RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 PTPAQ15257 358 aa20.21■□□□□ 0.83
SYNE3-202ENST00000553340 KRT40Q6A162 431 aa20.21■□□□□ 0.83
SYNE3-202ENST00000553340 AIFM3Q96NN9 605 aa20.21■□□□□ 0.83
SYNE3-202ENST00000553340 ZBTB3Q9H5J0 574 aa20.21■□□□□ 0.83
SYNE3-202ENST00000553340 TJP1Q07157 1748 aa20.2■□□□□ 0.83
SYNE3-202ENST00000553340 DDX60Q8IY21 1712 aaKnown RBP20.2■□□□□ 0.82
SYNE3-202ENST00000553340 ARHGAP6O43182 974 aa20.2■□□□□ 0.82
SYNE3-202ENST00000553340 TADA3O75528 432 aa20.2■□□□□ 0.82
SYNE3-202ENST00000553340 HSP90AB3PQ58FF7 597 aa20.2■□□□□ 0.82
SYNE3-202ENST00000553340 RESP18Q5W5W9 173 aa20.2■□□□□ 0.82
SYNE3-202ENST00000553340 MST1RQ04912 1400 aa20.2■□□□□ 0.82
SYNE3-202ENST00000553340 C4AP0C0L4 1744 aa20.2■□□□□ 0.82
SYNE3-202ENST00000553340 C4BP0C0L5 1744 aa20.2■□□□□ 0.82
SYNE3-202ENST00000553340 ERICH4A6NGS2 130 aa20.2■□□□□ 0.82
SYNE3-202ENST00000553340 ZAP70P43403 619 aa20.2■□□□□ 0.82
SYNE3-202ENST00000553340 CCDC102BQ68D86 513 aa20.2■□□□□ 0.82
SYNE3-202ENST00000553340 FANCLQ9NW38 375 aa20.2■□□□□ 0.82
SYNE3-202ENST00000553340 FBXO3Q9UK99 471 aa20.2■□□□□ 0.82
SYNE3-202ENST00000553340 PLA2G4AP47712 749 aa20.19■□□□□ 0.82
SYNE3-202ENST00000553340 CARD6Q9BX69 1037 aa20.19■□□□□ 0.82
SYNE3-202ENST00000553340 PARP3Q9Y6F1 533 aa20.19■□□□□ 0.82
SYNE3-202ENST00000553340 GLI3P10071 1580 aa20.19■□□□□ 0.82
SYNE3-202ENST00000553340 CUTAO60888 179 aa20.19■□□□□ 0.82
SYNE3-202ENST00000553340 SCARF1Q14162 830 aa20.19■□□□□ 0.82
SYNE3-202ENST00000553340 METTL16Q86W50 562 aaKnown RBP20.19■□□□□ 0.82
SYNE3-202ENST00000553340 CNNM3Q8NE01 707 aa20.19■□□□□ 0.82
SYNE3-202ENST00000553340 MPHOSPH8Q99549 860 aa20.19■□□□□ 0.82
SYNE3-202ENST00000553340 MAP3K14Q99558 947 aa20.19■□□□□ 0.82
SYNE3-202ENST00000553340 NUP188Q5SRE5 1749 aa20.18■□□□□ 0.82
SYNE3-202ENST00000553340 ABCC12Q96J65 1359 aa20.18■□□□□ 0.82
SYNE3-202ENST00000553340 GOLGA6L9A6NEM1 432 aa20.18■□□□□ 0.82
SYNE3-202ENST00000553340 TMEM232C9JQI7 657 aa20.18■□□□□ 0.82
SYNE3-202ENST00000553340 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.18■□□□□ 0.82
SYNE3-202ENST00000553340 PPP2R2CQ9Y2T4 447 aa20.18■□□□□ 0.82
SYNE3-202ENST00000553340 FANCGO15287 622 aa20.18■□□□□ 0.82
SYNE3-202ENST00000553340 KRBA2Q6ZNG9 492 aa20.18■□□□□ 0.82
SYNE3-202ENST00000553340 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.18■□□□□ 0.82
SYNE3-202ENST00000553340 C19orf44Q9H6X5 657 aa20.18■□□□□ 0.82
SYNE3-202ENST00000553340 CALCOCO1Q9P1Z2 691 aa20.18■□□□□ 0.82
SYNE3-202ENST00000553340 KCNH3Q9ULD8 1083 aa20.18■□□□□ 0.82
SYNE3-202ENST00000553340 VWA3AA6NCI4 1184 aa20.17■□□□□ 0.82
SYNE3-202ENST00000553340 CYP2C19P33261 490 aa20.17■□□□□ 0.82
SYNE3-202ENST00000553340 GOLGA8FQ08AF8 430 aa20.17■□□□□ 0.82
SYNE3-202ENST00000553340 GOLGA8DPQ0D2H9 430 aa20.17■□□□□ 0.82
SYNE3-202ENST00000553340 TRIM29Q14134 588 aa20.17■□□□□ 0.82
SYNE3-202ENST00000553340 LONRF3Q496Y0 759 aa20.17■□□□□ 0.82
SYNE3-202ENST00000553340 CLIC6Q96NY7 704 aa20.17■□□□□ 0.82
SYNE3-202ENST00000553340 PCDHA5Q9Y5H7 936 aa20.17■□□□□ 0.82
SYNE3-202ENST00000553340 ATP8B1O43520 1251 aa20.17■□□□□ 0.82
SYNE3-202ENST00000553340 A1BGP04217 495 aa20.17■□□□□ 0.82
SYNE3-202ENST00000553340 TMEM139Q8IV31 216 aa20.17■□□□□ 0.82
SYNE3-202ENST00000553340 HOOK1Q9UJC3 728 aaKnown RBP20.17■□□□□ 0.82
SYNE3-202ENST00000553340 TAOK2Q9UL54 1235 aa20.17■□□□□ 0.82
SYNE3-202ENST00000553340 BAG1Q99933 345 aaPredicted RBP20.16■□□□□ 0.82
SYNE3-202ENST00000553340 SH2B2O14492 632 aaPredicted RBP20.16■□□□□ 0.82
SYNE3-202ENST00000553340 APOA5Q6Q788 366 aa20.16■□□□□ 0.82
SYNE3-202ENST00000553340 FOXP4Q8IVH2 680 aaPredicted RBP20.16■□□□□ 0.82
SYNE3-202ENST00000553340 FAM177A1Q8N128 213 aaPredicted RBP20.16■□□□□ 0.82
SYNE3-202ENST00000553340 PHKBQ93100 1093 aa20.16■□□□□ 0.82
SYNE3-202ENST00000553340 RXRAP19793 462 aa20.15■□□□□ 0.82
SYNE3-202ENST00000553340 CASQ1P31415 396 aa20.15■□□□□ 0.82
SYNE3-202ENST00000553340 TAF7LQ5H9L4 462 aa20.15■□□□□ 0.82
SYNE3-202ENST00000553340 TEX35Q5T0J7 233 aa20.15■□□□□ 0.82
SYNE3-202ENST00000553340 CYB5R4Q7L1T6 521 aa20.15■□□□□ 0.82
SYNE3-202ENST00000553340 NBPF3Q9H094 633 aa20.15■□□□□ 0.82
SYNE3-202ENST00000553340 PKD1L3Q7Z443 1732 aa20.15■□□□□ 0.82
SYNE3-202ENST00000553340 ALS2Q96Q42 1657 aa20.15■□□□□ 0.82
SYNE3-202ENST00000553340 C1orf167Q5SNV9 1468 aa20.15■□□□□ 0.82
SYNE3-202ENST00000553340 IARSP41252 1262 aaKnown RBP20.15■□□□□ 0.82
SYNE3-202ENST00000553340 PI16Q6UXB8 463 aa20.15■□□□□ 0.82
SYNE3-202ENST00000553340 ELOA2Q8IYF1 753 aaPredicted RBP20.15■□□□□ 0.82
SYNE3-202ENST00000553340 INTS13Q9NVM9 706 aa20.15■□□□□ 0.82
SYNE3-202ENST00000553340 STX10O60499 249 aa20.14■□□□□ 0.82
SYNE3-202ENST00000553340 CDC27P30260 824 aa20.14■□□□□ 0.82
SYNE3-202ENST00000553340 GNG11P61952 73 aa20.14■□□□□ 0.82
SYNE3-202ENST00000553340 TBX2Q13207 712 aaPredicted RBP20.14■□□□□ 0.82
SYNE3-202ENST00000553340 PTPN21Q16825 1174 aa20.14■□□□□ 0.82
SYNE3-202ENST00000553340 MICU3Q86XE3 530 aa20.14■□□□□ 0.82
SYNE3-202ENST00000553340 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.14■□□□□ 0.82
SYNE3-202ENST00000553340 DENND2AQ9ULE3 1009 aa20.14■□□□□ 0.82
SYNE3-202ENST00000553340 TBC1D10CQ8IV04 446 aa20.14■□□□□ 0.81
SYNE3-202ENST00000553340 PDILTQ8N807 584 aa20.14■□□□□ 0.81
SYNE3-202ENST00000553340 KRI1Q8N9T8 703 aaKnown RBP20.14■□□□□ 0.81
SYNE3-202ENST00000553340 TMEM87BQ96K49 555 aa20.14■□□□□ 0.81
SYNE3-202ENST00000553340 ZBTB43O43298 467 aa20.13■□□□□ 0.81
SYNE3-202ENST00000553340 MAP3K9P80192 1104 aa20.13■□□□□ 0.81
SYNE3-202ENST00000553340 PDE4BQ07343 736 aa20.13■□□□□ 0.81
SYNE3-202ENST00000553340 GPR161Q8N6U8 529 aaKnown RBP20.13■□□□□ 0.81
SYNE3-202ENST00000553340 MYH7P12883 1935 aa20.13■□□□□ 0.81
SYNE3-202ENST00000553340 APPP05067 770 aa20.13■□□□□ 0.81
SYNE3-202ENST00000553340 CDK11BP21127 795 aaKnown RBP20.13■□□□□ 0.81
SYNE3-202ENST00000553340 BMP6P22004 513 aa20.13■□□□□ 0.81
SYNE3-202ENST00000553340 ADD2P35612 726 aa20.12■□□□□ 0.81
SYNE3-202ENST00000553340 SPECC1LQ69YQ0 1117 aa20.12■□□□□ 0.81
SYNE3-202ENST00000553340 NFXL1Q6ZNB6 911 aa20.12■□□□□ 0.81
SYNE3-202ENST00000553340 ISCA1Q9BUE6 129 aa20.12■□□□□ 0.81
SYNE3-202ENST00000553340 PODXL2Q9NZ53 605 aa20.12■□□□□ 0.81
SYNE3-202ENST00000553340 ZKSCAN7Q9P0L1 754 aaPredicted RBP20.12■□□□□ 0.81
SYNE3-202ENST00000553340 DACH1Q9UI36 760 aa20.12■□□□□ 0.81
SYNE3-202ENST00000553340 COL18A1P39060 1754 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms