RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	ZCRB1	Q8TBF4	217 aa	Known RBP	5.65	□□□□□ -1.5
USP44-208	ENST00000552440	RUSC1	Q9BVN2	902 aa		5.65	□□□□□ -1.5
USP44-208	ENST00000552440	UBA5	Q9GZZ9	404 aa		5.65	□□□□□ -1.5
USP44-208	ENST00000552440	CHPF2	Q9P2E5	772 aa		5.65	□□□□□ -1.5
USP44-208	ENST00000552440	GAS2	O43903	313 aa	Known RBP	5.64	□□□□□ -1.51
USP44-208	ENST00000552440	EDN3	P14138	238 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	EPHA1	P21709	976 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	DAB2	P98082	770 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	TXNDC11	Q6PKC3	985 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	NT5DC4	Q86YG4	428 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	TRIM42	Q8IWZ5	723 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	TMEM87A	Q8NBN3	555 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	ALKBH8	Q96BT7	664 aa	Known RBP	5.64	□□□□□ -1.51
USP44-208	ENST00000552440	KLHDC7B	Q96G42	594 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	CARD10	Q9BWT7	1032 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	KCNF1	Q9H3M0	494 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	SH2B1	Q9NRF2	756 aa	Predicted RBP	5.64	□□□□□ -1.51
USP44-208	ENST00000552440	TERF2IP	Q9NYB0	399 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	LAS1L	Q9Y4W2	734 aa	Known RBP	5.64	□□□□□ -1.51
USP44-208	ENST00000552440	WISP1	O95388	367 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	WNT11	O96014	354 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	BMP3	P12645	472 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	CDC25B	P30305	580 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	GP2	P55259	537 aa	Known RBP	5.64	□□□□□ -1.51
USP44-208	ENST00000552440	AAMP	Q13685	434 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	BEND4	Q6ZU67	534 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	TMEM102	Q8N9M5	508 aa	Predicted RBP	5.64	□□□□□ -1.51
USP44-208	ENST00000552440	SGSM3	Q96HU1	749 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	CCDC136	Q96JN2	1154 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	ZSWIM4	Q9H7M6	989 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	ZFYVE1	Q9HBF4	777 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	CYP4F12	Q9HCS2	524 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	ATG3	Q9NT62	314 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	KCNK4	Q9NYG8	393 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	WWC3	Q9ULE0	1092 aa		5.64	□□□□□ -1.51
USP44-208	ENST00000552440	U2SURP	O15042	1029 aa	Known RBP	5.63	□□□□□ -1.51
USP44-208	ENST00000552440	ZBTB39	O15060	712 aa		5.63	□□□□□ -1.51
USP44-208	ENST00000552440	SORBS3	O60504	671 aa		5.63	□□□□□ -1.51
USP44-208	ENST00000552440	TGFB1	P01137	390 aa		5.63	□□□□□ -1.51
USP44-208	ENST00000552440	FANCC	Q00597	558 aa		5.63	□□□□□ -1.51
USP44-208	ENST00000552440	PDE3B	Q13370	1112 aa		5.63	□□□□□ -1.51
USP44-208	ENST00000552440	FAM50A	Q14320	339 aa	Known RBP	5.63	□□□□□ -1.51
USP44-208	ENST00000552440	FAM26D	Q5JW98	314 aa		5.63	□□□□□ -1.51
USP44-208	ENST00000552440	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	5.63	□□□□□ -1.51
USP44-208	ENST00000552440	DTX1	Q86Y01	620 aa		5.63	□□□□□ -1.51
USP44-208	ENST00000552440	PMFBP1	Q8TBY8	1022 aa		5.63	□□□□□ -1.51
USP44-208	ENST00000552440	BSND	Q8WZ55	320 aa		5.63	□□□□□ -1.51
USP44-208	ENST00000552440	PMM1	Q92871	262 aa		5.63	□□□□□ -1.51
USP44-208	ENST00000552440	FMNL2	Q96PY5	1086 aa		5.63	□□□□□ -1.51
USP44-208	ENST00000552440	YIPF2	Q9BWQ6	316 aa		5.63	□□□□□ -1.51
USP44-208	ENST00000552440	TGIF2	Q9GZN2	237 aa		5.63	□□□□□ -1.51
USP44-208	ENST00000552440	SOX17	Q9H6I2	414 aa	Predicted RBP	5.63	□□□□□ -1.51
USP44-208	ENST00000552440	MRS2	Q9HD23	443 aa		5.63	□□□□□ -1.51
USP44-208	ENST00000552440	PRDM10	Q9NQV6	1147 aa		5.63	□□□□□ -1.51
USP44-208	ENST00000552440	DZANK1	Q9NVP4	752 aa		5.63	□□□□□ -1.51
USP44-208	ENST00000552440	TMEM63C	Q9P1W3	806 aa		5.63	□□□□□ -1.51
USP44-208	ENST00000552440	TM4SF5	O14894	197 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	CREB3	O43889	395 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	CYP2E1	P05181	493 aa	Predicted RBP	5.62	□□□□□ -1.51
USP44-208	ENST00000552440	YBX3	P16989	372 aa	Known RBP eCLIP	5.62	□□□□□ -1.51
USP44-208	ENST00000552440	PTMS	P20962	102 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	DNM1	Q05193	864 aa	Known RBP	5.62	□□□□□ -1.51
USP44-208	ENST00000552440	C8orf34	Q49A92	452 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	RNF187	Q5TA31	235 aa	Predicted RBP	5.62	□□□□□ -1.51
USP44-208	ENST00000552440	NUTM2G	Q5VZR2	741 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	ZNF746	Q6NUN9	644 aa	Predicted RBP	5.62	□□□□□ -1.51
USP44-208	ENST00000552440	EDEM1	Q92611	657 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	SETDB2	Q96T68	719 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	KRTAP4-12	Q9BQ66	201 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	CAPN10	Q9HC96	672 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	METTL5	Q9NRN9	209 aa	Known RBP	5.62	□□□□□ -1.51
USP44-208	ENST00000552440	HMX2	A2RU54	273 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	SPINK2	P20155	84 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	ITGAE	P38570	1179 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	RBL2	Q08999	1139 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	PSMD2	Q13200	908 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	IKBKE	Q14164	716 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	ENOX2	Q16206	610 aa	Known RBP	5.62	□□□□□ -1.51
USP44-208	ENST00000552440	LCE3B	Q5TA77	95 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	JAZF1	Q86VZ6	243 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	ATCAY	Q86WG3	371 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	GML	Q99445	158 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	METTL22	Q9BUU2	404 aa	Predicted RBP	5.62	□□□□□ -1.51
USP44-208	ENST00000552440	CCSER2	Q9H7U1	834 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	SUGCT	Q9HAC7	445 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	CNTN3	Q9P232	1028 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	COL4A3BP	Q9Y5P4	624 aa		5.62	□□□□□ -1.51
USP44-208	ENST00000552440	PPFIA4	O75335	1185 aa		5.61	□□□□□ -1.51
USP44-208	ENST00000552440	PDGFA	P04085	211 aa		5.61	□□□□□ -1.51
USP44-208	ENST00000552440	ATP2B2	Q01814	1243 aa		5.61	□□□□□ -1.51
USP44-208	ENST00000552440	KRTAP1-3	Q8IUG1	177 aa		5.61	□□□□□ -1.51
USP44-208	ENST00000552440	GJD3	Q8N144	294 aa		5.61	□□□□□ -1.51
USP44-208	ENST00000552440	TMTC2	Q8N394	836 aa		5.61	□□□□□ -1.51
USP44-208	ENST00000552440	C1orf127	Q8N9H9	656 aa		5.61	□□□□□ -1.51
USP44-208	ENST00000552440	SMG8	Q8ND04	991 aa	Known RBP	5.61	□□□□□ -1.51
USP44-208	ENST00000552440	UBASH3B	Q8TF42	649 aa		5.61	□□□□□ -1.51
USP44-208	ENST00000552440	EVI5L	Q96CN4	794 aa		5.61	□□□□□ -1.51
USP44-208	ENST00000552440	NIF3L1	Q9GZT8	377 aa		5.61	□□□□□ -1.51
USP44-208	ENST00000552440	VTI1B	Q9UEU0	232 aa		5.61	□□□□□ -1.51
USP44-208	ENST00000552440	SOX13	Q9UN79	622 aa		5.61	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms