RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 ST13P4Q8IZP2 240 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-213ENST00000613099 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.54□□□□□ -1.522e-6■■■■■ 55.4
VPS13D-213ENST00000613099 NPC1L1Q9UHC9 1359 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.54□□□□□ -1.52
VPS13D-213ENST00000613099 BHMTQ93088 406 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 STAMBPL1Q96FJ0 436 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 AATFQ9NY61 560 aaKnown RBP eCLIP5.54□□□□□ -1.52
VPS13D-213ENST00000613099 AKR1B15C9JRZ8 316 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-213ENST00000613099 ZNF189O75820 626 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-213ENST00000613099 SUN1O94901 812 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 DEUP1Q05D60 604 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 TEKT1Q969V4 418 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 ATP6V0A4Q9HBG4 840 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 PAPOLBQ9NRJ5 636 aaKnown RBP5.54□□□□□ -1.52
VPS13D-213ENST00000613099 DKK3Q9UBP4 350 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 PYCARDQ9ULZ3 195 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 CEP131Q9UPN4 1083 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 TMEM232C9JQI7 657 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 MAP3K7O43318 606 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 MAN1A2O60476 641 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 RUFY3Q7L099 469 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 MCUR1Q96AQ8 359 aa5.54□□□□□ -1.52
VPS13D-213ENST00000613099 A0A1W2PRG0 241 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 CAND2O75155 1236 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 PPP2R1AP30153 589 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 TNNC1P63316 161 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 TMTC1Q8IUR5 882 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 CBX8Q9HC52 389 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 ZNF711Q9Y462 761 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 ERBINQ96RT1 1412 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 TSKSQ9UJT2 592 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 USP16Q9Y5T5 823 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 F13A1P00488 732 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 GFAPP14136 432 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 PSEN1P49768 467 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 KIF5AQ12840 1032 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 IKQ13123 557 aaPredicted RBP5.53□□□□□ -1.52
VPS13D-213ENST00000613099 SMYD5Q6GMV2 418 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 CETN2P41208 172 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 LARP6Q9BRS8 491 aaKnown RBP5.53□□□□□ -1.52
VPS13D-213ENST00000613099 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.53□□□□□ -1.52
VPS13D-213ENST00000613099 SEC24BO95487 1268 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 SCP2P22307 547 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 FAM160A1Q05DH4 1040 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 LRRIQ3A6PVS8 624 aaPredicted RBP5.53□□□□□ -1.52
VPS13D-213ENST00000613099 NOP14P78316 857 aaKnown RBP5.53□□□□□ -1.52
VPS13D-213ENST00000613099 TRIM42Q8IWZ5 723 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 MORC4Q8TE76 937 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 MARCH6O60337 910 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 KRT75O95678 551 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 GSTA2P09210 222 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 KRT4P19013 534 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 CUL4BQ13620 913 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 E2F5Q15329 346 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 TAF7Q15545 349 aaPredicted RBP5.53□□□□□ -1.52
VPS13D-213ENST00000613099 SPATA21Q7Z572 469 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 ANKRD24Q8TF21 1146 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 ZNF608Q9ULD9 1512 aaPredicted RBP5.53□□□□□ -1.52
VPS13D-213ENST00000613099 CCT4P50991 539 aaKnown RBP5.53□□□□□ -1.52
VPS13D-213ENST00000613099 MRPS25P82663 173 aaKnown RBP5.53□□□□□ -1.52
VPS13D-213ENST00000613099 CFAP157Q5JU67 520 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 CCDC26Q8TAB7 109 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 CATSPER2Q96P56 530 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 CXorf38Q8TB03 319 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 HELLSQ9NRZ9 838 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 GON4LQ3T8J9 2241 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 N4BP3O15049 544 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 TAOK1Q7L7X3 1001 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 WASF1Q92558 559 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 TMEM63CQ9P1W3 806 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 BCAP29Q9UHQ4 241 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 VSIG1Q86XK7 387 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 ZBTB10Q96DT7 871 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 IWS1Q96ST2 819 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 IQSEC3Q9UPP2 1182 aaPredicted RBP5.53□□□□□ -1.52
VPS13D-213ENST00000613099 IKBKGQ9Y6K9 419 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 UHRF1BP1LA0JNW5 1464 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 DIAPH1O60610 1272 aaKnown RBP5.53□□□□□ -1.52
VPS13D-213ENST00000613099 HDGFL2Q7Z4V5 671 aaPredicted RBP5.53□□□□□ -1.52
VPS13D-213ENST00000613099 LZTFL1Q9NQ48 299 aa5.53□□□□□ -1.52
VPS13D-213ENST00000613099 G3BP2Q9UN86 482 aaKnown RBP5.53□□□□□ -1.52
VPS13D-213ENST00000613099 ASXL1Q8IXJ9 1541 aa5.52□□□□□ -1.53
VPS13D-213ENST00000613099 PLA2R1Q13018 1463 aa5.52□□□□□ -1.53
VPS13D-213ENST00000613099 CHGBP05060 677 aa5.52□□□□□ -1.53
VPS13D-213ENST00000613099 PAX7P23759 505 aa5.52□□□□□ -1.53
VPS13D-213ENST00000613099 CYLC2Q14093 348 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-213ENST00000613099 ZNF692Q9BU19 519 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-213ENST00000613099 MYO1AQ9UBC5 1043 aa5.52□□□□□ -1.53
VPS13D-213ENST00000613099 SBNO2Q9Y2G9 1366 aa5.52□□□□□ -1.53
VPS13D-213ENST00000613099 ESRRBO95718 433 aa5.52□□□□□ -1.53
VPS13D-213ENST00000613099 GYS2P54840 703 aa5.52□□□□□ -1.53
VPS13D-213ENST00000613099 FYB2Q5VWT5 728 aa5.52□□□□□ -1.53
VPS13D-213ENST00000613099 CYP26C1Q6V0L0 522 aa5.52□□□□□ -1.53
VPS13D-213ENST00000613099 NEK1Q96PY6 1258 aa5.52□□□□□ -1.53
VPS13D-213ENST00000613099 POLKQ9UBT6 870 aa5.52□□□□□ -1.53
VPS13D-213ENST00000613099 CACNA1FO60840 1977 aa5.52□□□□□ -1.53
VPS13D-213ENST00000613099 HARSP12081 509 aaKnown RBP5.52□□□□□ -1.53
VPS13D-213ENST00000613099 MYO1EQ12965 1108 aa5.52□□□□□ -1.53
VPS13D-213ENST00000613099 Q4G0T1 1027 aa5.52□□□□□ -1.53
VPS13D-213ENST00000613099 RALYLQ86SE5 291 aaKnown RBP5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms