RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 NFICP08651 508 aa9.46□□□□□ -0.9
PRPF39-209ENST00000556353 GSTP1P09211 210 aaKnown RBP9.46□□□□□ -0.9
PRPF39-209ENST00000556353 LIG1P18858 919 aa9.46□□□□□ -0.9
PRPF39-209ENST00000556353 ATP2B2Q01814 1243 aa9.46□□□□□ -0.9
PRPF39-209ENST00000556353 ALG1LQ6GMV1 187 aa9.46□□□□□ -0.9
PRPF39-209ENST00000556353 OSBPL1AQ9BXW6 950 aa9.46□□□□□ -0.9
PRPF39-209ENST00000556353 SRCIN1Q9C0H9 1055 aa9.46□□□□□ -0.9
PRPF39-209ENST00000556353 CCDC86Q9H6F5 360 aaKnown RBP9.46□□□□□ -0.9
PRPF39-209ENST00000556353 FAM105AQ9NUU6 356 aa9.46□□□□□ -0.9
PRPF39-209ENST00000556353 PIM2Q9P1W9 311 aa9.46□□□□□ -0.9
PRPF39-209ENST00000556353 CPSF6Q16630 551 aaKnown RBP eCLIP9.45□□□□□ -0.9
PRPF39-209ENST00000556353 TBC1D32Q96NH3 1257 aa9.45□□□□□ -0.9
PRPF39-209ENST00000556353 GSX1Q9H4S2 264 aaPredicted RBP9.45□□□□□ -0.9
PRPF39-209ENST00000556353 ACSS3Q9H6R3 686 aa9.45□□□□□ -0.9
PRPF39-209ENST00000556353 KRT82Q9NSB4 513 aa9.45□□□□□ -0.9
PRPF39-209ENST00000556353 PRKAG2Q9UGJ0 569 aa9.45□□□□□ -0.9
PRPF39-209ENST00000556353 PPP1R9AQ9ULJ8 1098 aa9.45□□□□□ -0.9
PRPF39-209ENST00000556353 LEMD3Q9Y2U8 911 aa9.45□□□□□ -0.9
PRPF39-209ENST00000556353 SLFN14P0C7P3 912 aa9.44□□□□□ -0.9
PRPF39-209ENST00000556353 GSTT1P30711 240 aa9.44□□□□□ -0.9
PRPF39-209ENST00000556353 ZAR1Q86SH2 424 aa9.44□□□□□ -0.9
PRPF39-209ENST00000556353 SULF2Q8IWU5 870 aa9.44□□□□□ -0.9
PRPF39-209ENST00000556353 METTL22Q9BUU2 404 aaPredicted RBP9.44□□□□□ -0.9
PRPF39-209ENST00000556353 SEMA6CQ9H3T2 930 aa9.44□□□□□ -0.9
PRPF39-209ENST00000556353 GIPC1O14908 333 aa9.43□□□□□ -0.9
PRPF39-209ENST00000556353 C3orf58Q8NDZ4 430 aa9.43□□□□□ -0.9
PRPF39-209ENST00000556353 KCNB2Q92953 911 aa9.43□□□□□ -0.9
PRPF39-209ENST00000556353 SETDB2Q96T68 719 aa9.43□□□□□ -0.9
PRPF39-209ENST00000556353 WWC3Q9ULE0 1092 aa9.43□□□□□ -0.9
PRPF39-209ENST00000556353 TMPRSS2O15393 492 aa9.42□□□□□ -0.9
PRPF39-209ENST00000556353 SPINK2P20155 84 aa9.42□□□□□ -0.9
PRPF39-209ENST00000556353 ADMP35318 185 aa9.42□□□□□ -0.9
PRPF39-209ENST00000556353 ID3Q02535 119 aa9.42□□□□□ -0.9
PRPF39-209ENST00000556353 KIF4BQ2VIQ3 1234 aa9.42□□□□□ -0.9
PRPF39-209ENST00000556353 PDZD3Q86UT5 571 aa9.42□□□□□ -0.9
PRPF39-209ENST00000556353 DTX1Q86Y01 620 aa9.42□□□□□ -0.9
PRPF39-209ENST00000556353 WDR89Q96FK6 387 aaPredicted RBP9.42□□□□□ -0.9
PRPF39-209ENST00000556353 CRIM1Q9NZV1 1036 aa9.42□□□□□ -0.9
PRPF39-209ENST00000556353 SPG7Q9UQ90 795 aa9.42□□□□□ -0.9
PRPF39-209ENST00000556353 DAGLAQ9Y4D2 1042 aa9.42□□□□□ -0.9
PRPF39-209ENST00000556353 ZNF862O60290 1169 aa9.41□□□□□ -0.9
PRPF39-209ENST00000556353 NME2P22392 152 aa9.41□□□□□ -0.9
PRPF39-209ENST00000556353 ARNTP27540 789 aa9.41□□□□□ -0.9
PRPF39-209ENST00000556353 SHISA5Q8N114 240 aa9.41□□□□□ -0.9
PRPF39-209ENST00000556353 OSBPL7Q9BZF2 842 aa9.41□□□□□ -0.9
PRPF39-209ENST00000556353 ATXN3LQ9H3M9 355 aa9.41□□□□□ -0.9
PRPF39-209ENST00000556353 PIDD1Q9HB75 910 aa9.41□□□□□ -0.9
PRPF39-209ENST00000556353 P4HBP07237 508 aaKnown RBP9.4□□□□□ -0.9
PRPF39-209ENST00000556353 FOSL1P15407 271 aa9.4□□□□□ -0.9
PRPF39-209ENST00000556353 HOXA10P31260 410 aaPredicted RBP9.4□□□□□ -0.9
PRPF39-209ENST00000556353 STK35Q8TDR2 534 aa9.4□□□□□ -0.9
PRPF39-209ENST00000556353 EMILIN2Q9BXX0 1053 aa9.4□□□□□ -0.9
PRPF39-209ENST00000556353 CEP44Q9C0F1 390 aa9.4□□□□□ -0.9
PRPF39-209ENST00000556353 PPM1HQ9ULR3 514 aa9.4□□□□□ -0.9
PRPF39-209ENST00000556353 FAM170BA6NMN3 283 aa9.39□□□□□ -0.91
PRPF39-209ENST00000556353 LDHBP07195 334 aaKnown RBP9.39□□□□□ -0.91
PRPF39-209ENST00000556353 PDIA4P13667 645 aaKnown RBP9.39□□□□□ -0.91
PRPF39-209ENST00000556353 CYP27A1Q02318 531 aa9.39□□□□□ -0.91
PRPF39-209ENST00000556353 DUSP27Q5VZP5 1158 aa9.39□□□□□ -0.91
PRPF39-209ENST00000556353 TPTE2Q6XPS3 522 aa9.39□□□□□ -0.91
PRPF39-209ENST00000556353 AEBP1Q8IUX7 1158 aa9.39□□□□□ -0.91
PRPF39-209ENST00000556353 GATA6Q92908 595 aa9.39□□□□□ -0.91
PRPF39-209ENST00000556353 NECAB3Q96P71 396 aaPredicted RBP9.39□□□□□ -0.91
PRPF39-209ENST00000556353 FANCD2OSQ96PS1 177 aa9.39□□□□□ -0.91
PRPF39-209ENST00000556353 CBX8Q9HC52 389 aa9.39□□□□□ -0.91
PRPF39-209ENST00000556353 MAP1SQ66K74 1059 aaPredicted RBP9.38□□□□□ -0.91
PRPF39-209ENST00000556353 SAMM50Q9Y512 469 aa9.38□□□□□ -0.91
PRPF39-209ENST00000556353 PCDHGC5Q9Y5F6 944 aa9.38□□□□□ -0.91
PRPF39-209ENST00000556353 CYP26A1O43174 497 aa9.37□□□□□ -0.91
PRPF39-209ENST00000556353 DYNC1LI2O43237 492 aaPredicted RBP9.37□□□□□ -0.91
PRPF39-209ENST00000556353 SEZ6L2Q6UXD5 910 aa9.37□□□□□ -0.91
PRPF39-209ENST00000556353 SND1Q7KZF4 910 aaKnown RBP eCLIP9.37□□□□□ -0.91
PRPF39-209ENST00000556353 C12orf49Q9H741 205 aa9.37□□□□□ -0.91
PRPF39-209ENST00000556353 LGR6Q9HBX8 967 aa9.37□□□□□ -0.91
PRPF39-209ENST00000556353 C1GALT1Q9NS00 363 aa9.37□□□□□ -0.91
PRPF39-209ENST00000556353 FAM8A1Q9UBU6 413 aa9.37□□□□□ -0.91
PRPF39-209ENST00000556353 ENC1O14682 589 aa9.36□□□□□ -0.91
PRPF39-209ENST00000556353 FBXO24O75426 580 aa9.36□□□□□ -0.91
PRPF39-209ENST00000556353 WNT11O96014 354 aa9.36□□□□□ -0.91
PRPF39-209ENST00000556353 GP2P55259 537 aaKnown RBP9.36□□□□□ -0.91
PRPF39-209ENST00000556353 ACSBG1Q96GR2 724 aa9.36□□□□□ -0.91
PRPF39-209ENST00000556353 DISC1Q9NRI5 854 aa9.36□□□□□ -0.91
PRPF39-209ENST00000556353 ADAMTS4O75173 837 aa9.35□□□□□ -0.91
PRPF39-209ENST00000556353 ZNF252P-AS1Q0IIN9 211 aa9.35□□□□□ -0.91
PRPF39-209ENST00000556353 MSMPQ1L6U9 139 aa9.35□□□□□ -0.91
PRPF39-209ENST00000556353 ZNF765Q7L2R6 523 aa9.35□□□□□ -0.91
PRPF39-209ENST00000556353 SMYD4Q8IYR2 804 aaPredicted RBP9.35□□□□□ -0.91
PRPF39-209ENST00000556353 GPBAR1Q8TDU6 330 aa9.35□□□□□ -0.91
PRPF39-209ENST00000556353 ANKRD24Q8TF21 1146 aa9.35□□□□□ -0.91
PRPF39-209ENST00000556353 FRMD6Q96NE9 622 aa9.35□□□□□ -0.91
PRPF39-209ENST00000556353 RNGTTO60942 597 aaKnown RBP9.34□□□□□ -0.91
PRPF39-209ENST00000556353 USP17L7P0C7H9 530 aa9.34□□□□□ -0.91
PRPF39-209ENST00000556353 TTLL4Q14679 1199 aa9.34□□□□□ -0.91
PRPF39-209ENST00000556353 OAS3Q9Y6K5 1087 aaKnown RBP9.34□□□□□ -0.91
PRPF39-209ENST00000556353 PAGE1O75459 146 aa9.33□□□□□ -0.92
PRPF39-209ENST00000556353 HCLS1P14317 486 aaPredicted RBP9.33□□□□□ -0.92
PRPF39-209ENST00000556353 BMP6P22004 513 aa9.33□□□□□ -0.92
PRPF39-209ENST00000556353 FGD1P98174 961 aa9.33□□□□□ -0.92
PRPF39-209ENST00000556353 ZC3H12AQ5D1E8 599 aaKnown RBP9.33□□□□□ -0.92
PRPF39-209ENST00000556353 OGFOD3Q6PK18 319 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms