RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 LMNB2Q03252 620 aa9.1□□□□□ -0.95
LINC00643-204ENST00000555934 PTPN11Q06124 597 aaPredicted RBP9.1□□□□□ -0.95
LINC00643-204ENST00000555934 PDE3AQ14432 1141 aa9.1□□□□□ -0.95
LINC00643-204ENST00000555934 PDZD3Q86UT5 571 aa9.1□□□□□ -0.95
LINC00643-204ENST00000555934 KLHL23Q8NBE8 558 aa9.1□□□□□ -0.95
LINC00643-204ENST00000555934 MIR1-1HGQ9H1L0 117 aa9.1□□□□□ -0.95
LINC00643-204ENST00000555934 TM4SF5O14894 197 aa9.09□□□□□ -0.95
LINC00643-204ENST00000555934 TLR3O15455 904 aaKnown RBP9.09□□□□□ -0.95
LINC00643-204ENST00000555934 GARTP22102 1010 aa9.09□□□□□ -0.95
LINC00643-204ENST00000555934 CD68P34810 354 aaPredicted RBP9.09□□□□□ -0.95
LINC00643-204ENST00000555934 LRRC14Q15048 493 aa9.09□□□□□ -0.95
LINC00643-204ENST00000555934 DTWD1Q8N5C7 304 aa9.09□□□□□ -0.95
LINC00643-204ENST00000555934 UBASH3BQ8TF42 649 aa9.09□□□□□ -0.95
LINC00643-204ENST00000555934 EAF1Q96JC9 268 aaPredicted RBP9.09□□□□□ -0.95
LINC00643-204ENST00000555934 UBP1Q9NZI7 540 aa9.09□□□□□ -0.95
LINC00643-204ENST00000555934 PPP1R1BQ9UD71 204 aaPredicted RBP9.09□□□□□ -0.95
LINC00643-204ENST00000555934 CYP8B1Q9UNU6 501 aa9.09□□□□□ -0.95
LINC00643-204ENST00000555934 F13A1P00488 732 aa9.08□□□□□ -0.96
LINC00643-204ENST00000555934 DNAJA1P31689 397 aaKnown RBP9.08□□□□□ -0.96
LINC00643-204ENST00000555934 RAC1P63000 192 aa9.08□□□□□ -0.96
LINC00643-204ENST00000555934 ZNF252P-AS1Q0IIN9 211 aa9.08□□□□□ -0.96
LINC00643-204ENST00000555934 GNL2Q13823 731 aaKnown RBP9.08□□□□□ -0.96
LINC00643-204ENST00000555934 PRRT3Q5FWE3 981 aa9.08□□□□□ -0.96
LINC00643-204ENST00000555934 FMR1NBQ8N0W7 255 aaPredicted RBP9.08□□□□□ -0.96
LINC00643-204ENST00000555934 FBXO27Q8NI29 283 aa9.08□□□□□ -0.96
LINC00643-204ENST00000555934 GPRASP2Q96D09 838 aa9.08□□□□□ -0.96
LINC00643-204ENST00000555934 ACSBG1Q96GR2 724 aa9.08□□□□□ -0.96
LINC00643-204ENST00000555934 NRSN2Q9GZP1 204 aa9.08□□□□□ -0.96
LINC00643-204ENST00000555934 CCDC86Q9H6F5 360 aaKnown RBP9.08□□□□□ -0.96
LINC00643-204ENST00000555934 SUPT16HQ9Y5B9 1047 aaKnown RBP9.08□□□□□ -0.96
LINC00643-204ENST00000555934 IGSF3O75054 1194 aa9.07□□□□□ -0.96
LINC00643-204ENST00000555934 LIG1P18858 919 aa9.07□□□□□ -0.96
LINC00643-204ENST00000555934 TRIM28Q13263 835 aaKnown RBP9.07□□□□□ -0.96
LINC00643-204ENST00000555934 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.07□□□□□ -0.96
LINC00643-204ENST00000555934 MAP4K3Q8IVH8 894 aa9.07□□□□□ -0.96
LINC00643-204ENST00000555934 TRIM42Q8IWZ5 723 aa9.07□□□□□ -0.96
LINC00643-204ENST00000555934 GPBAR1Q8TDU6 330 aa9.07□□□□□ -0.96
LINC00643-204ENST00000555934 GAL3ST3Q96A11 431 aa9.07□□□□□ -0.96
LINC00643-204ENST00000555934 LOC100289279A0A1B0GTE1 492 aa9.06□□□□□ -0.96
LINC00643-204ENST00000555934 WISP1O95388 367 aa9.06□□□□□ -0.96
LINC00643-204ENST00000555934 DLGAP3O95886 979 aa9.06□□□□□ -0.96
LINC00643-204ENST00000555934 SPATA31C1P0DKV0 1188 aa9.06□□□□□ -0.96
LINC00643-204ENST00000555934 CRKP46108 304 aa9.06□□□□□ -0.96
LINC00643-204ENST00000555934 CDK8P49336 464 aa9.06□□□□□ -0.96
LINC00643-204ENST00000555934 DUOXA2Q1HG44 320 aa9.06□□□□□ -0.96
LINC00643-204ENST00000555934 ALYREFQ86V81 257 aaKnown RBP9.06□□□□□ -0.96
LINC00643-204ENST00000555934 FBXO11Q86XK2 927 aa9.06□□□□□ -0.96
LINC00643-204ENST00000555934 WDR89Q96FK6 387 aaPredicted RBP9.06□□□□□ -0.96
LINC00643-204ENST00000555934 PCDHA4Q9UN74 947 aa9.06□□□□□ -0.96
LINC00643-204ENST00000555934 DLL1O00548 723 aa9.04□□□□□ -0.96
LINC00643-204ENST00000555934 ZNF862O60290 1169 aa9.04□□□□□ -0.96
LINC00643-204ENST00000555934 GREM1O60565 184 aa9.04□□□□□ -0.96
LINC00643-204ENST00000555934 TRIM37O94972 964 aa9.04□□□□□ -0.96
LINC00643-204ENST00000555934 ELNP15502 786 aa9.04□□□□□ -0.96
LINC00643-204ENST00000555934 GJA8P48165 433 aa9.04□□□□□ -0.96
LINC00643-204ENST00000555934 APOBRQ0VD83 1088 aa9.04□□□□□ -0.96
LINC00643-204ENST00000555934 GRIK4Q16099 956 aa9.04□□□□□ -0.96
LINC00643-204ENST00000555934 SEZ6Q53EL9 994 aa9.04□□□□□ -0.96
LINC00643-204ENST00000555934 FAM196AQ6ZSG2 479 aa9.04□□□□□ -0.96
LINC00643-204ENST00000555934 SREK1Q8WXA9 508 aaKnown RBP9.04□□□□□ -0.96
LINC00643-204ENST00000555934 TANGO6Q9C0B7 1094 aa9.04□□□□□ -0.96
LINC00643-204ENST00000555934 SHISA2Q6UWI4 295 aa9.03□□□□□ -0.96
LINC00643-204ENST00000555934 ACAD11Q709F0 780 aa9.03□□□□□ -0.96
LINC00643-204ENST00000555934 GATAD2BQ8WXI9 593 aa9.03□□□□□ -0.96
LINC00643-204ENST00000555934 NKD1Q969G9 470 aa9.03□□□□□ -0.96
LINC00643-204ENST00000555934 DCAF5Q96JK2 942 aa9.03□□□□□ -0.96
LINC00643-204ENST00000555934 NT5C1AQ9BXI3 368 aa9.03□□□□□ -0.96
LINC00643-204ENST00000555934 KCNQ5Q9NR82 932 aa9.03□□□□□ -0.96
LINC00643-204ENST00000555934 PRKAG2Q9UGJ0 569 aa9.03□□□□□ -0.96
LINC00643-204ENST00000555934 EFR3BQ9Y2G0 817 aa9.03□□□□□ -0.96
LINC00643-204ENST00000555934 CSADQ9Y600 493 aa9.03□□□□□ -0.96
LINC00643-204ENST00000555934 FAM221AA4D161 298 aa9.02□□□□□ -0.97
LINC00643-204ENST00000555934 BPNT1O95861 308 aa9.02□□□□□ -0.97
LINC00643-204ENST00000555934 MCM4P33991 863 aa9.02□□□□□ -0.97
LINC00643-204ENST00000555934 ARID5AQ03989 594 aa9.02□□□□□ -0.97
LINC00643-204ENST00000555934 VPS37DQ86XT2 251 aa9.02□□□□□ -0.97
LINC00643-204ENST00000555934 SLC43A3Q8NBI5 491 aa9.02□□□□□ -0.97
LINC00643-204ENST00000555934 RAD18Q9NS91 495 aa9.02□□□□□ -0.97
LINC00643-204ENST00000555934 GINM1Q9NU53 330 aa9.02□□□□□ -0.97
LINC00643-204ENST00000555934 DCDC2CA8MYV0 355 aa9.01□□□□□ -0.97
LINC00643-204ENST00000555934 EIF4EBP3O60516 100 aaPredicted RBP9.01□□□□□ -0.97
LINC00643-204ENST00000555934 ITGB2P05107 769 aa9.01□□□□□ -0.97
LINC00643-204ENST00000555934 NASPP49321 788 aaPredicted RBP9.01□□□□□ -0.97
LINC00643-204ENST00000555934 INPP5AQ14642 412 aa9.01□□□□□ -0.97
LINC00643-204ENST00000555934 AGGF1Q8N302 714 aaeCLIP9.01□□□□□ -0.97
LINC00643-204ENST00000555934 DCAF11Q8TEB1 546 aa9.01□□□□□ -0.97
LINC00643-204ENST00000555934 RUSC1Q9BVN2 902 aa9.01□□□□□ -0.97
LINC00643-204ENST00000555934 GRIN3BO60391 1043 aa9□□□□□ -0.97
LINC00643-204ENST00000555934 CILPO75339 1184 aa9□□□□□ -0.97
LINC00643-204ENST00000555934 SELPP16109 830 aa9□□□□□ -0.97
LINC00643-204ENST00000555934 ATF4P18848 351 aaPredicted RBP9□□□□□ -0.97
LINC00643-204ENST00000555934 AKAP4Q5JQC9 854 aa9□□□□□ -0.97
LINC00643-204ENST00000555934 WIPI1Q5MNZ9 446 aaPredicted RBP9□□□□□ -0.97
LINC00643-204ENST00000555934 LRFN4Q6PJG9 635 aa9□□□□□ -0.97
LINC00643-204ENST00000555934 CCDC84Q86UT8 332 aaPredicted RBP9□□□□□ -0.97
LINC00643-204ENST00000555934 DRC1Q96MC2 740 aa9□□□□□ -0.97
LINC00643-204ENST00000555934 BUD13Q9BRD0 619 aaKnown RBP eCLIP9□□□□□ -0.97
LINC00643-204ENST00000555934 WDR18Q9BV38 432 aa9□□□□□ -0.97
LINC00643-204ENST00000555934 KRT82Q9NSB4 513 aa9□□□□□ -0.97
LINC00643-204ENST00000555934 KRBA1A5PL33 1030 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms