN3-257ENST00000637110 ANKRD13AQ8IZ07 590 aa14.36□□□□□ -0.11
CLN3-257ENST00000637110 PANK1Q8TE04 598 aa14.36□□□□□ -0.11
CLN3-257ENST00000637110 HTATIP2Q9BUP3 242 aa14.36□□□□□ -0.11
CLN3-257ENST00000637110 ZFYVE28Q9HCC9 887 aa14.36□□□□□ -0.11
CLN3-257ENST00000637110 MAST3O60307 1309 aa14.36□□□□□ -0.11
CLN3-257ENST00000637110 A0A1B0GUL7 405 aa14.35□□□□□ -0.11
CLN3-257ENST00000637110 A0A1W2PPC1 479 aa14.35□□□□□ -0.11
CLN3-257ENST00000637110 TCP10L2B9ZVM9 353 aa14.35□□□□□ -0.11
CLN3-257ENST00000637110 PHKA1P46020 1223 aa14.35□□□□□ -0.11
CLN3-257ENST00000637110 TNNI2P48788 182 aa14.35□□□□□ -0.11
CLN3-257ENST00000637110 ATP8B2P98198 1209 aa14.35□□□□□ -0.11
CLN3-257ENST00000637110 RASA3Q14644 834 aa14.35□□□□□ -0.11
CLN3-257ENST00000637110 TAF1CQ15572 869 aaPredicted RBP14.35□□□□□ -0.11
CLN3-257ENST00000637110 CCDC102BQ68D86 513 aa14.35□□□□□ -0.11
CLN3-257ENST00000637110 NKX2-3Q8TAU0 364 aa14.35□□□□□ -0.11
CLN3-257ENST00000637110 PTPN18Q99952 460 aa14.35□□□□□ -0.11
CLN3-257ENST00000637110 TMOD2Q9NZR1 351 aa14.35□□□□□ -0.11
CLN3-257ENST00000637110 DENND2AQ9ULE3 1009 aa14.35□□□□□ -0.11
CLN3-257ENST00000637110 NR2E3Q9Y5X4 410 aa14.35□□□□□ -0.11
CLN3-257ENST00000637110 AOX1Q06278 1338 aa14.35□□□□□ -0.11
CLN3-257ENST00000637110 SSC5DA1L4H1 1573 aa14.34□□□□□ -0.11
CLN3-257ENST00000637110 ZBTB7BO15156 539 aaPredicted RBP14.34□□□□□ -0.11
CLN3-257ENST00000637110 SURF6O75683 361 aaKnown RBP14.34□□□□□ -0.11
CLN3-257ENST00000637110 GNRH1P01148 92 aa14.34□□□□□ -0.11
CLN3-257ENST00000637110 HDLBPQ00341 1268 aaKnown RBP14.34□□□□□ -0.11
CLN3-257ENST00000637110 CAP1Q01518 475 aa14.34□□□□□ -0.11
CLN3-257ENST00000637110 SPDYE2Q495Y8 402 aa14.34□□□□□ -0.11
CLN3-257ENST00000637110 SH3TC2Q8TF17 1288 aa14.34□□□□□ -0.11
CLN3-257ENST00000637110 XAGE2Q96GT9 111 aa14.34□□□□□ -0.11
CLN3-257ENST00000637110 RCAN3Q9UKA8 241 aa14.34□□□□□ -0.11
CLN3-257ENST00000637110 SUGT1Q9Y2Z0 365 aa14.34□□□□□ -0.11
CLN3-257ENST00000637110 SEMA3EO15041 775 aa14.33□□□□□ -0.12
CLN3-257ENST00000637110 LDHBP07195 334 aaKnown RBP14.33□□□□□ -0.12
CLN3-257ENST00000637110 GJA5P36382 358 aa14.33□□□□□ -0.12
CLN3-257ENST00000637110 PRMT2P55345 433 aa14.33□□□□□ -0.12
CLN3-257ENST00000637110 MVPQ14764 893 aaKnown RBP14.33□□□□□ -0.12
CLN3-257ENST00000637110 NBPF12Q5TAG4 269 aaPredicted RBP14.33□□□□□ -0.12
CLN3-257ENST00000637110 MYH13Q9UKX3 1938 aa14.33□□□□□ -0.12
CLN3-257ENST00000637110 CACNB3P54284 484 aa14.32□□□□□ -0.12
CLN3-257ENST00000637110 OPTNQ96CV9 577 aa14.32□□□□□ -0.12
CLN3-257ENST00000637110 PRO3102Q9H379 93 aa14.32□□□□□ -0.12
CLN3-257ENST00000637110 ABCF2Q9UG63 623 aa14.32□□□□□ -0.12
CLN3-257ENST00000637110 ARAP2Q8WZ64 1704 aa14.32□□□□□ -0.12
CLN3-257ENST00000637110 OTOFQ9HC10 1997 aa14.31□□□□□ -0.12
CLN3-257ENST00000637110 USP2O75604 605 aaPredicted RBP14.31□□□□□ -0.12
CLN3-257ENST00000637110 GTF2A2P52657 109 aa14.31□□□□□ -0.12
CLN3-257ENST00000637110 POLA2Q14181 598 aa14.31□□□□□ -0.12
CLN3-257ENST00000637110 HHIPL2Q6UWX4 724 aa14.31□□□□□ -0.12
CLN3-257ENST00000637110 ZGPATQ8N5A5 531 aaKnown RBP14.31□□□□□ -0.12
CLN3-257ENST00000637110 ZDHHC15Q96MV8 337 aa14.31□□□□□ -0.12
CLN3-257ENST00000637110 MRIQ9BWK5 157 aa14.31□□□□□ -0.12
CLN3-257ENST00000637110 ELP3Q9H9T3 547 aa14.31□□□□□ -0.12
CLN3-257ENST00000637110 COG6Q9Y2V7 657 aa14.31□□□□□ -0.12
CLN3-257ENST00000637110 CCL15-CCL14A0A0B4J2E2 113 aa14.3□□□□□ -0.12
CLN3-257ENST00000637110 PRDX5P30044 214 aa14.3□□□□□ -0.12
CLN3-257ENST00000637110 LACTBP83111 547 aaPredicted RBP14.3□□□□□ -0.12
CLN3-257ENST00000637110 RASGRF1Q13972 1273 aa14.3□□□□□ -0.12
CLN3-257ENST00000637110 DIXDC1Q155Q3 683 aa14.3□□□□□ -0.12
CLN3-257ENST00000637110 CCL15Q16663 113 aa14.3□□□□□ -0.12
CLN3-257ENST00000637110 SPTY2D1Q68D10 685 aaPredicted RBP14.3□□□□□ -0.12
CLN3-257ENST00000637110 DZIP1Q86YF9 867 aaKnown RBP14.3□□□□□ -0.12
CLN3-257ENST00000637110 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.3□□□□□ -0.12
CLN3-257ENST00000637110 SSH3Q8TE77 659 aa14.3□□□□□ -0.12
CLN3-257ENST00000637110 MS4A4AQ96JQ5 239 aa14.3□□□□□ -0.12
CLN3-257ENST00000637110 TMEM39BQ9GZU3 492 aa14.3□□□□□ -0.12
CLN3-257ENST00000637110 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.3□□□□□ -0.12
CLN3-257ENST00000637110 TTC39AQ5SRH9 613 aa14.29□□□□□ -0.12
CLN3-257ENST00000637110 APOBEC3HQ6NTF7 200 aaKnown RBP14.29□□□□□ -0.12
CLN3-257ENST00000637110 BRI3BPQ8WY22 251 aa14.29□□□□□ -0.12
CLN3-257ENST00000637110 SHISA4Q96DD7 197 aa14.29□□□□□ -0.12
CLN3-257ENST00000637110 BCL11AQ9H165 835 aa14.29□□□□□ -0.12
CLN3-257ENST00000637110 DDX19BQ9UMR2 479 aa14.29□□□□□ -0.12
CLN3-257ENST00000637110 TLR2O60603 784 aa14.28□□□□□ -0.12
CLN3-257ENST00000637110 UQCRFS1P1P0C7P4 283 aa14.28□□□□□ -0.12
CLN3-257ENST00000637110 GJA8P48165 433 aa14.28□□□□□ -0.12
CLN3-257ENST00000637110 TNNI3KQ59H18 835 aa14.28□□□□□ -0.12
CLN3-257ENST00000637110 CCDC158Q5M9N0 1113 aa14.28□□□□□ -0.12
CLN3-257ENST00000637110 CEP85Q6P2H3 762 aa14.28□□□□□ -0.12
CLN3-257ENST00000637110 ERICH6Q7L0X2 663 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms