RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 DYNLL1P63167 89 aaKnown RBP15.21■□□□□ 0.03
SNX1-211ENST00000560829 MCTP1Q6DN14 999 aa15.21■□□□□ 0.03
SNX1-211ENST00000560829 TMEM87BQ96K49 555 aa15.21■□□□□ 0.03
SNX1-211ENST00000560829 MTA3Q9BTC8 594 aa15.21■□□□□ 0.03
SNX1-211ENST00000560829 KRT23Q9C075 422 aa15.21■□□□□ 0.03
SNX1-211ENST00000560829 RNF41Q9H4P4 317 aaPredicted RBP15.21■□□□□ 0.03
SNX1-211ENST00000560829 LMBRD1Q9NUN5 540 aa15.21■□□□□ 0.03
SNX1-211ENST00000560829 F13A1P00488 732 aa15.2■□□□□ 0.02
SNX1-211ENST00000560829 LDHBP07195 334 aaKnown RBP15.2■□□□□ 0.02
SNX1-211ENST00000560829 STYK1Q6J9G0 422 aa15.2■□□□□ 0.02
SNX1-211ENST00000560829 CYB5R4Q7L1T6 521 aa15.2■□□□□ 0.02
SNX1-211ENST00000560829 DZIP1Q86YF9 867 aaKnown RBP15.2■□□□□ 0.02
SNX1-211ENST00000560829 SDR42E1Q8WUS8 393 aa15.2■□□□□ 0.02
SNX1-211ENST00000560829 TACC3Q9Y6A5 838 aa15.2■□□□□ 0.02
SNX1-211ENST00000560829 SH2B2O14492 632 aaPredicted RBP15.2■□□□□ 0.02
SNX1-211ENST00000560829 CTDSPL2Q05D32 466 aa15.2■□□□□ 0.02
SNX1-211ENST00000560829 PPARAQ07869 468 aa15.2■□□□□ 0.02
SNX1-211ENST00000560829 SF3B2Q13435 895 aaKnown RBP15.2■□□□□ 0.02
SNX1-211ENST00000560829 FOXD4L5Q5VV16 416 aaPredicted RBP15.2■□□□□ 0.02
SNX1-211ENST00000560829 LARP1BQ659C4 914 aaKnown RBP15.2■□□□□ 0.02
SNX1-211ENST00000560829 MFSD6Q6ZSS7 791 aa15.2■□□□□ 0.02
SNX1-211ENST00000560829 NSUN7Q8NE18 718 aaKnown RBP15.2■□□□□ 0.02
SNX1-211ENST00000560829 FOXD4L4Q8WXT5 416 aaPredicted RBP15.2■□□□□ 0.02
SNX1-211ENST00000560829 GPHNQ9NQX3 736 aaPredicted RBP15.2■□□□□ 0.02
SNX1-211ENST00000560829 ANGEL1Q9UNK9 670 aaKnown RBP15.2■□□□□ 0.02
SNX1-211ENST00000560829 ATP6V1DQ9Y5K8 247 aa15.2■□□□□ 0.02
SNX1-211ENST00000560829 FAM205AQ6ZU69 1335 aa15.19■□□□□ 0.02
SNX1-211ENST00000560829 B4E1Z4 1266 aa15.19■□□□□ 0.02
SNX1-211ENST00000560829 C6orf229H3BNL8 230 aa15.19■□□□□ 0.02
SNX1-211ENST00000560829 JAK2O60674 1132 aa15.19■□□□□ 0.02
SNX1-211ENST00000560829 CTDNEP1O95476 244 aa15.19■□□□□ 0.02
SNX1-211ENST00000560829 GSTO1P78417 241 aa15.19■□□□□ 0.02
SNX1-211ENST00000560829 HMGN5P82970 282 aaKnown RBP15.19■□□□□ 0.02
SNX1-211ENST00000560829 NKX2-3Q8TAU0 364 aa15.19■□□□□ 0.02
SNX1-211ENST00000560829 CRNKL1Q9BZJ0 848 aaKnown RBP15.19■□□□□ 0.02
SNX1-211ENST00000560829 COA1Q9GZY4 146 aa15.19■□□□□ 0.02
SNX1-211ENST00000560829 ATP8A2Q9NTI2 1148 aa15.19■□□□□ 0.02
SNX1-211ENST00000560829 BRPF3Q9ULD4 1205 aa15.19■□□□□ 0.02
SNX1-211ENST00000560829 COL11A2P13942 1736 aaPredicted RBP15.19■□□□□ 0.02
SNX1-211ENST00000560829 KLF18A0A0U1RQI7 1052 aa15.18■□□□□ 0.02
SNX1-211ENST00000560829 PCP11498 1178 aaKnown RBP15.18■□□□□ 0.02
SNX1-211ENST00000560829 PPP4CP60510 307 aa15.18■□□□□ 0.02
SNX1-211ENST00000560829 C2CD5Q86YS7 1000 aa15.18■□□□□ 0.02
SNX1-211ENST00000560829 MPNDQ8N594 471 aa15.18■□□□□ 0.02
SNX1-211ENST00000560829 IGDCC4Q8TDY8 1250 aa15.18■□□□□ 0.02
SNX1-211ENST00000560829 TBC1D22AQ8WUA7 517 aa15.18■□□□□ 0.02
SNX1-211ENST00000560829 AATFQ9NY61 560 aaKnown RBP eCLIP15.18■□□□□ 0.02
SNX1-211ENST00000560829 HPS5Q9UPZ3 1129 aa15.18■□□□□ 0.02
SNX1-211ENST00000560829 JAG2Q9Y219 1238 aa15.18■□□□□ 0.02
SNX1-211ENST00000560829 H0YIN7 160 aa15.18■□□□□ 0.02
SNX1-211ENST00000560829 LDHCP07864 332 aa15.18■□□□□ 0.02
SNX1-211ENST00000560829 FGRP09769 529 aa15.18■□□□□ 0.02
SNX1-211ENST00000560829 LIFRP42702 1097 aa15.18■□□□□ 0.02
SNX1-211ENST00000560829 KLHL40Q2TBA0 621 aa15.18■□□□□ 0.02
SNX1-211ENST00000560829 SGMS1Q86VZ5 419 aa15.18■□□□□ 0.02
SNX1-211ENST00000560829 CERS3Q8IU89 383 aa15.18■□□□□ 0.02
SNX1-211ENST00000560829 ZSWIM5Q9P217 1185 aa15.18■□□□□ 0.02
SNX1-211ENST00000560829 KIAA1551Q9HCM1 1747 aa15.17■□□□□ 0.02
SNX1-211ENST00000560829 PTPDC1A2A3K4 754 aa15.17■□□□□ 0.02
SNX1-211ENST00000560829 KDM4AO75164 1064 aa15.17■□□□□ 0.02
SNX1-211ENST00000560829 SBK1Q52WX2 424 aa15.17■□□□□ 0.02
SNX1-211ENST00000560829 DPP8Q6V1X1 898 aaPredicted RBP15.17■□□□□ 0.02
SNX1-211ENST00000560829 DCP1AQ9NPI6 582 aaPredicted RBP15.17■□□□□ 0.02
SNX1-211ENST00000560829 KIF3AQ9Y496 699 aa15.17■□□□□ 0.02
SNX1-211ENST00000560829 MYH13Q9UKX3 1938 aa15.17■□□□□ 0.02
SNX1-211ENST00000560829 DHX16O60231 1041 aaKnown RBP15.16■□□□□ 0.02
SNX1-211ENST00000560829 DTNBO60941 627 aa15.16■□□□□ 0.02
SNX1-211ENST00000560829 CCT2P78371 535 aaKnown RBP15.16■□□□□ 0.02
SNX1-211ENST00000560829 GRIK5Q16478 980 aa15.16■□□□□ 0.02
SNX1-211ENST00000560829 CTR9Q6PD62 1173 aa15.16■□□□□ 0.02
SNX1-211ENST00000560829 TMEM87AQ8NBN3 555 aa15.16■□□□□ 0.02
SNX1-211ENST00000560829 FAM163AQ96GL9 167 aaPredicted RBP15.16■□□□□ 0.02
SNX1-211ENST00000560829 CHAMP1Q96JM3 812 aa15.16■□□□□ 0.02
SNX1-211ENST00000560829 TMX4Q9H1E5 349 aaPredicted RBP15.16■□□□□ 0.02
SNX1-211ENST00000560829 LY9Q9HBG7 655 aa15.16■□□□□ 0.02
SNX1-211ENST00000560829 INCENPQ9NQS7 918 aa15.16■□□□□ 0.02
SNX1-211ENST00000560829 MROH7-TTC4A0A0A0MT08 1334 aa15.16■□□□□ 0.02
SNX1-211ENST00000560829 VPS37CA5D8V6 355 aaPredicted RBP15.16■□□□□ 0.02
SNX1-211ENST00000560829 GOLGA8BA8MQT2 603 aa15.16■□□□□ 0.02
SNX1-211ENST00000560829 BAG3O95817 575 aa15.16■□□□□ 0.02
SNX1-211ENST00000560829 DEKP35659 375 aaKnown RBP15.16■□□□□ 0.02
SNX1-211ENST00000560829 DEFB132Q7Z7B7 95 aa15.16■□□□□ 0.02
SNX1-211ENST00000560829 ZC3H12CQ9C0D7 883 aaKnown RBP15.16■□□□□ 0.02
SNX1-211ENST00000560829 NCOA5Q9HCD5 579 aaKnown RBP15.16■□□□□ 0.02
SNX1-211ENST00000560829 ARPP21Q9UBL0 812 aaPredicted RBP15.16■□□□□ 0.02
SNX1-211ENST00000560829 MKRN1Q9UHC7 482 aaKnown RBP15.16■□□□□ 0.02
SNX1-211ENST00000560829 SUGT1Q9Y2Z0 365 aa15.16■□□□□ 0.02
SNX1-211ENST00000560829 NID2Q14112 1375 aa15.15■□□□□ 0.02
SNX1-211ENST00000560829 MINDY4BA8MYZ0 360 aa15.15■□□□□ 0.02
SNX1-211ENST00000560829 PRPF40AO75400 957 aaKnown RBP15.15■□□□□ 0.02
SNX1-211ENST00000560829 TMEM67Q5HYA8 995 aa15.15■□□□□ 0.02
SNX1-211ENST00000560829 APOA5Q6Q788 366 aa15.15■□□□□ 0.02
SNX1-211ENST00000560829 CDC37L1Q7L3B6 337 aa15.15■□□□□ 0.02
SNX1-211ENST00000560829 CNKSR1Q969H4 720 aa15.15■□□□□ 0.02
SNX1-211ENST00000560829 ZNF622Q969S3 477 aaKnown RBP eCLIP15.15■□□□□ 0.025e-7■■■■□ 20.8
SNX1-211ENST00000560829 RTFDC1Q9BY42 306 aaPredicted RBP15.15■□□□□ 0.02
SNX1-211ENST00000560829 USP17L12C9JPN9 530 aa15.14■□□□□ 0.01
SNX1-211ENST00000560829 USP17L21D6R901 530 aa15.14■□□□□ 0.01
SNX1-211ENST00000560829 NT5C2P49902 561 aa15.14■□□□□ 0.01
SNX1-211ENST00000560829 MFSD14BQ5SR56 506 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms