RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 DRD2P14416 443 aa10.96□□□□□ -0.65
SS18-214ENST00000580003 ZNF16P17020 682 aaPredicted RBP10.96□□□□□ -0.65
SS18-214ENST00000580003 LIG1P18858 919 aa10.96□□□□□ -0.65
SS18-214ENST00000580003 LRRC14Q15048 493 aa10.96□□□□□ -0.65
SS18-214ENST00000580003 TAF1CQ15572 869 aaPredicted RBP10.96□□□□□ -0.65
SS18-214ENST00000580003 MEI1Q5TIA1 1274 aa10.96□□□□□ -0.65
SS18-214ENST00000580003 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.96□□□□□ -0.65
SS18-214ENST00000580003 ARMC10Q8N2F6 343 aa10.96□□□□□ -0.65
SS18-214ENST00000580003 MYRFLQ96LU7 910 aa10.96□□□□□ -0.65
SS18-214ENST00000580003 SEMA6BQ9H3T3 888 aa10.96□□□□□ -0.65
SS18-214ENST00000580003 HIF3AQ9Y2N7 669 aa10.96□□□□□ -0.65
SS18-214ENST00000580003 DYRK3O43781 588 aa10.95□□□□□ -0.66
SS18-214ENST00000580003 SLFN14P0C7P3 912 aa10.95□□□□□ -0.66
SS18-214ENST00000580003 ADH5P11766 374 aa10.95□□□□□ -0.66
SS18-214ENST00000580003 USP11P51784 963 aa10.95□□□□□ -0.66
SS18-214ENST00000580003 MAP1SQ66K74 1059 aaPredicted RBP10.95□□□□□ -0.66
SS18-214ENST00000580003 PRR23CQ6ZRP0 262 aa10.95□□□□□ -0.66
SS18-214ENST00000580003 WDR18Q9BV38 432 aa10.95□□□□□ -0.66
SS18-214ENST00000580003 AP4E1Q9UPM8 1137 aa10.95□□□□□ -0.66
SS18-214ENST00000580003 RAXQ9Y2V3 346 aa10.95□□□□□ -0.66
SS18-214ENST00000580003 CTSHP09668 335 aa10.94□□□□□ -0.66
SS18-214ENST00000580003 BMP3P12645 472 aa10.94□□□□□ -0.66
SS18-214ENST00000580003 BMP6P22004 513 aa10.94□□□□□ -0.66
SS18-214ENST00000580003 ST13P50502 369 aaKnown RBP10.94□□□□□ -0.66
SS18-214ENST00000580003 PCNX4Q63HM2 1172 aa10.94□□□□□ -0.66
SS18-214ENST00000580003 KCNF1Q9H3M0 494 aa10.94□□□□□ -0.66
SS18-214ENST00000580003 SYNGAP1Q96PV0 1343 aa10.93□□□□□ -0.66
SS18-214ENST00000580003 LLGL2Q6P1M3 1020 aa10.93□□□□□ -0.66
SS18-214ENST00000580003 DYMQ7RTS9 669 aa10.93□□□□□ -0.66
SS18-214ENST00000580003 FAM20CQ8IXL6 584 aa10.93□□□□□ -0.66
SS18-214ENST00000580003 ACSBG1Q96GR2 724 aa10.93□□□□□ -0.66
SS18-214ENST00000580003 STOML1Q9UBI4 398 aa10.93□□□□□ -0.66
SS18-214ENST00000580003 CYP8B1Q9UNU6 501 aa10.93□□□□□ -0.66
SS18-214ENST00000580003 USP31Q70CQ4 1352 aa10.92□□□□□ -0.66
SS18-214ENST00000580003 ZNF862O60290 1169 aa10.92□□□□□ -0.66
SS18-214ENST00000580003 LMNB1P20700 586 aa10.92□□□□□ -0.66
SS18-214ENST00000580003 RXRBP28702 533 aa10.92□□□□□ -0.66
SS18-214ENST00000580003 ZNF252P-AS1Q0IIN9 211 aa10.92□□□□□ -0.66
SS18-214ENST00000580003 KIF4BQ2VIQ3 1234 aa10.92□□□□□ -0.66
SS18-214ENST00000580003 C2CD4AQ8NCU7 369 aaPredicted RBP10.92□□□□□ -0.66
SS18-214ENST00000580003 GRIN3AQ8TCU5 1115 aa10.92□□□□□ -0.66
SS18-214ENST00000580003 YIPF2Q9BWQ6 316 aa10.92□□□□□ -0.66
SS18-214ENST00000580003 RBM47A0AV96 593 aaKnown RBP10.91□□□□□ -0.66
SS18-214ENST00000580003 TTBK2Q6IQ55 1244 aa10.91□□□□□ -0.66
SS18-214ENST00000580003 WDR89Q96FK6 387 aaPredicted RBP10.91□□□□□ -0.66
SS18-214ENST00000580003 TRIM37O94972 964 aa10.9□□□□□ -0.66
SS18-214ENST00000580003 RLBP1P12271 317 aa10.9□□□□□ -0.66
SS18-214ENST00000580003 MAP3K11Q16584 847 aa10.9□□□□□ -0.66
SS18-214ENST00000580003 SGO2Q562F6 1265 aa10.9□□□□□ -0.66
SS18-214ENST00000580003 CLEC10AQ8IUN9 316 aa10.9□□□□□ -0.66
SS18-214ENST00000580003 GPBAR1Q8TDU6 330 aa10.9□□□□□ -0.66
SS18-214ENST00000580003 NOC4LQ9BVI4 516 aaKnown RBP10.9□□□□□ -0.66
SS18-214ENST00000580003 ACTL7BQ9Y614 415 aa10.9□□□□□ -0.66
SS18-214ENST00000580003 ADAM23O75077 832 aa10.89□□□□□ -0.67
SS18-214ENST00000580003 MAP4P27816 1152 aaKnown RBP10.89□□□□□ -0.67
SS18-214ENST00000580003 ASPAP45381 313 aa10.89□□□□□ -0.67
SS18-214ENST00000580003 ID3Q02535 119 aa10.89□□□□□ -0.67
SS18-214ENST00000580003 SCARA3Q6AZY7 606 aa10.89□□□□□ -0.67
SS18-214ENST00000580003 BEND4Q6ZU67 534 aa10.89□□□□□ -0.67
SS18-214ENST00000580003 PPP1R9AQ9ULJ8 1098 aa10.89□□□□□ -0.67
SS18-214ENST00000580003 MRPL58Q14197 206 aaKnown RBP10.88□□□□□ -0.67
SS18-214ENST00000580003 ATXN3LQ9H3M9 355 aa10.88□□□□□ -0.67
SS18-214ENST00000580003 TMPRSS2O15393 492 aa10.87□□□□□ -0.67
SS18-214ENST00000580003 LIG3P49916 1009 aa10.87□□□□□ -0.67
SS18-214ENST00000580003 RPS26P62854 115 aaKnown RBP10.87□□□□□ -0.67
SS18-214ENST00000580003 RASIP1Q5U651 963 aa10.87□□□□□ -0.67
SS18-214ENST00000580003 CDPF1Q6NVV7 123 aa10.87□□□□□ -0.67
SS18-214ENST00000580003 RGS22Q8NE09 1264 aa10.87□□□□□ -0.67
SS18-214ENST00000580003 FBLIM1Q8WUP2 373 aa10.87□□□□□ -0.67
SS18-214ENST00000580003 FAM83CQ9BQN1 747 aa10.87□□□□□ -0.67
SS18-214ENST00000580003 C7orf69Q9H7B7 122 aa10.87□□□□□ -0.67
SS18-214ENST00000580003 CRIM1Q9NZV1 1036 aa10.87□□□□□ -0.67
SS18-214ENST00000580003 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.86□□□□□ -0.67
SS18-214ENST00000580003 RAB6AP20340 208 aa10.86□□□□□ -0.67
SS18-214ENST00000580003 PRSS36Q5K4E3 855 aa10.86□□□□□ -0.67
SS18-214ENST00000580003 MPRIPQ6WCQ1 1025 aa10.86□□□□□ -0.67
SS18-214ENST00000580003 TRIM42Q8IWZ5 723 aa10.86□□□□□ -0.67
SS18-214ENST00000580003 PIDD1Q9HB75 910 aa10.86□□□□□ -0.67
SS18-214ENST00000580003 FAM105AQ9NUU6 356 aa10.86□□□□□ -0.67
SS18-214ENST00000580003 CACNA2D2Q9NY47 1150 aa10.86□□□□□ -0.67
SS18-214ENST00000580003 FAM95CA0A1B0GW59 222 aa10.85□□□□□ -0.67
SS18-214ENST00000580003 HMX2A2RU54 273 aa10.85□□□□□ -0.67
SS18-214ENST00000580003 GSC2O15499 205 aa10.85□□□□□ -0.67
SS18-214ENST00000580003 FSTP19883 344 aa10.85□□□□□ -0.67
SS18-214ENST00000580003 NFKBIBQ15653 356 aa10.85□□□□□ -0.67
SS18-214ENST00000580003 PAOXQ6QHF9 649 aa10.85□□□□□ -0.67
SS18-214ENST00000580003 GSX1Q9H4S2 264 aaPredicted RBP10.85□□□□□ -0.67
SS18-214ENST00000580003 PCDHA4Q9UN74 947 aa10.85□□□□□ -0.67
SS18-214ENST00000580003 PCDHGC5Q9Y5F6 944 aa10.85□□□□□ -0.67
SS18-214ENST00000580003 AGMOQ6ZNB7 445 aa10.84□□□□□ -0.67
SS18-214ENST00000580003 SLC51AQ86UW1 340 aa10.84□□□□□ -0.67
SS18-214ENST00000580003 FANCD2OSQ96PS1 177 aa10.84□□□□□ -0.67
SS18-214ENST00000580003 MAP7Q14244 749 aa10.83□□□□□ -0.68
SS18-214ENST00000580003 ZC3H12AQ5D1E8 599 aaKnown RBP10.83□□□□□ -0.68
SS18-214ENST00000580003 RELL1Q8IUW5 271 aa10.83□□□□□ -0.68
SS18-214ENST00000580003 PODXL2Q9NZ53 605 aa10.83□□□□□ -0.68
SS18-214ENST00000580003 NFICP08651 508 aa10.82□□□□□ -0.68
SS18-214ENST00000580003 PWP1Q13610 501 aa10.82□□□□□ -0.68
SS18-214ENST00000580003 DIEXFQ68CQ4 756 aaKnown RBP10.82□□□□□ -0.68
SS18-214ENST00000580003 RNF43Q68DV7 783 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms