RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 AATFQ9NY61 560 aaKnown RBP eCLIP12.9□□□□□ -0.34
TPM1-229ENST00000561242 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.9□□□□□ -0.34
TPM1-229ENST00000561242 AOX1Q06278 1338 aa12.89□□□□□ -0.35
TPM1-229ENST00000561242 POLR3DP05423 398 aaPredicted RBP12.89□□□□□ -0.35
TPM1-229ENST00000561242 HIRAP54198 1017 aaPredicted RBP12.89□□□□□ -0.35
TPM1-229ENST00000561242 TCP10Q12799 353 aa12.89□□□□□ -0.35
TPM1-229ENST00000561242 RASA3Q14644 834 aa12.89□□□□□ -0.35
TPM1-229ENST00000561242 SPDYE2Q495Y8 402 aa12.89□□□□□ -0.35
TPM1-229ENST00000561242 CRACR2BQ8N4Y2 399 aaPredicted RBP12.89□□□□□ -0.35
TPM1-229ENST00000561242 KBTBD3Q8NAB2 608 aa12.89□□□□□ -0.35
TPM1-229ENST00000561242 RUFY2Q8WXA3 655 aa12.89□□□□□ -0.35
TPM1-229ENST00000561242 PIH1D3Q9NQM4 214 aaKnown RBP12.89□□□□□ -0.35
TPM1-229ENST00000561242 PGAP2Q9UHJ9 254 aa12.89□□□□□ -0.35
TPM1-229ENST00000561242 DAGLAQ9Y4D2 1042 aa12.89□□□□□ -0.35
TPM1-229ENST00000561242 GPR75-ASB3A0A0A6YYF3 556 aa12.88□□□□□ -0.35
TPM1-229ENST00000561242 RNF113AO15541 343 aaKnown RBP12.88□□□□□ -0.35
TPM1-229ENST00000561242 POTEIP0CG38 1075 aa12.88□□□□□ -0.35
TPM1-229ENST00000561242 POTEJP0CG39 1038 aa12.88□□□□□ -0.35
TPM1-229ENST00000561242 GNAT2P19087 354 aa12.88□□□□□ -0.35
TPM1-229ENST00000561242 ECE1P42892 770 aa12.88□□□□□ -0.35
TPM1-229ENST00000561242 FKBP1BP68106 108 aa12.88□□□□□ -0.35
TPM1-229ENST00000561242 GRM1Q13255 1194 aa12.88□□□□□ -0.35
TPM1-229ENST00000561242 FKBP1CQ5VVH2 108 aa12.88□□□□□ -0.35
TPM1-229ENST00000561242 FAM83AQ86UY5 434 aa12.88□□□□□ -0.35
TPM1-229ENST00000561242 GBA2Q9HCG7 927 aaPredicted RBP12.88□□□□□ -0.35
TPM1-229ENST00000561242 STAP2Q9UGK3 403 aa12.88□□□□□ -0.35
TPM1-229ENST00000561242 NDUFB9Q9Y6M9 179 aa12.88□□□□□ -0.35
TPM1-229ENST00000561242 ZNF532Q9HCE3 1301 aa12.88□□□□□ -0.35
TPM1-229ENST00000561242 COL4A1P02462 1669 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 ADM5C9JUS6 153 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 ENTPD3O75355 529 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 SLC3A2P08195 630 aaKnown RBP12.87□□□□□ -0.35
TPM1-229ENST00000561242 PDE6AP16499 860 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 HSPA6P17066 643 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 RGS3P49796 1198 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 PRKG1Q13976 671 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 UBE3CQ15386 1083 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 TSHZ3Q63HK5 1081 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 CDC42EP5Q6NZY7 148 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 TTC6Q86TZ1 520 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 TICAM2Q86XR7 235 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 MIGA1Q8NAN2 632 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 FAM151AQ8WW52 585 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 CDCA5Q96FF9 252 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 DHX36Q9H2U1 1008 aaKnown RBP12.87□□□□□ -0.35
TPM1-229ENST00000561242 ANTXR1Q9H6X2 564 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 CSADQ9Y600 493 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 SPEF2Q9C093 1822 aa12.87□□□□□ -0.35
TPM1-229ENST00000561242 EIF5BO60841 1220 aaKnown RBP12.86□□□□□ -0.35
TPM1-229ENST00000561242 WDHD1O75717 1129 aaPredicted RBP12.86□□□□□ -0.35
TPM1-229ENST00000561242 EGFRP00533 1210 aa12.86□□□□□ -0.35
TPM1-229ENST00000561242 DEFB115Q30KQ5 88 aa12.86□□□□□ -0.35
TPM1-229ENST00000561242 APOBEC3HQ6NTF7 200 aaKnown RBP12.86□□□□□ -0.35
TPM1-229ENST00000561242 KIAA1211Q6ZU35 1233 aa12.86□□□□□ -0.35
TPM1-229ENST00000561242 TGFBRAP1Q8WUH2 860 aa12.86□□□□□ -0.35
TPM1-229ENST00000561242 BEGAINQ9BUH8 593 aa12.86□□□□□ -0.35
TPM1-229ENST00000561242 ZNF287Q9HBT7 754 aa12.86□□□□□ -0.35
TPM1-229ENST00000561242 CREBZFQ9NS37 354 aa12.86□□□□□ -0.35
TPM1-229ENST00000561242 COL4A5P29400 1685 aa12.86□□□□□ -0.35
TPM1-229ENST00000561242 TRAF5O00463 557 aa12.85□□□□□ -0.35
TPM1-229ENST00000561242 ADD2P35612 726 aa12.85□□□□□ -0.35
TPM1-229ENST00000561242 CACNB3P54284 484 aa12.85□□□□□ -0.35
TPM1-229ENST00000561242 HUNKP57058 714 aa12.85□□□□□ -0.35
TPM1-229ENST00000561242 PPP4CP60510 307 aa12.85□□□□□ -0.35
TPM1-229ENST00000561242 GRIK5Q16478 980 aa12.85□□□□□ -0.35
TPM1-229ENST00000561242 PLEKHM2Q8IWE5 1019 aa12.85□□□□□ -0.35
TPM1-229ENST00000561242 APPBP2Q92624 585 aa12.85□□□□□ -0.35
TPM1-229ENST00000561242 SLC10A4Q96EP9 437 aa12.85□□□□□ -0.35
TPM1-229ENST00000561242 CSRNP1Q96S65 589 aa12.85□□□□□ -0.35
TPM1-229ENST00000561242 ANGEL1Q9UNK9 670 aaKnown RBP12.85□□□□□ -0.35
TPM1-229ENST00000561242 SLC4A4Q9Y6R1 1079 aa12.85□□□□□ -0.35
TPM1-229ENST00000561242 GAKO14976 1311 aa12.85□□□□□ -0.35
TPM1-229ENST00000561242 TIAM2Q8IVF5 1701 aa12.85□□□□□ -0.35
TPM1-229ENST00000561242 WDR90Q96KV7 1748 aa12.85□□□□□ -0.35
TPM1-229ENST00000561242 TDO2P48775 406 aa12.84□□□□□ -0.35
TPM1-229ENST00000561242 ZNF157P51786 506 aaPredicted RBP12.84□□□□□ -0.35
TPM1-229ENST00000561242 PRAMEF18Q5VWM3 479 aa12.84□□□□□ -0.35
TPM1-229ENST00000561242 MAPKAPK5Q8IW41 473 aa12.84□□□□□ -0.35
TPM1-229ENST00000561242 OTUD7AQ8TE49 926 aaPredicted RBP12.84□□□□□ -0.35
TPM1-229ENST00000561242 SH3RF3Q8TEJ3 882 aaPredicted RBP12.84□□□□□ -0.35
TPM1-229ENST00000561242 CCDC102AQ96A19 550 aa12.84□□□□□ -0.35
TPM1-229ENST00000561242 EDC3Q96F86 508 aaKnown RBP12.84□□□□□ -0.35
TPM1-229ENST00000561242 IDI2Q9BXS1 227 aa12.84□□□□□ -0.35
TPM1-229ENST00000561242 ZNF341Q9BYN7 854 aa12.84□□□□□ -0.35
TPM1-229ENST00000561242 OSBPL3Q9H4L5 887 aa12.84□□□□□ -0.35
TPM1-229ENST00000561242 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.84□□□□□ -0.35
TPM1-229ENST00000561242 PICK1Q9NRD5 415 aa12.84□□□□□ -0.35
TPM1-229ENST00000561242 PI4KBQ9UBF8 816 aa12.84□□□□□ -0.35
TPM1-229ENST00000561242 SBF1O95248 1867 aa12.83□□□□□ -0.36
TPM1-229ENST00000561242 MBD4O95243 580 aa12.83□□□□□ -0.36
TPM1-229ENST00000561242 ITGBL1O95965 494 aaPredicted RBP12.83□□□□□ -0.36
TPM1-229ENST00000561242 FOXP4Q8IVH2 680 aaPredicted RBP12.83□□□□□ -0.36
TPM1-229ENST00000561242 ZBED3Q96IU2 234 aaPredicted RBP12.83□□□□□ -0.36
TPM1-229ENST00000561242 TMEM39BQ9GZU3 492 aa12.83□□□□□ -0.36
TPM1-229ENST00000561242 HELLSQ9NRZ9 838 aa12.83□□□□□ -0.36
TPM1-229ENST00000561242 ATP8A2Q9NTI2 1148 aa12.83□□□□□ -0.36
TPM1-229ENST00000561242 MCM9Q9NXL9 1143 aa12.83□□□□□ -0.36
TPM1-229ENST00000561242 SCAF8Q9UPN6 1271 aaKnown RBP12.83□□□□□ -0.36
TPM1-229ENST00000561242 ASTN2O75129 1339 aaPredicted RBP12.83□□□□□ -0.36
TPM1-229ENST00000561242 NPM3O75607 178 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms