RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 DOCK3Q8IZD9 2030 aa9.18□□□□□ -0.94
CHD3-213ENST00000571249 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.18□□□□□ -0.94
CHD3-213ENST00000571249 FAM89AQ96GI7 184 aa9.18□□□□□ -0.94
CHD3-213ENST00000571249 TEPSINQ96N21 525 aa9.18□□□□□ -0.94
CHD3-213ENST00000571249 SPINK5Q9NQ38 1064 aaPredicted RBP9.18□□□□□ -0.94
CHD3-213ENST00000571249 RYDENQ9NUL5 291 aaKnown RBP9.18□□□□□ -0.94
CHD3-213ENST00000571249 SNCAIPQ9Y6H5 919 aa9.18□□□□□ -0.94
CHD3-213ENST00000571249 TPRP12270 2363 aaKnown RBP9.17□□□□□ -0.94
CHD3-213ENST00000571249 MYO3BQ8WXR4 1341 aa9.17□□□□□ -0.94
CHD3-213ENST00000571249 U2SURPO15042 1029 aaKnown RBP9.17□□□□□ -0.94
CHD3-213ENST00000571249 LRP10Q7Z4F1 713 aa9.17□□□□□ -0.94
CHD3-213ENST00000571249 ANKS1AQ92625 1134 aa9.17□□□□□ -0.94
CHD3-213ENST00000571249 ZKSCAN4Q969J2 545 aaPredicted RBP9.17□□□□□ -0.94
CHD3-213ENST00000571249 UIMC1Q96RL1 719 aa9.17□□□□□ -0.94
CHD3-213ENST00000571249 PRDM12Q9H4Q4 367 aa9.17□□□□□ -0.94
CHD3-213ENST00000571249 HMX1Q9NP08 348 aaPredicted RBP9.17□□□□□ -0.94
CHD3-213ENST00000571249 CSADQ9Y600 493 aa9.17□□□□□ -0.94
CHD3-213ENST00000571249 CHD6Q8TD26 2715 aa9.17□□□□□ -0.94
CHD3-213ENST00000571249 DCHS1Q96JQ0 3298 aa9.16□□□□□ -0.94
CHD3-213ENST00000571249 KMT2BQ9UMN6 2715 aaPredicted RBP9.16□□□□□ -0.94
CHD3-213ENST00000571249 F8W031 263 aaPredicted RBP9.16□□□□□ -0.94
CHD3-213ENST00000571249 TNPO2O14787 897 aaKnown RBP9.16□□□□□ -0.94
CHD3-213ENST00000571249 DNAJB2P25686 324 aa9.16□□□□□ -0.94
CHD3-213ENST00000571249 MOGSQ13724 837 aa9.16□□□□□ -0.94
CHD3-213ENST00000571249 PROSER3Q2NL68 480 aa9.16□□□□□ -0.94
CHD3-213ENST00000571249 CFAP100Q494V2 611 aa9.16□□□□□ -0.94
CHD3-213ENST00000571249 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.16□□□□□ -0.94
CHD3-213ENST00000571249 ANKRD23Q86SG2 305 aa9.16□□□□□ -0.94
CHD3-213ENST00000571249 ERO1BQ86YB8 467 aa9.16□□□□□ -0.94
CHD3-213ENST00000571249 RTF1Q92541 710 aaKnown RBP9.16□□□□□ -0.94
CHD3-213ENST00000571249 BADQ92934 168 aa9.16□□□□□ -0.94
CHD3-213ENST00000571249 GAS2L1Q99501 681 aaPredicted RBP9.16□□□□□ -0.94
CHD3-213ENST00000571249 CXXC1Q9P0U4 656 aaPredicted RBP9.16□□□□□ -0.94
CHD3-213ENST00000571249 MGAMO43451 1857 aa9.16□□□□□ -0.94
CHD3-213ENST00000571249 SPDYE2BA6NHP3 402 aa9.15□□□□□ -0.94
CHD3-213ENST00000571249 PI4K2BG5E9Z4 385 aa9.15□□□□□ -0.94
CHD3-213ENST00000571249 RIOK3O14730 519 aaKnown RBP9.15□□□□□ -0.94
CHD3-213ENST00000571249 ST18O60284 1047 aa9.15□□□□□ -0.94
CHD3-213ENST00000571249 SPDYE6P0CI01 402 aa9.15□□□□□ -0.94
CHD3-213ENST00000571249 IGFBP4P22692 258 aa9.15□□□□□ -0.94
CHD3-213ENST00000571249 ATN1P54259 1190 aaPredicted RBP9.15□□□□□ -0.94
CHD3-213ENST00000571249 GTF2IP78347 998 aa9.15□□□□□ -0.94
CHD3-213ENST00000571249 PDIA6Q15084 440 aa9.15□□□□□ -0.94
CHD3-213ENST00000571249 CERS5Q8N5B7 392 aa9.15□□□□□ -0.94
CHD3-213ENST00000571249 RNF25Q96BH1 459 aaPredicted RBP9.15□□□□□ -0.94
CHD3-213ENST00000571249 TMEM39BQ9GZU3 492 aa9.15□□□□□ -0.94
CHD3-213ENST00000571249 CD320Q9NPF0 282 aa9.15□□□□□ -0.94
CHD3-213ENST00000571249 XDHP47989 1333 aa9.14□□□□□ -0.95
CHD3-213ENST00000571249 PRR33A8MZF0 331 aa9.14□□□□□ -0.95
CHD3-213ENST00000571249 HMGCRP04035 888 aa9.14□□□□□ -0.95
CHD3-213ENST00000571249 ATP2B4P23634 1241 aa9.14□□□□□ -0.95
CHD3-213ENST00000571249 EPHB4P54760 987 aa9.14□□□□□ -0.95
CHD3-213ENST00000571249 AIMP1Q12904 312 aaKnown RBP9.14□□□□□ -0.95
CHD3-213ENST00000571249 PPIL2Q13356 520 aa9.14□□□□□ -0.95
CHD3-213ENST00000571249 TAF7Q15545 349 aaPredicted RBP9.14□□□□□ -0.95
CHD3-213ENST00000571249 HSP90AB3PQ58FF7 597 aa9.14□□□□□ -0.95
CHD3-213ENST00000571249 RIC3Q7Z5B4 369 aa9.14□□□□□ -0.95
CHD3-213ENST00000571249 COL26A1Q96A83 441 aa9.14□□□□□ -0.95
CHD3-213ENST00000571249 CCDC85AQ96PX6 553 aaPredicted RBP9.14□□□□□ -0.95
CHD3-213ENST00000571249 RIF1Q5UIP0 2472 aaKnown RBP9.14□□□□□ -0.95
CHD3-213ENST00000571249 MYO15AQ9UKN7 3530 aa9.14□□□□□ -0.95
CHD3-213ENST00000571249 ANKRD11Q6UB99 2663 aaPredicted RBP9.13□□□□□ -0.95
CHD3-213ENST00000571249 MYO1BO43795 1136 aa9.13□□□□□ -0.95
CHD3-213ENST00000571249 KLRK1P26718 216 aa9.13□□□□□ -0.95
CHD3-213ENST00000571249 PRKAR2BP31323 418 aa9.13□□□□□ -0.95
CHD3-213ENST00000571249 MMP14P50281 582 aa9.13□□□□□ -0.95
CHD3-213ENST00000571249 GPAT2Q6NUI2 795 aa9.13□□□□□ -0.95
CHD3-213ENST00000571249 TIFAQ96CG3 184 aa9.13□□□□□ -0.95
CHD3-213ENST00000571249 RNPC3Q96LT9 517 aaKnown RBP9.13□□□□□ -0.95
CHD3-213ENST00000571249 SENP6Q9GZR1 1112 aaPredicted RBP9.13□□□□□ -0.95
CHD3-213ENST00000571249 PRKAG2Q9UGJ0 569 aa9.13□□□□□ -0.95
CHD3-213ENST00000571249 KNSTRNQ9Y448 316 aa9.13□□□□□ -0.95
CHD3-213ENST00000571249 NCOR2Q9Y618 2525 aa9.13□□□□□ -0.95
CHD3-213ENST00000571249 CHD7Q9P2D1 2997 aa9.13□□□□□ -0.95
CHD3-213ENST00000571249 TCP10L2B9ZVM9 353 aa9.12□□□□□ -0.95
CHD3-213ENST00000571249 STK25O00506 426 aa9.12□□□□□ -0.95
CHD3-213ENST00000571249 PBX2P40425 430 aa9.12□□□□□ -0.95
CHD3-213ENST00000571249 EIF4A1P60842 406 aaKnown RBP9.12□□□□□ -0.95
CHD3-213ENST00000571249 SPDYE2Q495Y8 402 aa9.12□□□□□ -0.95
CHD3-213ENST00000571249 LHX8Q68G74 356 aa9.12□□□□□ -0.95
CHD3-213ENST00000571249 COPS6Q7L5N1 327 aa9.12□□□□□ -0.95
CHD3-213ENST00000571249 WRNIP1Q96S55 665 aa9.12□□□□□ -0.95
CHD3-213ENST00000571249 PARK7Q99497 189 aaKnown RBP9.12□□□□□ -0.95
CHD3-213ENST00000571249 COA1Q9GZY4 146 aa9.12□□□□□ -0.95
CHD3-213ENST00000571249 WDR70Q9NW82 654 aa9.12□□□□□ -0.95
CHD3-213ENST00000571249 ZNF70Q9UC06 446 aaPredicted RBP9.12□□□□□ -0.95
CHD3-213ENST00000571249 DMDP11532 3685 aa9.12□□□□□ -0.95
CHD3-213ENST00000571249 LTBP2Q14767 1821 aa9.12□□□□□ -0.95
CHD3-213ENST00000571249 CFAP47Q6ZTR5 3102 aa9.11□□□□□ -0.95
CHD3-213ENST00000571249 ATP5J2-PTCD1G3V325 749 aa9.11□□□□□ -0.95
CHD3-213ENST00000571249 IRS4O14654 1257 aaPredicted RBP9.11□□□□□ -0.95
CHD3-213ENST00000571249 TLL1O43897 1013 aa9.11□□□□□ -0.95
CHD3-213ENST00000571249 RBM5P52756 815 aaKnown RBP eCLIP9.11□□□□□ -0.95
CHD3-213ENST00000571249 SH3RF1Q7Z6J0 888 aa9.11□□□□□ -0.95
CHD3-213ENST00000571249 MICALL1Q8N3F8 863 aa9.11□□□□□ -0.95
CHD3-213ENST00000571249 COA7Q96BR5 231 aa9.11□□□□□ -0.95
CHD3-213ENST00000571249 TDRD3Q9H7E2 651 aaKnown RBP9.11□□□□□ -0.95
CHD3-213ENST00000571249 PRDM5Q9NQX1 630 aaPredicted RBP9.11□□□□□ -0.95
CHD3-213ENST00000571249 GJD2Q9UKL4 321 aa9.11□□□□□ -0.95
CHD3-213ENST00000571249 SSUH2Q9Y2M2 353 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms