RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-213	ENST00000573166	TCP10L2	B9ZVM9	353 aa		11.76	□□□□□ -0.53
SMG6-213	ENST00000573166	GNAQ	P50148	359 aa		11.76	□□□□□ -0.53
SMG6-213	ENST00000573166	GPSM2	P81274	684 aa		11.76	□□□□□ -0.53
SMG6-213	ENST00000573166	ILDR1	Q86SU0	546 aa	Predicted RBP	11.76	□□□□□ -0.53
SMG6-213	ENST00000573166	CD209	Q9NNX6	404 aa		11.76	□□□□□ -0.53
SMG6-213	ENST00000573166	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.76	□□□□□ -0.53
SMG6-213	ENST00000573166	BECN2	A8MW95	431 aa		11.76	□□□□□ -0.53
SMG6-213	ENST00000573166	APOBR	Q0VD83	1088 aa		11.76	□□□□□ -0.53
SMG6-213	ENST00000573166	DIXDC1	Q155Q3	683 aa		11.76	□□□□□ -0.53
SMG6-213	ENST00000573166	AOC3	Q16853	763 aa		11.76	□□□□□ -0.53
SMG6-213	ENST00000573166	ARID3A	Q99856	593 aa		11.76	□□□□□ -0.53
SMG6-213	ENST00000573166	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.76	□□□□□ -0.53
SMG6-213	ENST00000573166	PES1	O00541	588 aa	Known RBP	11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	MCAM	P43121	646 aa		11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	CUL5	Q93034	780 aa		11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	DSCC1	Q9BVC3	393 aa		11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	MTFR1L	Q9H019	292 aa		11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	CLRN2	A0PK11	232 aa		11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	AK2	P54819	239 aa		11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	PODN	Q7Z5L7	613 aa		11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	RXRA	P19793	462 aa		11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	GJB2	P29033	226 aa		11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	RUFY3	Q7L099	469 aa		11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	IFNL3	Q8IZI9	196 aa		11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	HOOK2	Q96ED9	719 aa		11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	CFAP45	Q9UL16	551 aa		11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	CCDC194	A0A1B0GVG4	234 aa		11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	HSPD1	P10809	573 aa	Known RBP	11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	CCDC12	Q8WUD4	166 aa	Predicted RBP	11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	PICK1	Q9NRD5	415 aa		11.75	□□□□□ -0.53
SMG6-213	ENST00000573166	KIN	O60870	393 aa	Known RBP	11.74	□□□□□ -0.53
SMG6-213	ENST00000573166	ATG9A	Q7Z3C6	839 aa		11.74	□□□□□ -0.53
SMG6-213	ENST00000573166	ANKRD26	Q9UPS8	1709 aa		11.74	□□□□□ -0.53
SMG6-213	ENST00000573166	GRIPAP1	Q4V328	841 aa		11.74	□□□□□ -0.53
SMG6-213	ENST00000573166	ARPP21	Q9UBL0	812 aa	Predicted RBP	11.74	□□□□□ -0.53
SMG6-213	ENST00000573166	ATP6V0A2	Q9Y487	856 aa		11.74	□□□□□ -0.53
SMG6-213	ENST00000573166	FGA	P02671	866 aa		11.74	□□□□□ -0.53
SMG6-213	ENST00000573166	DPEP1	P16444	411 aa		11.74	□□□□□ -0.53
SMG6-213	ENST00000573166	PTH1R	Q03431	593 aa		11.74	□□□□□ -0.53
SMG6-213	ENST00000573166	ZMYM1	Q5SVZ6	1142 aa		11.74	□□□□□ -0.53
SMG6-213	ENST00000573166	SULF1	Q8IWU6	871 aa		11.74	□□□□□ -0.53
SMG6-213	ENST00000573166	SPATA32	Q96LK8	384 aa		11.74	□□□□□ -0.53
SMG6-213	ENST00000573166	PIH1D3	Q9NQM4	214 aa	Known RBP	11.74	□□□□□ -0.53
SMG6-213	ENST00000573166	SNX14	Q9Y5W7	946 aa		11.74	□□□□□ -0.53
SMG6-213	ENST00000573166	CALM1	P0DP23	149 aa		11.73	□□□□□ -0.53
SMG6-213	ENST00000573166	CALM2	P0DP24	149 aa		11.73	□□□□□ -0.53
SMG6-213	ENST00000573166	CALM3	P0DP25	149 aa		11.73	□□□□□ -0.53
SMG6-213	ENST00000573166	PRDX5	P30044	214 aa		11.73	□□□□□ -0.53
SMG6-213	ENST00000573166	ADD2	P35612	726 aa		11.73	□□□□□ -0.53
SMG6-213	ENST00000573166	DYNLL1	P63167	89 aa	Known RBP	11.73	□□□□□ -0.53
SMG6-213	ENST00000573166	AKNAD1	Q5T1N1	836 aa		11.73	□□□□□ -0.53
SMG6-213	ENST00000573166	GOLGA6L19	H0YKK7	550 aa		11.73	□□□□□ -0.53
SMG6-213	ENST00000573166	PPARA	Q07869	468 aa		11.73	□□□□□ -0.53
SMG6-213	ENST00000573166	ZYX	Q15942	572 aa	Known RBP	11.73	□□□□□ -0.53
SMG6-213	ENST00000573166	ZNF526	Q8TF50	670 aa	Predicted RBP	11.73	□□□□□ -0.53
SMG6-213	ENST00000573166	FAM84B	Q96KN1	310 aa	Predicted RBP	11.73	□□□□□ -0.53
SMG6-213	ENST00000573166	LTN1	O94822	1766 aa		11.73	□□□□□ -0.53
SMG6-213	ENST00000573166	ECE2	O60344	883 aa		11.73	□□□□□ -0.53
SMG6-213	ENST00000573166	TFAP4	Q01664	338 aa		11.73	□□□□□ -0.53
SMG6-213	ENST00000573166	PI4K2B	Q8TCG2	481 aa		11.73	□□□□□ -0.53
SMG6-213	ENST00000573166	SETD1A	O15047	1707 aa	Known RBP	11.73	□□□□□ -0.53
SMG6-213	ENST00000573166	RTL9	Q8NET4	1388 aa		11.72	□□□□□ -0.53
SMG6-213	ENST00000573166	MECOM	Q03112	1051 aa		11.72	□□□□□ -0.53
SMG6-213	ENST00000573166	TBC1D16	Q8TBP0	767 aa		11.72	□□□□□ -0.53
SMG6-213	ENST00000573166	DCPS	Q96C86	337 aa	Known RBP	11.72	□□□□□ -0.53
SMG6-213	ENST00000573166	SH2D4A	Q9H788	454 aa		11.72	□□□□□ -0.53
SMG6-213	ENST00000573166	BCL9L	Q86UU0	1499 aa		11.72	□□□□□ -0.53
SMG6-213	ENST00000573166	ZNF827	Q17R98	1081 aa		11.72	□□□□□ -0.53
SMG6-213	ENST00000573166	SASS6	Q6UVJ0	657 aa		11.72	□□□□□ -0.53
SMG6-213	ENST00000573166	TMEM87B	Q96K49	555 aa		11.72	□□□□□ -0.53
SMG6-213	ENST00000573166	COL14A1	Q05707	1796 aa	Known RBP	11.72	□□□□□ -0.53
SMG6-213	ENST00000573166	UTY	O14607	1347 aa		11.72	□□□□□ -0.53
SMG6-213	ENST00000573166	SLIT2	O94813	1529 aa		11.72	□□□□□ -0.53
SMG6-213	ENST00000573166	ALG1	Q9BT22	464 aa		11.72	□□□□□ -0.53
SMG6-213	ENST00000573166	ATP8A2	Q9NTI2	1148 aa		11.72	□□□□□ -0.53
SMG6-213	ENST00000573166	RNF181	Q9P0P0	153 aa		11.72	□□□□□ -0.53
SMG6-213	ENST00000573166	ANGEL1	Q9UNK9	670 aa	Known RBP	11.72	□□□□□ -0.53
SMG6-213	ENST00000573166	PXDNL	A1KZ92	1463 aa		11.72	□□□□□ -0.53
SMG6-213	ENST00000573166	USP17L8	P0C7I0	530 aa		11.71	□□□□□ -0.53
SMG6-213	ENST00000573166	RPS6KB1	P23443	525 aa		11.71	□□□□□ -0.53
SMG6-213	ENST00000573166	FAM47A	Q5JRC9	791 aa		11.71	□□□□□ -0.53
SMG6-213	ENST00000573166	HEATR3	Q7Z4Q2	680 aa		11.71	□□□□□ -0.53
SMG6-213	ENST00000573166	OSBP2	Q969R2	916 aa		11.71	□□□□□ -0.53
SMG6-213	ENST00000573166	ARHGEF10L	Q9HCE6	1279 aa		11.71	□□□□□ -0.53
SMG6-213	ENST00000573166		E7EWF7	191 aa		11.71	□□□□□ -0.53
SMG6-213	ENST00000573166	MBD3	O95983	291 aa		11.71	□□□□□ -0.53
SMG6-213	ENST00000573166	CYP2E1	P05181	493 aa	Predicted RBP	11.71	□□□□□ -0.53
SMG6-213	ENST00000573166	HSPA4	P34932	840 aa		11.71	□□□□□ -0.53
SMG6-213	ENST00000573166	SLC10A5	Q5PT55	438 aa		11.71	□□□□□ -0.53
SMG6-213	ENST00000573166	STX6	O43752	255 aa		11.71	□□□□□ -0.54
SMG6-213	ENST00000573166	KRT18	P05783	430 aa	Known RBP	11.71	□□□□□ -0.54
SMG6-213	ENST00000573166	TRAF1	Q13077	416 aa		11.71	□□□□□ -0.54
SMG6-213	ENST00000573166	USP48	Q86UV5	1035 aa		11.71	□□□□□ -0.54
SMG6-213	ENST00000573166	PUS7L	Q9H0K6	701 aa	Known RBP	11.71	□□□□□ -0.54
SMG6-213	ENST00000573166	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	11.71	□□□□□ -0.54
SMG6-213	ENST00000573166	KAZALD1	Q96I82	304 aa		11.71	□□□□□ -0.54
SMG6-213	ENST00000573166	PLS1	Q14651	629 aa		11.7	□□□□□ -0.54
SMG6-213	ENST00000573166	STYK1	Q6J9G0	422 aa		11.7	□□□□□ -0.54
SMG6-213	ENST00000573166	ZNF589	Q86UQ0	364 aa	Predicted RBP	11.7	□□□□□ -0.54
SMG6-213	ENST00000573166	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	11.7	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms