RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 CDC42EP5Q6NZY7 148 aa26.39■■□□□ 1.82
SNX1-210ENST00000560260 SLF2Q8IX21 1173 aa26.39■■□□□ 1.82
SNX1-210ENST00000560260 RFX7Q2KHR2 1363 aa26.39■■□□□ 1.82
SNX1-210ENST00000560260 ZNF532Q9HCE3 1301 aa26.39■■□□□ 1.82
SNX1-210ENST00000560260 CACNB3P54284 484 aa26.39■■□□□ 1.81
SNX1-210ENST00000560260 RHBDL3P58872 404 aa26.39■■□□□ 1.81
SNX1-210ENST00000560260 DLK2Q6UY11 383 aa26.39■■□□□ 1.81
SNX1-210ENST00000560260 GLIS2Q9BZE0 524 aaPredicted RBP26.39■■□□□ 1.81
SNX1-210ENST00000560260 PITPNM2Q9BZ72 1349 aa26.38■■□□□ 1.81
SNX1-210ENST00000560260 ADM5C9JUS6 153 aa26.38■■□□□ 1.81
SNX1-210ENST00000560260 LDHCP07864 332 aa26.38■■□□□ 1.81
SNX1-210ENST00000560260 DYNLL1P63167 89 aaKnown RBP26.37■■□□□ 1.81
SNX1-210ENST00000560260 MIGA1Q8NAN2 632 aa26.37■■□□□ 1.81
SNX1-210ENST00000560260 EVI5LQ96CN4 794 aa26.37■■□□□ 1.81
SNX1-210ENST00000560260 FSD1Q9BTV5 496 aa26.37■■□□□ 1.81
SNX1-210ENST00000560260 VEZTQ9HBM0 779 aa26.37■■□□□ 1.81
SNX1-210ENST00000560260 AATFQ9NY61 560 aaKnown RBP eCLIP26.37■■□□□ 1.81
SNX1-210ENST00000560260 AK9Q5TCS8 1911 aa26.36■■□□□ 1.81
SNX1-210ENST00000560260 CDK5RAP2Q96SN8 1893 aa26.36■■□□□ 1.81
SNX1-210ENST00000560260 MYO1BO43795 1136 aa26.36■■□□□ 1.81
SNX1-210ENST00000560260 FMR1Q06787 632 aaKnown RBP eCLIP26.36■■□□□ 1.81
SNX1-210ENST00000560260 CNTROBQ8N137 903 aa26.36■■□□□ 1.81
SNX1-210ENST00000560260 SMC1BQ8NDV3 1235 aa26.36■■□□□ 1.81
SNX1-210ENST00000560260 DCPSQ96C86 337 aaKnown RBP26.36■■□□□ 1.81
SNX1-210ENST00000560260 DDX24Q9GZR7 859 aaKnown RBP eCLIP26.36■■□□□ 1.812e-6■■□□□ 13.1
SNX1-210ENST00000560260 USP40Q9NVE5 1235 aa26.36■■□□□ 1.81
SNX1-210ENST00000560260 ITGBL1O95965 494 aaPredicted RBP26.35■■□□□ 1.81
SNX1-210ENST00000560260 RGS3P49796 1198 aa26.35■■□□□ 1.81
SNX1-210ENST00000560260 NFIAQ12857 509 aa26.35■■□□□ 1.81
SNX1-210ENST00000560260 KRT26Q7Z3Y9 468 aa26.35■■□□□ 1.81
SNX1-210ENST00000560260 CNTNAP1P78357 1384 aa26.34■■□□□ 1.81
SNX1-210ENST00000560260 TRIM6-TRIM34B2RNG4 842 aa26.34■■□□□ 1.81
SNX1-210ENST00000560260 TRAF5O00463 557 aa26.34■■□□□ 1.81
SNX1-210ENST00000560260 PPP4CP60510 307 aa26.34■■□□□ 1.81
SNX1-210ENST00000560260 UBE3CQ15386 1083 aa26.34■■□□□ 1.81
SNX1-210ENST00000560260 TMED8Q6PL24 325 aaPredicted RBP26.34■■□□□ 1.81
SNX1-210ENST00000560260 USP48Q86UV5 1035 aa26.34■■□□□ 1.81
SNX1-210ENST00000560260 APOBEC3FQ8IUX4 373 aaKnown RBP26.34■■□□□ 1.81
SNX1-210ENST00000560260 SH3RF3Q8TEJ3 882 aaPredicted RBP26.34■■□□□ 1.81
SNX1-210ENST00000560260 RIOK1Q9BRS2 568 aaKnown RBP26.34■■□□□ 1.81
SNX1-210ENST00000560260 TCP10L2B9ZVM9 353 aa26.33■■□□□ 1.81
SNX1-210ENST00000560260 RNF113AO15541 343 aaKnown RBP26.33■■□□□ 1.81
SNX1-210ENST00000560260 RILPL2Q969X0 211 aa26.33■■□□□ 1.81
SNX1-210ENST00000560260 FOCADQ5VW36 1801 aa26.32■■□□□ 1.8
SNX1-210ENST00000560260 WDHD1O75717 1129 aaPredicted RBP26.32■■□□□ 1.8
SNX1-210ENST00000560260 ZSCAN25Q6NSZ9 544 aa26.32■■□□□ 1.8
SNX1-210ENST00000560260 CDC37L1Q7L3B6 337 aa26.32■■□□□ 1.8
SNX1-210ENST00000560260 SULF1Q8IWU6 871 aa26.32■■□□□ 1.8
SNX1-210ENST00000560260 DDX4Q9NQI0 724 aaKnown RBP26.32■■□□□ 1.8
SNX1-210ENST00000560260 FAM198AQ9UFP1 575 aa26.32■■□□□ 1.8
SNX1-210ENST00000560260 SDSP20132 328 aa26.31■■□□□ 1.8
SNX1-210ENST00000560260 FSTL1Q12841 308 aa26.31■■□□□ 1.8
SNX1-210ENST00000560260 CDAN1Q8IWY9 1227 aa26.31■■□□□ 1.8
SNX1-210ENST00000560260 OSBP2Q969R2 916 aa26.31■■□□□ 1.8
SNX1-210ENST00000560260 PUS7LQ9H0K6 701 aaKnown RBP26.31■■□□□ 1.8
SNX1-210ENST00000560260 PASKQ96RG2 1323 aa26.31■■□□□ 1.8
SNX1-210ENST00000560260 PRAMEF18Q5VWM3 479 aa26.3■■□□□ 1.8
SNX1-210ENST00000560260 LCORLQ8N3X6 602 aa26.3■■□□□ 1.8
SNX1-210ENST00000560260 IDI2Q9BXS1 227 aa26.3■■□□□ 1.8
SNX1-210ENST00000560260 TMOD2Q9NZR1 351 aa26.3■■□□□ 1.8
SNX1-210ENST00000560260 GTF3C3Q9Y5Q9 886 aa26.3■■□□□ 1.8
SNX1-210ENST00000560260 SSC5DA1L4H1 1573 aa26.29■■□□□ 1.8
SNX1-210ENST00000560260 MAGEB6P1A0A0J9YX57 407 aa26.29■■□□□ 1.8
SNX1-210ENST00000560260 MBD4O95243 580 aa26.29■■□□□ 1.8
SNX1-210ENST00000560260 BAG3O95817 575 aa26.29■■□□□ 1.8
SNX1-210ENST00000560260 ZFYP08048 801 aaPredicted RBP26.29■■□□□ 1.8
SNX1-210ENST00000560260 RASA3Q14644 834 aa26.29■■□□□ 1.8
SNX1-210ENST00000560260 TEX11Q8IYF3 940 aa26.29■■□□□ 1.8
SNX1-210ENST00000560260 APPBP2Q92624 585 aa26.29■■□□□ 1.8
SNX1-210ENST00000560260 SEC62Q99442 399 aaKnown RBP26.29■■□□□ 1.8
SNX1-210ENST00000560260 NOL10Q9BSC4 688 aaKnown RBP26.29■■□□□ 1.8
SNX1-210ENST00000560260 DEFB129Q9H1M3 183 aa26.29■■□□□ 1.8
SNX1-210ENST00000560260 DDX60LQ5H9U9 1706 aaKnown RBP26.28■■□□□ 1.8
SNX1-210ENST00000560260 M0R2C6 588 aa26.28■■□□□ 1.8
SNX1-210ENST00000560260 ZMYM1Q5SVZ6 1142 aa26.28■■□□□ 1.8
SNX1-210ENST00000560260 FKBP1CQ5VVH2 108 aa26.28■■□□□ 1.8
SNX1-210ENST00000560260 ZFPM1Q8IX07 1006 aa26.28■■□□□ 1.8
SNX1-210ENST00000560260 CDCA5Q96FF9 252 aa26.28■■□□□ 1.8
SNX1-210ENST00000560260 TMEM39BQ9GZU3 492 aa26.28■■□□□ 1.8
SNX1-210ENST00000560260 ARMT1Q9H993 441 aa26.28■■□□□ 1.8
SNX1-210ENST00000560260 TEPSINQ96N21 525 aa26.27■■□□□ 1.8
SNX1-210ENST00000560260 PLCG2P16885 1265 aa26.26■■□□□ 1.79
SNX1-210ENST00000560260 TCP10Q12799 353 aa26.26■■□□□ 1.79
SNX1-210ENST00000560260 PICALMQ13492 652 aa26.26■■□□□ 1.79
SNX1-210ENST00000560260 TNFAIP1Q13829 316 aa26.26■■□□□ 1.79
SNX1-210ENST00000560260 FAM83AQ86UY5 434 aa26.26■■□□□ 1.79
SNX1-210ENST00000560260 FAM227BQ96M60 508 aa26.26■■□□□ 1.79
SNX1-210ENST00000560260 TRPM7Q96QT4 1865 aa26.26■■□□□ 1.79
SNX1-210ENST00000560260 NAV1Q8NEY1 1877 aa26.25■■□□□ 1.79
SNX1-210ENST00000560260 RPAP1Q9BWH6 1393 aaPredicted RBP26.25■■□□□ 1.79
SNX1-210ENST00000560260 A0A0D9SFI3 127 aa26.25■■□□□ 1.79
SNX1-210ENST00000560260 PPP2R3BQ9Y5P8 575 aa26.25■■□□□ 1.79
SNX1-210ENST00000560260 FLT1P17948 1338 aa26.24■■□□□ 1.79
SNX1-210ENST00000560260 NMIQ13287 307 aaPredicted RBP26.24■■□□□ 1.79
SNX1-210ENST00000560260 LRRFIP1Q32MZ4 808 aaKnown RBP26.24■■□□□ 1.79
SNX1-210ENST00000560260 SH3BP5LQ7L8J4 393 aa26.24■■□□□ 1.79
SNX1-210ENST00000560260 MAPKAPK5Q8IW41 473 aa26.24■■□□□ 1.79
SNX1-210ENST00000560260 TGFBRAP1Q8WUH2 860 aa26.24■■□□□ 1.79
SNX1-210ENST00000560260 FAM151AQ8WW52 585 aa26.24■■□□□ 1.79
SNX1-210ENST00000560260 PRKAB2O43741 272 aa26.23■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms