RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 ZNF622Q969S3 477 aaKnown RBP eCLIP14.97□□□□□ -0.01
USP3-213ENST00000559711 CHMP4CQ96CF2 233 aa14.97□□□□□ -0.01
USP3-213ENST00000559711 TMX4Q9H1E5 349 aaPredicted RBP14.97□□□□□ -0.01
USP3-213ENST00000559711 TACC3Q9Y6A5 838 aa14.97□□□□□ -0.01
USP3-213ENST00000559711 FAM205AQ6ZU69 1335 aa14.96□□□□□ -0.01
USP3-213ENST00000559711 QSER1Q2KHR3 1735 aa14.96□□□□□ -0.01
USP3-213ENST00000559711 ZSCAN22P10073 491 aaPredicted RBP14.96□□□□□ -0.01
USP3-213ENST00000559711 PPP4CP60510 307 aa14.96□□□□□ -0.01
USP3-213ENST00000559711 CTDSPL2Q05D32 466 aa14.96□□□□□ -0.01
USP3-213ENST00000559711 PPARAQ07869 468 aa14.96□□□□□ -0.01
USP3-213ENST00000559711 DPP8Q6V1X1 898 aaPredicted RBP14.96□□□□□ -0.01
USP3-213ENST00000559711 MFSD6Q6ZSS7 791 aa14.96□□□□□ -0.01
USP3-213ENST00000559711 CYB5R4Q7L1T6 521 aa14.96□□□□□ -0.01
USP3-213ENST00000559711 CCDC125Q86Z20 511 aa14.96□□□□□ -0.01
USP3-213ENST00000559711 NKX2-3Q8TAU0 364 aa14.96□□□□□ -0.01
USP3-213ENST00000559711 SLC16A10Q8TF71 515 aa14.96□□□□□ -0.01
USP3-213ENST00000559711 TBC1D22AQ8WUA7 517 aa14.96□□□□□ -0.01
USP3-213ENST00000559711 CRNKL1Q9BZJ0 848 aaKnown RBP14.96□□□□□ -0.01
USP3-213ENST00000559711 KRT23Q9C075 422 aa14.96□□□□□ -0.01
USP3-213ENST00000559711 RNF41Q9H4P4 317 aaPredicted RBP14.96□□□□□ -0.01
USP3-213ENST00000559711 GPHNQ9NQX3 736 aaPredicted RBP14.96□□□□□ -0.01
USP3-213ENST00000559711 ATP8A2Q9NTI2 1148 aa14.96□□□□□ -0.01
USP3-213ENST00000559711 AATFQ9NY61 560 aaKnown RBP eCLIP14.96□□□□□ -0.01
USP3-213ENST00000559711 NEDD4P46934 1319 aa14.96□□□□□ -0.02
USP3-213ENST00000559711 B4E1Z4 1266 aa14.95□□□□□ -0.02
USP3-213ENST00000559711 LDHCP07864 332 aa14.95□□□□□ -0.02
USP3-213ENST00000559711 PDCP20941 246 aa14.95□□□□□ -0.02
USP3-213ENST00000559711 GRIK5Q16478 980 aa14.95□□□□□ -0.02
USP3-213ENST00000559711 OLFM4Q6UX06 510 aa14.95□□□□□ -0.02
USP3-213ENST00000559711 SMARCC2Q8TAQ2 1214 aa14.95□□□□□ -0.02
USP3-213ENST00000559711 CNKSR1Q969H4 720 aa14.95□□□□□ -0.02
USP3-213ENST00000559711 TMEM87BQ96K49 555 aa14.95□□□□□ -0.02
USP3-213ENST00000559711 ZC3H12CQ9C0D7 883 aaKnown RBP14.95□□□□□ -0.02
USP3-213ENST00000559711 PDGFDQ9GZP0 370 aaPredicted RBP14.95□□□□□ -0.02
USP3-213ENST00000559711 SH2B2O14492 632 aaPredicted RBP14.94□□□□□ -0.02
USP3-213ENST00000559711 TRAK2O60296 914 aa14.94□□□□□ -0.02
USP3-213ENST00000559711 IGDCC4Q8TDY8 1250 aa14.94□□□□□ -0.02
USP3-213ENST00000559711 MTA3Q9BTC8 594 aa14.94□□□□□ -0.02
USP3-213ENST00000559711 DCP1AQ9NPI6 582 aaPredicted RBP14.94□□□□□ -0.02
USP3-213ENST00000559711 INCENPQ9NQS7 918 aa14.94□□□□□ -0.02
USP3-213ENST00000559711 ANGEL1Q9UNK9 670 aaKnown RBP14.94□□□□□ -0.02
USP3-213ENST00000559711 MTMR6Q9Y217 621 aa14.94□□□□□ -0.02
USP3-213ENST00000559711 FGRP09769 529 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 FOXD4L5Q5VV16 416 aaPredicted RBP14.93□□□□□ -0.02
USP3-213ENST00000559711 LARP1BQ659C4 914 aaKnown RBP14.93□□□□□ -0.02
USP3-213ENST00000559711 CTR9Q6PD62 1173 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 CERS3Q8IU89 383 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 NSUN7Q8NE18 718 aaKnown RBP14.93□□□□□ -0.02
USP3-213ENST00000559711 C7orf43Q8WVR3 580 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 FOXD4L4Q8WXT5 416 aaPredicted RBP14.93□□□□□ -0.02
USP3-213ENST00000559711 FAM163AQ96GL9 167 aaPredicted RBP14.93□□□□□ -0.02
USP3-213ENST00000559711 EYA3Q99504 573 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 ZSWIM5Q9P217 1185 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 BRPF3Q9ULD4 1205 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 SUGT1Q9Y2Z0 365 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 DUOX1Q9NRD9 1551 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 LAMA4Q16363 1823 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 RIMBP2O15034 1052 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 JAK2O60674 1132 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 CTDNEP1O95476 244 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 BAG3O95817 575 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 PCP11498 1178 aaKnown RBP14.93□□□□□ -0.02
USP3-213ENST00000559711 CHRNA5P30532 468 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 LIFRP42702 1097 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 SKOR2Q2VWA4 1001 aaPredicted RBP14.93□□□□□ -0.02
USP3-213ENST00000559711 SBK1Q52WX2 424 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 MFSD14BQ5SR56 506 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 MCTP1Q6DN14 999 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 SGMS1Q86VZ5 419 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 RTFDC1Q9BY42 306 aaPredicted RBP14.93□□□□□ -0.02
USP3-213ENST00000559711 HPS5Q9UPZ3 1129 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 COL11A2P13942 1736 aaPredicted RBP14.93□□□□□ -0.02
USP3-213ENST00000559711 TIAM2Q8IVF5 1701 aa14.93□□□□□ -0.02
USP3-213ENST00000559711 MROH7-TTC4A0A0A0MT08 1334 aa14.92□□□□□ -0.02
USP3-213ENST00000559711 KLF18A0A0U1RQI7 1052 aa14.92□□□□□ -0.02
USP3-213ENST00000559711 MINDY4BA8MYZ0 360 aa14.92□□□□□ -0.02
USP3-213ENST00000559711 DTNBO60941 627 aa14.92□□□□□ -0.02
USP3-213ENST00000559711 KDM4AO75164 1064 aa14.92□□□□□ -0.02
USP3-213ENST00000559711 F13A1P00488 732 aa14.92□□□□□ -0.02
USP3-213ENST00000559711 HMGN5P82970 282 aaKnown RBP14.92□□□□□ -0.02
USP3-213ENST00000559711 DIXDC1Q155Q3 683 aa14.92□□□□□ -0.02
USP3-213ENST00000559711 LMBRD1Q9NUN5 540 aa14.92□□□□□ -0.02
USP3-213ENST00000559711 MKRN1Q9UHC7 482 aaKnown RBP14.92□□□□□ -0.02
USP3-213ENST00000559711 GPR75-ASB3A0A0A6YYF3 556 aa14.91□□□□□ -0.02
USP3-213ENST00000559711 USP17L12C9JPN9 530 aa14.91□□□□□ -0.02
USP3-213ENST00000559711 USP17L21D6R901 530 aa14.91□□□□□ -0.02
USP3-213ENST00000559711 GTF2IP78347 998 aa14.91□□□□□ -0.02
USP3-213ENST00000559711 CCT2P78371 535 aaKnown RBP14.91□□□□□ -0.02
USP3-213ENST00000559711 CC2D2BQ6DHV5 1058 aa14.91□□□□□ -0.02
USP3-213ENST00000559711 SLF2Q8IX21 1173 aa14.91□□□□□ -0.02
USP3-213ENST00000559711 LY9Q9HBG7 655 aa14.91□□□□□ -0.02
USP3-213ENST00000559711 MAST2Q6P0Q8 1798 aa14.91□□□□□ -0.02
USP3-213ENST00000559711 C10orf71Q711Q0 1435 aa14.91□□□□□ -0.02
USP3-213ENST00000559711 DHX16O60231 1041 aaKnown RBP14.9□□□□□ -0.02
USP3-213ENST00000559711 TMEM67Q5HYA8 995 aa14.9□□□□□ -0.02
USP3-213ENST00000559711 NCOA5Q9HCD5 579 aaKnown RBP14.9□□□□□ -0.02
USP3-213ENST00000559711 ARPP21Q9UBL0 812 aaPredicted RBP14.9□□□□□ -0.02
USP3-213ENST00000559711 NAP1L2Q9ULW6 460 aaPredicted RBP14.9□□□□□ -0.02
USP3-213ENST00000559711 ATP6V1DQ9Y5K8 247 aa14.9□□□□□ -0.02
USP3-213ENST00000559711 GAKO14976 1311 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms