RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 PATL2C9JE40 543 aaKnown RBP12.93□□□□□ -0.34
SPG11-217ENST00000559511 SH2B2O14492 632 aaPredicted RBP12.93□□□□□ -0.34
SPG11-217ENST00000559511 DHX16O60231 1041 aaKnown RBP12.93□□□□□ -0.34
SPG11-217ENST00000559511 IFNL3Q8IZI9 196 aa12.93□□□□□ -0.34
SPG11-217ENST00000559511 CELF1Q92879 486 aaKnown RBP12.93□□□□□ -0.34
SPG11-217ENST00000559511 ANO8Q9HCE9 1232 aaPredicted RBP12.93□□□□□ -0.34
SPG11-217ENST00000559511 GJB4Q9NTQ9 266 aa12.93□□□□□ -0.34
SPG11-217ENST00000559511 BSDC1Q9NW68 430 aaPredicted RBP12.93□□□□□ -0.34
SPG11-217ENST00000559511 ORC3Q9UBD5 711 aaPredicted RBP12.93□□□□□ -0.34
SPG11-217ENST00000559511 EP400Q96L91 3159 aa12.93□□□□□ -0.34
SPG11-217ENST00000559511 ZMYM6O95789 1325 aa12.93□□□□□ -0.34
SPG11-217ENST00000559511 WTIPA6NIX2 430 aaPredicted RBP12.92□□□□□ -0.34
SPG11-217ENST00000559511 ZNF500O60304 480 aaPredicted RBP12.92□□□□□ -0.34
SPG11-217ENST00000559511 PTMAP06454 111 aaKnown RBP12.92□□□□□ -0.34
SPG11-217ENST00000559511 TRAPPC3LQ5T215 181 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 CCDC24Q8N4L8 307 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 MPNDQ8N594 471 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 C8orf76Q96K31 380 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 NAP1L5Q96NT1 182 aaPredicted RBP12.92□□□□□ -0.34
SPG11-217ENST00000559511 TACC3Q9Y6A5 838 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 GSG1L2A8MUP6 293 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 CPLX1O14810 134 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 PRKAB2O43741 272 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 RXRAP19793 462 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 RFC4P35249 363 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 CTDSPL2Q05D32 466 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 ATL3Q6DD88 541 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 TPTE2Q6XPS3 522 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 LCORLQ8N3X6 602 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 FBXO18Q8NFZ0 1043 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 ZNF396Q96N95 335 aaPredicted RBP12.92□□□□□ -0.34
SPG11-217ENST00000559511 NLRP3Q96P20 1036 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 NAPBQ9H115 298 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 GOLPH3LQ9H4A5 285 aa12.92□□□□□ -0.34
SPG11-217ENST00000559511 IQSEC3Q9UPP2 1182 aaPredicted RBP12.92□□□□□ -0.34
SPG11-217ENST00000559511 CCAR1Q8IX12 1150 aaKnown RBP12.91□□□□□ -0.34
SPG11-217ENST00000559511 FAM200AQ8TCP9 573 aa12.91□□□□□ -0.34
SPG11-217ENST00000559511 IGDCC4Q8TDY8 1250 aa12.91□□□□□ -0.34
SPG11-217ENST00000559511 MINPP1Q9UNW1 487 aa12.91□□□□□ -0.34
SPG11-217ENST00000559511 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.91□□□□□ -0.34
SPG11-217ENST00000559511 COL1A1P02452 1464 aaPredicted RBP12.91□□□□□ -0.34
SPG11-217ENST00000559511 ANO6Q4KMQ2 910 aa12.91□□□□□ -0.34
SPG11-217ENST00000559511 APOA5Q6Q788 366 aa12.91□□□□□ -0.34
SPG11-217ENST00000559511 LY9Q9HBG7 655 aa12.91□□□□□ -0.34
SPG11-217ENST00000559511 CACNA1SQ13698 1873 aa12.91□□□□□ -0.34
SPG11-217ENST00000559511 CDC27P30260 824 aa12.9□□□□□ -0.34
SPG11-217ENST00000559511 METAP2P50579 478 aaKnown RBP eCLIP12.9□□□□□ -0.34
SPG11-217ENST00000559511 PLCB2Q00722 1185 aa12.9□□□□□ -0.34
SPG11-217ENST00000559511 SNW1Q13573 536 aaKnown RBP12.9□□□□□ -0.34
SPG11-217ENST00000559511 UBE4AQ14139 1066 aa12.9□□□□□ -0.34
SPG11-217ENST00000559511 KRT27Q7Z3Y8 459 aa12.9□□□□□ -0.34
SPG11-217ENST00000559511 ADGRA1Q86SQ6 560 aa12.9□□□□□ -0.34
SPG11-217ENST00000559511 LUZP1Q86V48 1076 aa12.9□□□□□ -0.34
SPG11-217ENST00000559511 MIGA1Q8NAN2 632 aa12.9□□□□□ -0.34
SPG11-217ENST00000559511 TMEM87BQ96K49 555 aa12.9□□□□□ -0.34
SPG11-217ENST00000559511 AIFM3Q96NN9 605 aa12.9□□□□□ -0.34
SPG11-217ENST00000559511 ZNF804BA4D1E1 1349 aa12.9□□□□□ -0.34
SPG11-217ENST00000559511 PNPLA7Q6ZV29 1317 aa12.9□□□□□ -0.34
SPG11-217ENST00000559511 KIF28PB7ZC32 967 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 OFD1O75665 1012 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 POLR3DP05423 398 aaPredicted RBP12.89□□□□□ -0.35
SPG11-217ENST00000559511 GYG1P46976 350 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 ME1P48163 572 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 RPS8P62241 208 aaKnown RBP12.89□□□□□ -0.35
SPG11-217ENST00000559511 NFIXQ14938 502 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 MICU3Q86XE3 530 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 CCDC144CPQ8IYA2 1237 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 RTEL1Q9NZ71 1219 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 ZSWIM5Q9P217 1185 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 LRP2BPQ9P2M1 347 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 SLC4A4Q9Y6R1 1079 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 BAZ2AQ9UIF9 1905 aaKnown RBP12.89□□□□□ -0.35
SPG11-217ENST00000559511 CCDC88AQ3V6T2 1871 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 TRIM37O94972 964 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 TM4SF1P30408 202 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 ENGASEQ8NFI3 743 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 ZNF830Q96NB3 372 aaPredicted RBP12.89□□□□□ -0.35
SPG11-217ENST00000559511 MYL10Q9BUA6 226 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 CBX8Q9HC52 389 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 CLIC4Q9Y696 253 aa12.89□□□□□ -0.35
SPG11-217ENST00000559511 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.88□□□□□ -0.35
SPG11-217ENST00000559511 ADRA2BP18089 450 aa12.88□□□□□ -0.35
SPG11-217ENST00000559511 TMEM67Q5HYA8 995 aa12.88□□□□□ -0.35
SPG11-217ENST00000559511 AKNAD1Q5T1N1 836 aa12.88□□□□□ -0.35
SPG11-217ENST00000559511 SASS6Q6UVJ0 657 aa12.88□□□□□ -0.35
SPG11-217ENST00000559511 SGMS1Q86VZ5 419 aa12.88□□□□□ -0.35
SPG11-217ENST00000559511 PHKBQ93100 1093 aa12.88□□□□□ -0.35
SPG11-217ENST00000559511 FAM217BQ9NTX9 383 aaPredicted RBP12.88□□□□□ -0.35
SPG11-217ENST00000559511 PCDHA7Q9UN72 937 aa12.88□□□□□ -0.35
SPG11-217ENST00000559511 ZBTB43O43298 467 aa12.88□□□□□ -0.35
SPG11-217ENST00000559511 GNAT2P19087 354 aa12.88□□□□□ -0.35
SPG11-217ENST00000559511 TDO2P48775 406 aa12.88□□□□□ -0.35
SPG11-217ENST00000559511 KIF23Q02241 960 aaPredicted RBP12.88□□□□□ -0.35
SPG11-217ENST00000559511 NTRK3Q16288 839 aa12.88□□□□□ -0.35
SPG11-217ENST00000559511 SLC27A3Q5K4L6 730 aa12.88□□□□□ -0.35
SPG11-217ENST00000559511 MYSM1Q5VVJ2 828 aa12.88□□□□□ -0.35
SPG11-217ENST00000559511 NFXL1Q6ZNB6 911 aa12.88□□□□□ -0.35
SPG11-217ENST00000559511 FSIP1Q8NA03 581 aa12.88□□□□□ -0.35
SPG11-217ENST00000559511 LINC00301Q8NCQ3 95 aa12.88□□□□□ -0.35
SPG11-217ENST00000559511 DNAJC25Q9H1X3 360 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms