RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 NFKBIBQ15653 356 aa4.49□□□□□ -1.69
VPS35-208ENST00000568612 BEND4Q6ZU67 534 aa4.49□□□□□ -1.69
VPS35-208ENST00000568612 SULF2Q8IWU5 870 aa4.49□□□□□ -1.69
VPS35-208ENST00000568612 TRIM42Q8IWZ5 723 aa4.49□□□□□ -1.69
VPS35-208ENST00000568612 DUSP9Q99956 384 aaKnown RBP4.49□□□□□ -1.69
VPS35-208ENST00000568612 YIPF2Q9BWQ6 316 aa4.49□□□□□ -1.69
VPS35-208ENST00000568612 SRCIN1Q9C0H9 1055 aa4.49□□□□□ -1.69
VPS35-208ENST00000568612 NRSN2Q9GZP1 204 aa4.49□□□□□ -1.69
VPS35-208ENST00000568612 C7orf69Q9H7B7 122 aa4.49□□□□□ -1.69
VPS35-208ENST00000568612 SUGCTQ9HAC7 445 aa4.49□□□□□ -1.69
VPS35-208ENST00000568612 TTF2Q9UNY4 1162 aaKnown RBP4.49□□□□□ -1.69
VPS35-208ENST00000568612 AOC2O75106 756 aa4.48□□□□□ -1.69
VPS35-208ENST00000568612 TIAF1O95411 115 aa4.48□□□□□ -1.69
VPS35-208ENST00000568612 IGLV1-40P01703 118 aa4.48□□□□□ -1.69
VPS35-208ENST00000568612 GSTP1P09211 210 aaKnown RBP4.48□□□□□ -1.69
VPS35-208ENST00000568612 GNA15P30679 374 aa4.48□□□□□ -1.69
VPS35-208ENST00000568612 XPCQ01831 940 aaPredicted RBP4.48□□□□□ -1.69
VPS35-208ENST00000568612 MAP1SQ66K74 1059 aaPredicted RBP4.48□□□□□ -1.69
VPS35-208ENST00000568612 CLEC10AQ8IUN9 316 aa4.48□□□□□ -1.69
VPS35-208ENST00000568612 C3orf58Q8NDZ4 430 aa4.48□□□□□ -1.69
VPS35-208ENST00000568612 FBLIM1Q8WUP2 373 aa4.48□□□□□ -1.69
VPS35-208ENST00000568612 ACSBG1Q96GR2 724 aa4.48□□□□□ -1.69
VPS35-208ENST00000568612 CEP44Q9C0F1 390 aa4.48□□□□□ -1.69
VPS35-208ENST00000568612 CCDC86Q9H6F5 360 aaKnown RBP4.48□□□□□ -1.69
VPS35-208ENST00000568612 RNF19AQ9NV58 838 aa4.48□□□□□ -1.69
VPS35-208ENST00000568612 FAM8A1Q9UBU6 413 aa4.48□□□□□ -1.69
VPS35-208ENST00000568612 HIF3AQ9Y2N7 669 aa4.48□□□□□ -1.69
VPS35-208ENST00000568612 FAM95CA0A1B0GW59 222 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 GSC2O15499 205 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 SLFN14P0C7P3 912 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 ASPAP45381 313 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 NFIAQ12857 509 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 PSMD2Q13200 908 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 CDPF1Q6NVV7 123 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 PAOXQ6QHF9 649 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 NPAS4Q8IUM7 802 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 DHX37Q8IY37 1157 aaKnown RBP4.47□□□□□ -1.69
VPS35-208ENST00000568612 FBXL6Q8N531 539 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 C2CD4AQ8NCU7 369 aaPredicted RBP4.47□□□□□ -1.69
VPS35-208ENST00000568612 WDR89Q96FK6 387 aaPredicted RBP4.47□□□□□ -1.69
VPS35-208ENST00000568612 MFSD14AQ96MC6 490 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 FRMD6Q96NE9 622 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 FAM83CQ9BQN1 747 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 WDR18Q9BV38 432 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 EMILIN2Q9BXX0 1053 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 LGR6Q9HBX8 967 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 CDK11AQ9UQ88 783 aaPredicted RBP4.47□□□□□ -1.69
VPS35-208ENST00000568612 SAMM50Q9Y512 469 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 SUPT16HQ9Y5B9 1047 aaKnown RBP4.47□□□□□ -1.69
VPS35-208ENST00000568612 ACTL7BQ9Y614 415 aa4.47□□□□□ -1.69
VPS35-208ENST00000568612 NME2P22392 152 aa4.46□□□□□ -1.7
VPS35-208ENST00000568612 ARNTP27540 789 aa4.46□□□□□ -1.7
VPS35-208ENST00000568612 TRIM26Q12899 539 aaPredicted RBP4.46□□□□□ -1.7
VPS35-208ENST00000568612 COL19A1Q14993 1142 aa4.46□□□□□ -1.7
VPS35-208ENST00000568612 RNF43Q68DV7 783 aa4.46□□□□□ -1.7
VPS35-208ENST00000568612 DNAJC14Q6Y2X3 702 aaPredicted RBP4.46□□□□□ -1.7
VPS35-208ENST00000568612 STK35Q8TDR2 534 aa4.46□□□□□ -1.7
VPS35-208ENST00000568612 FAM161BQ96MY7 647 aa4.46□□□□□ -1.7
VPS35-208ENST00000568612 NECAB3Q96P71 396 aaPredicted RBP4.46□□□□□ -1.7
VPS35-208ENST00000568612 PIDD1Q9HB75 910 aa4.46□□□□□ -1.7
VPS35-208ENST00000568612 MRS2Q9HD23 443 aa4.46□□□□□ -1.7
VPS35-208ENST00000568612 FAM105AQ9NUU6 356 aa4.46□□□□□ -1.7
VPS35-208ENST00000568612 PARP2Q9UGN5 583 aa4.46□□□□□ -1.7
VPS35-208ENST00000568612 PPM1HQ9ULR3 514 aa4.46□□□□□ -1.7
VPS35-208ENST00000568612 DAGLAQ9Y4D2 1042 aa4.46□□□□□ -1.7
VPS35-208ENST00000568612 FANCIQ9NVI1 1328 aa4.46□□□□□ -1.7
VPS35-208ENST00000568612 WDR64B1ANS9 1081 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 ENC1O14682 589 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 TMPRSS2O15393 492 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 ZNF862O60290 1169 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 RNGTTO60942 597 aaKnown RBP4.45□□□□□ -1.7
VPS35-208ENST00000568612 PAGE1O75459 146 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 NFICP08651 508 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 CELA3AP09093 270 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 HSP90B1P14625 803 aaKnown RBP4.45□□□□□ -1.7
VPS35-208ENST00000568612 LMNB1P20700 586 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 ID3Q02535 119 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 CCDC85BQ15834 202 aaPredicted RBP4.45□□□□□ -1.7
VPS35-208ENST00000568612 TMCO4Q5TGY1 634 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 GIMAP7Q8NHV1 300 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 SHKBP1Q8TBC3 707 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 GRIN3AQ8TCU5 1115 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 TBC1D32Q96NH3 1257 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 NAP1L5Q96NT1 182 aaPredicted RBP4.45□□□□□ -1.7
VPS35-208ENST00000568612 DBNDD2Q9BQY9 259 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 PICK1Q9NRD5 415 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 PPP1R9AQ9ULJ8 1098 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 AK5Q9Y6K8 562 aa4.45□□□□□ -1.7
VPS35-208ENST00000568612 TGFB1P01137 390 aa4.44□□□□□ -1.7
VPS35-208ENST00000568612 SSTR4P31391 388 aa4.44□□□□□ -1.7
VPS35-208ENST00000568612 TAGLNQ01995 201 aaKnown RBP4.44□□□□□ -1.7
VPS35-208ENST00000568612 MAP7Q14244 749 aa4.44□□□□□ -1.7
VPS35-208ENST00000568612 LRRC14Q15048 493 aa4.44□□□□□ -1.7
VPS35-208ENST00000568612 MAP3K11Q16584 847 aa4.44□□□□□ -1.7
VPS35-208ENST00000568612 LLGL2Q6P1M3 1020 aa4.44□□□□□ -1.7
VPS35-208ENST00000568612 MPRIPQ6WCQ1 1025 aa4.44□□□□□ -1.7
VPS35-208ENST00000568612 PDZD3Q86UT5 571 aa4.44□□□□□ -1.7
VPS35-208ENST00000568612 Q8N3U1 123 aa4.44□□□□□ -1.7
VPS35-208ENST00000568612 GPBAR1Q8TDU6 330 aa4.44□□□□□ -1.7
VPS35-208ENST00000568612 ATXN3LQ9H3M9 355 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms