RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 VEZTQ9HBM0 779 aa13.18□□□□□ -0.3
SHMT2-218ENST00000555213 CLRN2A0PK11 232 aa13.17□□□□□ -0.3
SHMT2-218ENST00000555213 PLCG2P16885 1265 aa13.17□□□□□ -0.3
SHMT2-218ENST00000555213 CYP7A1P22680 504 aa13.17□□□□□ -0.3
SHMT2-218ENST00000555213 BTDP43251 543 aa13.17□□□□□ -0.3
SHMT2-218ENST00000555213 TNNI2P48788 182 aa13.17□□□□□ -0.3
SHMT2-218ENST00000555213 SPDYE2Q495Y8 402 aa13.17□□□□□ -0.3
SHMT2-218ENST00000555213 SLC9C2Q5TAH2 1124 aa13.17□□□□□ -0.3
SHMT2-218ENST00000555213 CDC37L1Q7L3B6 337 aa13.17□□□□□ -0.3
SHMT2-218ENST00000555213 CNTROBQ8N137 903 aa13.17□□□□□ -0.3
SHMT2-218ENST00000555213 MAGEB6Q8N7X4 407 aa13.17□□□□□ -0.3
SHMT2-218ENST00000555213 KBTBD3Q8NAB2 608 aa13.17□□□□□ -0.3
SHMT2-218ENST00000555213 FAM163AQ96GL9 167 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-218ENST00000555213 PRMT6Q96LA8 375 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-218ENST00000555213 FSD1Q9BTV5 496 aa13.17□□□□□ -0.3
SHMT2-218ENST00000555213 PGAP2Q9UHJ9 254 aa13.17□□□□□ -0.3
SHMT2-218ENST00000555213 MAP4K4O95819 1239 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-218ENST00000555213 ZFYP08048 801 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-218ENST00000555213 PDE6AP16499 860 aa13.16□□□□□ -0.3
SHMT2-218ENST00000555213 APOBEC3HQ6NTF7 200 aaKnown RBP13.16□□□□□ -0.3
SHMT2-218ENST00000555213 EVI5LQ96CN4 794 aa13.16□□□□□ -0.3
SHMT2-218ENST00000555213 EDC3Q96F86 508 aaKnown RBP13.16□□□□□ -0.3
SHMT2-218ENST00000555213 TDRD3Q9H7E2 651 aaKnown RBP13.16□□□□□ -0.3
SHMT2-218ENST00000555213 ZNF70Q9UC06 446 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-218ENST00000555213 PPP2R3BQ9Y5P8 575 aa13.16□□□□□ -0.3
SHMT2-218ENST00000555213 DOCK2Q92608 1830 aa13.16□□□□□ -0.3
SHMT2-218ENST00000555213 ASTN2O75129 1339 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-218ENST00000555213 GPR75-ASB3A0A0A6YYF3 556 aa13.15□□□□□ -0.3
SHMT2-218ENST00000555213 TRIM6-TRIM34B2RNG4 842 aa13.15□□□□□ -0.3
SHMT2-218ENST00000555213 USP40Q9NVE5 1235 aa13.15□□□□□ -0.3
SHMT2-218ENST00000555213 PCDHAC2Q9Y5I4 1007 aa13.15□□□□□ -0.3
SHMT2-218ENST00000555213 ZNF532Q9HCE3 1301 aa13.14□□□□□ -0.31
SHMT2-218ENST00000555213 NF2P35240 595 aa13.14□□□□□ -0.31
SHMT2-218ENST00000555213 ADD2P35612 726 aa13.14□□□□□ -0.31
SHMT2-218ENST00000555213 UBE3CQ15386 1083 aa13.14□□□□□ -0.31
SHMT2-218ENST00000555213 FKBP1CQ5VVH2 108 aa13.14□□□□□ -0.31
SHMT2-218ENST00000555213 CDC42EP5Q6NZY7 148 aa13.14□□□□□ -0.31
SHMT2-218ENST00000555213 USP48Q86UV5 1035 aa13.14□□□□□ -0.31
SHMT2-218ENST00000555213 ZNF384Q8TF68 577 aa13.14□□□□□ -0.31
SHMT2-218ENST00000555213 GLIS2Q9BZE0 524 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-218ENST00000555213 RFX7Q2KHR2 1363 aa13.14□□□□□ -0.31
SHMT2-218ENST00000555213 ECM29Q5VYK3 1845 aa13.13□□□□□ -0.31
SHMT2-218ENST00000555213 MAGEB6P1A0A0J9YX57 407 aa13.13□□□□□ -0.31
SHMT2-218ENST00000555213 TCP10L2B9ZVM9 353 aa13.13□□□□□ -0.31
SHMT2-218ENST00000555213 ADM5C9JUS6 153 aa13.13□□□□□ -0.31
SHMT2-218ENST00000555213 TICAM2Q86XR7 235 aa13.13□□□□□ -0.31
SHMT2-218ENST00000555213 TEX11Q8IYF3 940 aa13.13□□□□□ -0.31
SHMT2-218ENST00000555213 MIGA1Q8NAN2 632 aa13.13□□□□□ -0.31
SHMT2-218ENST00000555213 RILPL2Q969X0 211 aa13.13□□□□□ -0.31
SHMT2-218ENST00000555213 DEFB129Q9H1M3 183 aa13.13□□□□□ -0.31
SHMT2-218ENST00000555213 AATFQ9NY61 560 aaKnown RBP eCLIP13.13□□□□□ -0.31
SHMT2-218ENST00000555213 MYH2Q9UKX2 1941 aa13.13□□□□□ -0.31
SHMT2-218ENST00000555213 RPAP1Q9BWH6 1393 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-218ENST00000555213 RNF113AO15541 343 aaKnown RBP13.12□□□□□ -0.31
SHMT2-218ENST00000555213 CACNB3P54284 484 aa13.12□□□□□ -0.31
SHMT2-218ENST00000555213 PPP4CP60510 307 aa13.12□□□□□ -0.31
SHMT2-218ENST00000555213 ADGRA1Q86SQ6 560 aa13.12□□□□□ -0.31
SHMT2-218ENST00000555213 FAM83AQ86UY5 434 aa13.12□□□□□ -0.31
SHMT2-218ENST00000555213 AIDAQ96BJ3 306 aa13.12□□□□□ -0.31
SHMT2-218ENST00000555213 HOOK2Q96ED9 719 aa13.12□□□□□ -0.31
SHMT2-218ENST00000555213 TCRBV5S4A2TA0A5A2 114 aa13.11□□□□□ -0.31
SHMT2-218ENST00000555213 HIP1O00291 1037 aa13.11□□□□□ -0.31
SHMT2-218ENST00000555213 TRAF5O00463 557 aa13.11□□□□□ -0.31
SHMT2-218ENST00000555213 ENTPD3O75355 529 aa13.11□□□□□ -0.31
SHMT2-218ENST00000555213 CDC45O75419 566 aa13.11□□□□□ -0.31
SHMT2-218ENST00000555213 ITGBL1O95965 494 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-218ENST00000555213 PICALMQ13492 652 aa13.11□□□□□ -0.31
SHMT2-218ENST00000555213 RASA3Q14644 834 aa13.11□□□□□ -0.31
SHMT2-218ENST00000555213 SUPT20HL1Q3ZLR7 823 aa13.11□□□□□ -0.31
SHMT2-218ENST00000555213 APPBP2Q92624 585 aa13.11□□□□□ -0.31
SHMT2-218ENST00000555213 CDCA5Q96FF9 252 aa13.11□□□□□ -0.31
SHMT2-218ENST00000555213 DDRGK1Q96HY6 314 aa13.11□□□□□ -0.31
SHMT2-218ENST00000555213 IDI2Q9BXS1 227 aa13.11□□□□□ -0.31
SHMT2-218ENST00000555213 CRNKL1Q9BZJ0 848 aaKnown RBP13.11□□□□□ -0.31
SHMT2-218ENST00000555213 ZNF408Q9H9D4 720 aa13.11□□□□□ -0.31
SHMT2-218ENST00000555213 PASKQ96RG2 1323 aa13.11□□□□□ -0.31
SHMT2-218ENST00000555213 NPM3O75607 178 aaKnown RBP13.1□□□□□ -0.31
SHMT2-218ENST00000555213 WDHD1O75717 1129 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-218ENST00000555213 MBD4O95243 580 aa13.1□□□□□ -0.31
SHMT2-218ENST00000555213 CHMLP26374 656 aa13.1□□□□□ -0.31
SHMT2-218ENST00000555213 USP5P45974 858 aa13.1□□□□□ -0.31
SHMT2-218ENST00000555213 RHBDL3P58872 404 aa13.1□□□□□ -0.31
SHMT2-218ENST00000555213 SH3RF3Q8TEJ3 882 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-218ENST00000555213 FAM151AQ8WW52 585 aa13.1□□□□□ -0.31
SHMT2-218ENST00000555213 DIAPH3Q9NSV4 1193 aa13.1□□□□□ -0.31
SHMT2-218ENST00000555213 CELF2O95319 508 aaKnown RBP13.09□□□□□ -0.31
SHMT2-218ENST00000555213 APLP1P51693 650 aa13.09□□□□□ -0.31
SHMT2-218ENST00000555213 TCP10Q12799 353 aa13.09□□□□□ -0.31
SHMT2-218ENST00000555213 NFIAQ12857 509 aa13.09□□□□□ -0.31
SHMT2-218ENST00000555213 ZSCAN29Q8IWY8 852 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-218ENST00000555213 RIOK1Q9BRS2 568 aaKnown RBP13.09□□□□□ -0.31
SHMT2-218ENST00000555213 TMEM39BQ9GZU3 492 aa13.09□□□□□ -0.31
SHMT2-218ENST00000555213 SCAF8Q9UPN6 1271 aaKnown RBP13.09□□□□□ -0.31
SHMT2-218ENST00000555213 MYH7P12883 1935 aa13.09□□□□□ -0.31
SHMT2-218ENST00000555213 COL2A1P02458 1487 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-218ENST00000555213 CNTNAP1P78357 1384 aa13.08□□□□□ -0.31
SHMT2-218ENST00000555213 MYO5AQ9Y4I1 1855 aaKnown RBP13.08□□□□□ -0.32
SHMT2-218ENST00000555213 GNAT2P19087 354 aa13.08□□□□□ -0.32
SHMT2-218ENST00000555213 DYNLL1P63167 89 aaKnown RBP13.08□□□□□ -0.32
SHMT2-218ENST00000555213 FKBP1BP68106 108 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms