RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 EHHADHQ08426 723 aa7.92□□□□□ -1.14
VPS13C-210ENST00000561258 ZNF423Q2M1K9 1284 aa7.92□□□□□ -1.14
VPS13C-210ENST00000561258 YIPF2Q9BWQ6 316 aa7.92□□□□□ -1.14
VPS13C-210ENST00000561258 ZFYVE28Q9HCC9 887 aa7.92□□□□□ -1.14
VPS13C-210ENST00000561258 CCDC87Q9NVE4 849 aa7.92□□□□□ -1.14
VPS13C-210ENST00000561258 A0A096LPE4 126 aa7.91□□□□□ -1.14
VPS13C-210ENST00000561258 A0A1W2PPZ6 126 aa7.91□□□□□ -1.14
VPS13C-210ENST00000561258 P4HBP07237 508 aaKnown RBP7.91□□□□□ -1.14
VPS13C-210ENST00000561258 MAOBP27338 520 aa7.91□□□□□ -1.14
VPS13C-210ENST00000561258 PCDH1Q08174 1060 aa7.91□□□□□ -1.14
VPS13C-210ENST00000561258 SPRED3Q2MJR0 410 aa7.91□□□□□ -1.14
VPS13C-210ENST00000561258 EAPPQ56P03 285 aaPredicted RBP7.91□□□□□ -1.14
VPS13C-210ENST00000561258 TMC7Q7Z402 723 aa7.91□□□□□ -1.14
VPS13C-210ENST00000561258 FLCNQ8NFG4 579 aa7.91□□□□□ -1.14
VPS13C-210ENST00000561258 LRRC4CQ9HCJ2 640 aa7.91□□□□□ -1.14
VPS13C-210ENST00000561258 ZC3H7BQ9UGR2 993 aaKnown RBP7.91□□□□□ -1.14
VPS13C-210ENST00000561258 USP5P45974 858 aa7.9□□□□□ -1.14
VPS13C-210ENST00000561258 GRIA4P48058 902 aa7.9□□□□□ -1.14
VPS13C-210ENST00000561258 AKAP4Q5JQC9 854 aa7.9□□□□□ -1.14
VPS13C-210ENST00000561258 ZNF765Q7L2R6 523 aa7.9□□□□□ -1.14
VPS13C-210ENST00000561258 DYMQ7RTS9 669 aa7.9□□□□□ -1.14
VPS13C-210ENST00000561258 PAK6Q9NQU5 681 aaPredicted RBP7.9□□□□□ -1.14
VPS13C-210ENST00000561258 ECEL1O95672 775 aa7.89□□□□□ -1.15
VPS13C-210ENST00000561258 ITGB5P18084 799 aa7.89□□□□□ -1.15
VPS13C-210ENST00000561258 FMR1Q06787 632 aaKnown RBP eCLIP7.89□□□□□ -1.15
VPS13C-210ENST00000561258 POU4F3Q15319 338 aa7.89□□□□□ -1.15
VPS13C-210ENST00000561258 LCE1DQ5T752 114 aa7.89□□□□□ -1.15
VPS13C-210ENST00000561258 CLEC4MQ9H2X3 399 aaPredicted RBP7.89□□□□□ -1.15
VPS13C-210ENST00000561258 SEMA6CQ9H3T2 930 aa7.89□□□□□ -1.15
VPS13C-210ENST00000561258 A0A1W2PP55 124 aa7.88□□□□□ -1.15
VPS13C-210ENST00000561258 TREHO43280 583 aa7.88□□□□□ -1.15
VPS13C-210ENST00000561258 NDUFB5O43674 189 aa7.88□□□□□ -1.15
VPS13C-210ENST00000561258 MAP7Q14244 749 aa7.88□□□□□ -1.15
VPS13C-210ENST00000561258 DUSP27Q5VZP5 1158 aa7.88□□□□□ -1.15
VPS13C-210ENST00000561258 CCNJLQ8IV13 435 aa7.88□□□□□ -1.15
VPS13C-210ENST00000561258 GJD3Q8N144 294 aa7.88□□□□□ -1.15
VPS13C-210ENST00000561258 ASIC4Q96FT7 647 aa7.88□□□□□ -1.15
VPS13C-210ENST00000561258 C8orf37Q96NL8 207 aa7.88□□□□□ -1.15
VPS13C-210ENST00000561258 TCF12Q99081 682 aa7.88□□□□□ -1.15
VPS13C-210ENST00000561258 FAM105AQ9NUU6 356 aa7.88□□□□□ -1.15
VPS13C-210ENST00000561258 DYNC1LI2O43237 492 aaPredicted RBP7.87□□□□□ -1.15
VPS13C-210ENST00000561258 CYP11A1P05108 521 aa7.87□□□□□ -1.15
VPS13C-210ENST00000561258 JAG1P78504 1218 aa7.87□□□□□ -1.15
VPS13C-210ENST00000561258 MRPL58Q14197 206 aaKnown RBP7.87□□□□□ -1.15
VPS13C-210ENST00000561258 CITED4Q96RK1 184 aa7.87□□□□□ -1.15
VPS13C-210ENST00000561258 ACSS3Q9H6R3 686 aa7.87□□□□□ -1.15
VPS13C-210ENST00000561258 LIN7BQ9HAP6 207 aa7.87□□□□□ -1.15
VPS13C-210ENST00000561258 AP4E1Q9UPM8 1137 aa7.87□□□□□ -1.15
VPS13C-210ENST00000561258 IGHA2P01877 340 aa7.86□□□□□ -1.15
VPS13C-210ENST00000561258 C8AP07357 584 aa7.86□□□□□ -1.15
VPS13C-210ENST00000561258 DSC3Q14574 896 aa7.86□□□□□ -1.15
VPS13C-210ENST00000561258 TRIM56Q9BRZ2 755 aaKnown RBP7.86□□□□□ -1.15
VPS13C-210ENST00000561258 LGR6Q9HBX8 967 aa7.86□□□□□ -1.15
VPS13C-210ENST00000561258 RAD18Q9NS91 495 aa7.86□□□□□ -1.15
VPS13C-210ENST00000561258 BRPF3Q9ULD4 1205 aa7.86□□□□□ -1.15
VPS13C-210ENST00000561258 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.85□□□□□ -1.15
VPS13C-210ENST00000561258 EIF4EBP3O60516 100 aaPredicted RBP7.85□□□□□ -1.15
VPS13C-210ENST00000561258 JUNBP17275 347 aaPredicted RBP7.85□□□□□ -1.15
VPS13C-210ENST00000561258 ASPAP45381 313 aa7.85□□□□□ -1.15
VPS13C-210ENST00000561258 TSNAXIP1Q2TAA8 658 aa7.85□□□□□ -1.15
VPS13C-210ENST00000561258 USPL1Q5W0Q7 1092 aa7.85□□□□□ -1.15
VPS13C-210ENST00000561258 SEZ6L2Q6UXD5 910 aa7.85□□□□□ -1.15
VPS13C-210ENST00000561258 ZNF574Q6ZN55 896 aaPredicted RBP7.85□□□□□ -1.15
VPS13C-210ENST00000561258 GALNT12Q8IXK2 581 aa7.85□□□□□ -1.15
VPS13C-210ENST00000561258 POU5F2Q8N7G0 328 aa7.85□□□□□ -1.15
VPS13C-210ENST00000561258 AGBL5Q8NDL9 886 aa7.85□□□□□ -1.15
VPS13C-210ENST00000561258 BCL11AQ9H165 835 aa7.85□□□□□ -1.15
VPS13C-210ENST00000561258 C1GALT1Q9NS00 363 aa7.85□□□□□ -1.15
VPS13C-210ENST00000561258 ABCC9O60706 1549 aa7.84□□□□□ -1.15
VPS13C-210ENST00000561258 CYP27A1Q02318 531 aa7.84□□□□□ -1.15
VPS13C-210ENST00000561258 FAM129BQ96TA1 746 aa7.84□□□□□ -1.15
VPS13C-210ENST00000561258 KRTAP4-7Q9BYR0 210 aa7.84□□□□□ -1.15
VPS13C-210ENST00000561258 DAGLAQ9Y4D2 1042 aa7.84□□□□□ -1.15
VPS13C-210ENST00000561258 WFDC3Q8IUB2 231 aa7.83□□□□□ -1.16
VPS13C-210ENST00000561258 BCL7CQ8WUZ0 217 aaPredicted RBP7.83□□□□□ -1.16
VPS13C-210ENST00000561258 DMRTB1Q96MA1 342 aa7.83□□□□□ -1.16
VPS13C-210ENST00000561258 CORO1BQ9BR76 489 aa7.83□□□□□ -1.16
VPS13C-210ENST00000561258 GSX1Q9H4S2 264 aaPredicted RBP7.83□□□□□ -1.16
VPS13C-210ENST00000561258 GPR182O15218 404 aa7.82□□□□□ -1.16
VPS13C-210ENST00000561258 AOC2O75106 756 aa7.82□□□□□ -1.16
VPS13C-210ENST00000561258 PAPLNO95428 1278 aa7.82□□□□□ -1.16
VPS13C-210ENST00000561258 ZC3H6P61129 1189 aaKnown RBP7.82□□□□□ -1.16
VPS13C-210ENST00000561258 HP1BP3Q5SSJ5 553 aaPredicted RBP7.82□□□□□ -1.16
VPS13C-210ENST00000561258 LDLRAD1Q5T700 205 aa7.82□□□□□ -1.16
VPS13C-210ENST00000561258 SPRED2Q7Z698 418 aa7.82□□□□□ -1.16
VPS13C-210ENST00000561258 ALKBH8Q96BT7 664 aaKnown RBP7.82□□□□□ -1.16
VPS13C-210ENST00000561258 BACH2Q9BYV9 841 aa7.82□□□□□ -1.16
VPS13C-210ENST00000561258 PPP1R9AQ9ULJ8 1098 aa7.82□□□□□ -1.16
VPS13C-210ENST00000561258 SLC5A6Q9Y289 635 aa7.82□□□□□ -1.16
VPS13C-210ENST00000561258 PRPF40AO75400 957 aaKnown RBP7.81□□□□□ -1.16
VPS13C-210ENST00000561258 B3GALT4O96024 378 aa7.81□□□□□ -1.16
VPS13C-210ENST00000561258 PDE3AQ14432 1141 aa7.81□□□□□ -1.16
VPS13C-210ENST00000561258 OGFOD3Q6PK18 319 aa7.81□□□□□ -1.16
VPS13C-210ENST00000561258 WDR18Q9BV38 432 aa7.81□□□□□ -1.16
VPS13C-210ENST00000561258 ZNF576Q9H609 170 aa7.81□□□□□ -1.16
VPS13C-210ENST00000561258 LDHBP07195 334 aaKnown RBP7.8□□□□□ -1.16
VPS13C-210ENST00000561258 FGD1P98174 961 aa7.8□□□□□ -1.16
VPS13C-210ENST00000561258 PLCB3Q01970 1234 aa7.8□□□□□ -1.16
VPS13C-210ENST00000561258 BNIP3Q12983 259 aa7.8□□□□□ -1.16
VPS13C-210ENST00000561258 PDE3BQ13370 1112 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms