RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 BTDP43251 543 aa23.44■■□□□ 1.34
UPF1-209ENST00000600310 SLC9C2Q5TAH2 1124 aa23.44■■□□□ 1.34
UPF1-209ENST00000600310 CDC42EP5Q6NZY7 148 aa23.44■■□□□ 1.34
UPF1-209ENST00000600310 USP48Q86UV5 1035 aa23.44■■□□□ 1.34
UPF1-209ENST00000600310 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.44■■□□□ 1.348e-7■■■□□ 15.5
UPF1-209ENST00000600310 MAP4K4O95819 1239 aaPredicted RBP23.43■■□□□ 1.34
UPF1-209ENST00000600310 ADGRA1Q86SQ6 560 aa23.43■■□□□ 1.34
UPF1-209ENST00000600310 VEZTQ9HBM0 779 aa23.43■■□□□ 1.34
UPF1-209ENST00000600310 USP40Q9NVE5 1235 aa23.43■■□□□ 1.34
UPF1-209ENST00000600310 TMOD2Q9NZR1 351 aa23.43■■□□□ 1.34
UPF1-209ENST00000600310 PASKQ96RG2 1323 aa23.42■■□□□ 1.34
UPF1-209ENST00000600310 ADM5C9JUS6 153 aa23.42■■□□□ 1.34
UPF1-209ENST00000600310 ADD2P35612 726 aa23.42■■□□□ 1.34
UPF1-209ENST00000600310 PPP4CP60510 307 aa23.42■■□□□ 1.34
UPF1-209ENST00000600310 FKBP1CQ5VVH2 108 aa23.42■■□□□ 1.34
UPF1-209ENST00000600310 ZSCAN25Q6NSZ9 544 aa23.42■■□□□ 1.34
UPF1-209ENST00000600310 DOCK2Q92608 1830 aa23.42■■□□□ 1.34
UPF1-209ENST00000600310 MYH2Q9UKX2 1941 aa23.41■■□□□ 1.34
UPF1-209ENST00000600310 TCRBV5S4A2TA0A5A2 114 aa23.41■■□□□ 1.34
UPF1-209ENST00000600310 TRAF5O00463 557 aa23.41■■□□□ 1.34
UPF1-209ENST00000600310 BAG3O95817 575 aa23.41■■□□□ 1.34
UPF1-209ENST00000600310 RHBDL3P58872 404 aa23.41■■□□□ 1.34
UPF1-209ENST00000600310 TNFAIP1Q13829 316 aa23.41■■□□□ 1.34
UPF1-209ENST00000600310 UBE3CQ15386 1083 aa23.41■■□□□ 1.34
UPF1-209ENST00000600310 IFFO2Q5TF58 517 aa23.41■■□□□ 1.34
UPF1-209ENST00000600310 EVI5LQ96CN4 794 aa23.41■■□□□ 1.34
UPF1-209ENST00000600310 NOL10Q9BSC4 688 aaKnown RBP23.41■■□□□ 1.34
UPF1-209ENST00000600310 SCAF8Q9UPN6 1271 aaKnown RBP23.41■■□□□ 1.34
UPF1-209ENST00000600310 MAST2Q6P0Q8 1798 aa23.41■■□□□ 1.34
UPF1-209ENST00000600310 ZNF532Q9HCE3 1301 aa23.4■■□□□ 1.34
UPF1-209ENST00000600310 CACNB3P54284 484 aa23.4■■□□□ 1.34
UPF1-209ENST00000600310 DEFB129Q9H1M3 183 aa23.4■■□□□ 1.34
UPF1-209ENST00000600310 AATFQ9NY61 560 aaKnown RBP eCLIP23.4■■□□□ 1.34
UPF1-209ENST00000600310 PPP2R3BQ9Y5P8 575 aa23.4■■□□□ 1.34
UPF1-209ENST00000600310 MYO5AQ9Y4I1 1855 aaKnown RBP23.4■■□□□ 1.34
UPF1-209ENST00000600310 TCP10L2B9ZVM9 353 aa23.39■■□□□ 1.33
UPF1-209ENST00000600310 PLCG2P16885 1265 aa23.39■■□□□ 1.33
UPF1-209ENST00000600310 LRRFIP1Q32MZ4 808 aaKnown RBP23.39■■□□□ 1.33
UPF1-209ENST00000600310 CERS3Q8IU89 383 aa23.39■■□□□ 1.33
UPF1-209ENST00000600310 ZFYP08048 801 aaPredicted RBP23.38■■□□□ 1.33
UPF1-209ENST00000600310 TNNI2P48788 182 aa23.38■■□□□ 1.33
UPF1-209ENST00000600310 FMR1Q06787 632 aaKnown RBP eCLIP23.38■■□□□ 1.332e-6■■■■□ 20.1
UPF1-209ENST00000600310 RASA3Q14644 834 aa23.38■■□□□ 1.33
UPF1-209ENST00000600310 DLK2Q6UY11 383 aa23.38■■□□□ 1.33
UPF1-209ENST00000600310 FAM83AQ86UY5 434 aa23.38■■□□□ 1.33
UPF1-209ENST00000600310 DNAJC5GQ8N7S2 189 aa23.38■■□□□ 1.33
UPF1-209ENST00000600310 FSD1Q9BTV5 496 aa23.38■■□□□ 1.33
UPF1-209ENST00000600310 IDI2Q9BXS1 227 aa23.38■■□□□ 1.33
UPF1-209ENST00000600310 WDHD1O75717 1129 aaPredicted RBP23.37■■□□□ 1.33
UPF1-209ENST00000600310 CHGBP05060 677 aa23.37■■□□□ 1.33
UPF1-209ENST00000600310 NFIAQ12857 509 aa23.37■■□□□ 1.33
UPF1-209ENST00000600310 SLFNL1Q499Z3 407 aa23.37■■□□□ 1.33
UPF1-209ENST00000600310 MIGA1Q8NAN2 632 aa23.37■■□□□ 1.33
UPF1-209ENST00000600310 CDCA5Q96FF9 252 aa23.37■■□□□ 1.33
UPF1-209ENST00000600310 ECM29Q5VYK3 1845 aa23.37■■□□□ 1.33
UPF1-209ENST00000600310 TRIM6-TRIM34B2RNG4 842 aa23.36■■□□□ 1.33
UPF1-209ENST00000600310 RNF113AO15541 343 aaKnown RBP23.36■■□□□ 1.33
UPF1-209ENST00000600310 NPM3O75607 178 aaKnown RBP23.36■■□□□ 1.33
UPF1-209ENST00000600310 DYNLL1P63167 89 aaKnown RBP23.36■■□□□ 1.33
UPF1-209ENST00000600310 TTC22Q5TAA0 569 aa23.36■■□□□ 1.33
UPF1-209ENST00000600310 TICAM2Q86XR7 235 aa23.36■■□□□ 1.33
UPF1-209ENST00000600310 SH3RF3Q8TEJ3 882 aaPredicted RBP23.36■■□□□ 1.33
UPF1-209ENST00000600310 RIOK1Q9BRS2 568 aaKnown RBP23.36■■□□□ 1.33
UPF1-209ENST00000600310 FAM198AQ9UFP1 575 aa23.36■■□□□ 1.33
UPF1-209ENST00000600310 CNTNAP1P78357 1384 aa23.36■■□□□ 1.33
UPF1-209ENST00000600310 RFX7Q2KHR2 1363 aa23.36■■□□□ 1.33
UPF1-209ENST00000600310 POLR2AP24928 1970 aaKnown RBP23.36■■□□□ 1.33
UPF1-209ENST00000600310 MAGEB6P1A0A0J9YX57 407 aa23.35■■□□□ 1.33
UPF1-209ENST00000600310 PRAMEF18Q5VWM3 479 aa23.35■■□□□ 1.33
UPF1-209ENST00000600310 TEX11Q8IYF3 940 aa23.35■■□□□ 1.33
UPF1-209ENST00000600310 APPBP2Q92624 585 aa23.35■■□□□ 1.33
UPF1-209ENST00000600310 ENTPD3O75355 529 aa23.34■■□□□ 1.33
UPF1-209ENST00000600310 GSPT1P15170 499 aaKnown RBP23.34■■□□□ 1.33
UPF1-209ENST00000600310 RGS3P49796 1198 aa23.34■■□□□ 1.33
UPF1-209ENST00000600310 FAM151AQ8WW52 585 aa23.34■■□□□ 1.33
UPF1-209ENST00000600310 RILPL2Q969X0 211 aa23.34■■□□□ 1.33
UPF1-209ENST00000600310 CELF2O95319 508 aaKnown RBP23.33■■□□□ 1.33
UPF1-209ENST00000600310 TCP10Q12799 353 aa23.33■■□□□ 1.33
UPF1-209ENST00000600310 CST9Q5W186 159 aa23.33■■□□□ 1.33
UPF1-209ENST00000600310 SKAP1Q86WV1 359 aa23.33■■□□□ 1.33
UPF1-209ENST00000600310 TEPSINQ96N21 525 aa23.33■■□□□ 1.33
UPF1-209ENST00000600310 TMEM39BQ9GZU3 492 aa23.33■■□□□ 1.33
UPF1-209ENST00000600310 DDX4Q9NQI0 724 aaKnown RBP23.33■■□□□ 1.33
UPF1-209ENST00000600310 OSBP2Q969R2 916 aa23.32■■□□□ 1.32
UPF1-209ENST00000600310 PUS7LQ9H0K6 701 aaKnown RBP23.32■■□□□ 1.32
UPF1-209ENST00000600310 RPAP1Q9BWH6 1393 aaPredicted RBP23.31■■□□□ 1.32
UPF1-209ENST00000600310 PICALMQ13492 652 aa23.31■■□□□ 1.32
UPF1-209ENST00000600310 SUPT20HL1Q3ZLR7 823 aa23.31■■□□□ 1.32
UPF1-209ENST00000600310 ZMYM1Q5SVZ6 1142 aa23.31■■□□□ 1.32
UPF1-209ENST00000600310 NBPF12Q5TAG4 269 aaPredicted RBP23.31■■□□□ 1.32
UPF1-209ENST00000600310 ZFPM1Q8IX07 1006 aa23.31■■□□□ 1.32
UPF1-209ENST00000600310 LCORLQ8N3X6 602 aa23.31■■□□□ 1.32
UPF1-209ENST00000600310 ZNF408Q9H9D4 720 aa23.31■■□□□ 1.32
UPF1-209ENST00000600310 TMEM88BA6NKF7 163 aa23.3■■□□□ 1.32
UPF1-209ENST00000600310 MBD4O95243 580 aa23.3■■□□□ 1.32
UPF1-209ENST00000600310 SDSP20132 328 aa23.3■■□□□ 1.32
UPF1-209ENST00000600310 NF2P35240 595 aa23.3■■□□□ 1.32
UPF1-209ENST00000600310 CDAN1Q8IWY9 1227 aa23.3■■□□□ 1.32
UPF1-209ENST00000600310 TGFBRAP1Q8WUH2 860 aa23.3■■□□□ 1.32
UPF1-209ENST00000600310 ARMT1Q9H993 441 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 129.4 ms