RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	SLX4	Q8IY92	1834 aa		18.18	■□□□□ 0.5
DDX39A-209	ENST00000589318	APP	P05067	770 aa		18.17	■□□□□ 0.5
DDX39A-209	ENST00000589318	IL1R1	P14778	569 aa		18.17	■□□□□ 0.5
DDX39A-209	ENST00000589318	NUCB2	P80303	420 aa		18.17	■□□□□ 0.5
DDX39A-209	ENST00000589318	NAA16	Q6N069	864 aa	Predicted RBP	18.17	■□□□□ 0.5
DDX39A-209	ENST00000589318	LRRC2	Q9BYS8	371 aa		18.17	■□□□□ 0.5
DDX39A-209	ENST00000589318	RBM10	P98175	930 aa	Known RBP	18.17	■□□□□ 0.5
DDX39A-209	ENST00000589318	TBC1D10C	Q8IV04	446 aa		18.17	■□□□□ 0.5
DDX39A-209	ENST00000589318	CCDC83	Q8IWF9	413 aa		18.17	■□□□□ 0.5
DDX39A-209	ENST00000589318	MB21D2	Q8IYB1	491 aa	Predicted RBP	18.17	■□□□□ 0.5
DDX39A-209	ENST00000589318	SLC4A4	Q9Y6R1	1079 aa		18.17	■□□□□ 0.5
DDX39A-209	ENST00000589318	MAGEB6P1	A0A0J9YX57	407 aa		18.16	■□□□□ 0.5
DDX39A-209	ENST00000589318	GAS2L3	Q86XJ1	694 aa		18.16	■□□□□ 0.5
DDX39A-209	ENST00000589318	C2CD5	Q86YS7	1000 aa		18.16	■□□□□ 0.5
DDX39A-209	ENST00000589318	NECAB1	Q8N987	351 aa		18.16	■□□□□ 0.5
DDX39A-209	ENST00000589318	WDR66	Q8TBY9	1149 aa		18.16	■□□□□ 0.5
DDX39A-209	ENST00000589318	BAZ2A	Q9UIF9	1905 aa	Known RBP	18.16	■□□□□ 0.5
DDX39A-209	ENST00000589318	DYNLL1	P63167	89 aa	Known RBP	18.15	■□□□□ 0.5
DDX39A-209	ENST00000589318	GRIK5	Q16478	980 aa		18.15	■□□□□ 0.5
DDX39A-209	ENST00000589318	FBXL16	Q8N461	479 aa		18.15	■□□□□ 0.5
DDX39A-209	ENST00000589318	NKX2-3	Q8TAU0	364 aa		18.15	■□□□□ 0.5
DDX39A-209	ENST00000589318	C6orf229	H3BNL8	230 aa		18.15	■□□□□ 0.5
DDX39A-209	ENST00000589318	STYK1	Q6J9G0	422 aa		18.15	■□□□□ 0.5
DDX39A-209	ENST00000589318	TMED8	Q6PL24	325 aa	Predicted RBP	18.15	■□□□□ 0.5
DDX39A-209	ENST00000589318	BRF1	Q92994	677 aa		18.15	■□□□□ 0.5
DDX39A-209	ENST00000589318	NAPB	Q9H115	298 aa		18.15	■□□□□ 0.5
DDX39A-209	ENST00000589318	NOL7	Q9UMY1	257 aa	Known RBP	18.15	■□□□□ 0.5
DDX39A-209	ENST00000589318	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	18.15	■□□□□ 0.5
DDX39A-209	ENST00000589318	TACC3	Q9Y6A5	838 aa		18.15	■□□□□ 0.5
DDX39A-209	ENST00000589318	DLEC1	Q9Y238	1755 aa		18.15	■□□□□ 0.5
DDX39A-209	ENST00000589318	ANTXR2	P58335	489 aa		18.14	■□□□□ 0.49
DDX39A-209	ENST00000589318	CHST3	Q7LGC8	479 aa		18.14	■□□□□ 0.49
DDX39A-209	ENST00000589318	MYH2	Q9UKX2	1941 aa		18.14	■□□□□ 0.49
DDX39A-209	ENST00000589318		H0YIN7	160 aa		18.13	■□□□□ 0.49
DDX39A-209	ENST00000589318	IGSF3	O75054	1194 aa		18.13	■□□□□ 0.49
DDX39A-209	ENST00000589318	KLHL40	Q2TBA0	621 aa		18.13	■□□□□ 0.49
DDX39A-209	ENST00000589318	SPTY2D1	Q68D10	685 aa	Predicted RBP	18.13	■□□□□ 0.49
DDX39A-209	ENST00000589318	NCOA7	Q8NI08	942 aa		18.13	■□□□□ 0.49
DDX39A-209	ENST00000589318	SDR42E1	Q8WUS8	393 aa		18.13	■□□□□ 0.49
DDX39A-209	ENST00000589318	ZNF622	Q969S3	477 aa	Known RBP eCLIP	18.13	■□□□□ 0.49	1e-9	■□□□□ 10.8
DDX39A-209	ENST00000589318	C10orf71	Q711Q0	1435 aa		18.13	■□□□□ 0.49
DDX39A-209	ENST00000589318	BRD1	O95696	1058 aa		18.13	■□□□□ 0.49
DDX39A-209	ENST00000589318	CHRNA5	P30532	468 aa		18.13	■□□□□ 0.49
DDX39A-209	ENST00000589318	MPND	Q8N594	471 aa		18.13	■□□□□ 0.49
DDX39A-209	ENST00000589318	DTNB	O60941	627 aa		18.12	■□□□□ 0.49
DDX39A-209	ENST00000589318	NACAP1	Q9BZK3	213 aa		18.12	■□□□□ 0.49
DDX39A-209	ENST00000589318	NEDD4	P46934	1319 aa		18.12	■□□□□ 0.49
DDX39A-209	ENST00000589318	WDR19	Q8NEZ3	1342 aa		18.12	■□□□□ 0.49
DDX39A-209	ENST00000589318	SNED1	Q8TER0	1413 aa		18.12	■□□□□ 0.49
DDX39A-209	ENST00000589318	LDHB	P07195	334 aa	Known RBP	18.11	■□□□□ 0.49
DDX39A-209	ENST00000589318	TDO2	P48775	406 aa		18.11	■□□□□ 0.49
DDX39A-209	ENST00000589318	ZNF445	P59923	1031 aa		18.11	■□□□□ 0.49
DDX39A-209	ENST00000589318	CTDSPL2	Q05D32	466 aa		18.11	■□□□□ 0.49
DDX39A-209	ENST00000589318	GTF3C6	Q969F1	213 aa		18.11	■□□□□ 0.49
DDX39A-209	ENST00000589318	GPHN	Q9NQX3	736 aa	Predicted RBP	18.11	■□□□□ 0.49
DDX39A-209	ENST00000589318	SMC3	Q9UQE7	1217 aa		18.11	■□□□□ 0.49
DDX39A-209	ENST00000589318	PRC1	O43663	620 aa		18.11	■□□□□ 0.49
DDX39A-209	ENST00000589318	EVC	P57679	992 aa		18.11	■□□□□ 0.49
DDX39A-209	ENST00000589318	APOBR	Q0VD83	1088 aa		18.11	■□□□□ 0.49
DDX39A-209	ENST00000589318	DPP8	Q6V1X1	898 aa	Predicted RBP	18.11	■□□□□ 0.49
DDX39A-209	ENST00000589318	DZIP1	Q86YF9	867 aa	Known RBP	18.11	■□□□□ 0.49
DDX39A-209	ENST00000589318	CCDC125	Q86Z20	511 aa		18.11	■□□□□ 0.49
DDX39A-209	ENST00000589318	INCENP	Q9NQS7	918 aa		18.11	■□□□□ 0.49
DDX39A-209	ENST00000589318	AATF	Q9NY61	560 aa	Known RBP eCLIP	18.11	■□□□□ 0.49
DDX39A-209	ENST00000589318	FAM205A	Q6ZU69	1335 aa		18.11	■□□□□ 0.49
DDX39A-209	ENST00000589318	KIF13B	Q9NQT8	1826 aa		18.11	■□□□□ 0.49
DDX39A-209	ENST00000589318	LAMB1	P07942	1786 aa		18.1	■□□□□ 0.49
DDX39A-209	ENST00000589318	GJB2	P29033	226 aa		18.1	■□□□□ 0.49
DDX39A-209	ENST00000589318	STK3	Q13188	491 aa		18.1	■□□□□ 0.49
DDX39A-209	ENST00000589318	CYB5R4	Q7L1T6	521 aa		18.1	■□□□□ 0.49
DDX39A-209	ENST00000589318	RALYL	Q86SE5	291 aa	Known RBP	18.1	■□□□□ 0.49
DDX39A-209	ENST00000589318	SLC16A10	Q8TF71	515 aa		18.1	■□□□□ 0.49
DDX39A-209	ENST00000589318	C7orf43	Q8WVR3	580 aa		18.1	■□□□□ 0.49
DDX39A-209	ENST00000589318	COA1	Q9GZY4	146 aa		18.1	■□□□□ 0.49
DDX39A-209	ENST00000589318	CDK5RAP2	Q96SN8	1893 aa		18.1	■□□□□ 0.49
DDX39A-209	ENST00000589318	RIMBP2	O15034	1052 aa		18.1	■□□□□ 0.49
DDX39A-209	ENST00000589318	PFKFB2	O60825	505 aa		18.1	■□□□□ 0.49
DDX39A-209	ENST00000589318	FGD1	P98174	961 aa		18.1	■□□□□ 0.49
DDX39A-209	ENST00000589318	FAM13B	Q9NYF5	915 aa		18.1	■□□□□ 0.49
DDX39A-209	ENST00000589318	ANAPC4	Q9UJX5	808 aa		18.1	■□□□□ 0.49
DDX39A-209	ENST00000589318		B4E1Z4	1266 aa		18.09	■□□□□ 0.49
DDX39A-209	ENST00000589318	SMIM22	K7EJ46	135 aa		18.09	■□□□□ 0.49
DDX39A-209	ENST00000589318	BAG4	O95429	457 aa	Known RBP	18.09	■□□□□ 0.49
DDX39A-209	ENST00000589318	SCRN1	Q12765	414 aa		18.09	■□□□□ 0.49
DDX39A-209	ENST00000589318	AKNAD1	Q5T1N1	836 aa		18.09	■□□□□ 0.49
DDX39A-209	ENST00000589318	GIMAP6	Q6P9H5	292 aa		18.09	■□□□□ 0.49
DDX39A-209	ENST00000589318	STAG1	Q8WVM7	1258 aa		18.09	■□□□□ 0.49
DDX39A-209	ENST00000589318	ZNF646	O15015	1829 aa	Predicted RBP	18.08	■□□□□ 0.49
DDX39A-209	ENST00000589318	UQCRHL	A0A096LP55	91 aa		18.08	■□□□□ 0.49
DDX39A-209	ENST00000589318	UQCRH	P07919	91 aa		18.08	■□□□□ 0.49
DDX39A-209	ENST00000589318	PPARA	Q07869	468 aa		18.08	■□□□□ 0.49
DDX39A-209	ENST00000589318	TRDN	Q13061	729 aa		18.08	■□□□□ 0.49
DDX39A-209	ENST00000589318	DIXDC1	Q155Q3	683 aa		18.08	■□□□□ 0.49
DDX39A-209	ENST00000589318	CNKSR1	Q969H4	720 aa		18.08	■□□□□ 0.49
DDX39A-209	ENST00000589318	PDLIM2	Q96JY6	352 aa		18.08	■□□□□ 0.49
DDX39A-209	ENST00000589318	SYT1	P21579	422 aa		18.08	■□□□□ 0.48
DDX39A-209	ENST00000589318	PDIA3	P30101	505 aa	Known RBP	18.08	■□□□□ 0.48
DDX39A-209	ENST00000589318	SASS6	Q6UVJ0	657 aa		18.08	■□□□□ 0.48
DDX39A-209	ENST00000589318	ZNF274	Q96GC6	653 aa	Predicted RBP	18.08	■□□□□ 0.48
DDX39A-209	ENST00000589318	ZC3H12C	Q9C0D7	883 aa	Known RBP	18.08	■□□□□ 0.48

Retrieved 100 of 20,778 RNA–protein pairs in 68 ms