RNA–Protein interactions for RNA: ENST00000551355.5

NEK3-203, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 727 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-203ENST00000551355 TSGA10IPQ3SY00 556 aa12.41□□□□□ -0.42
NEK3-203ENST00000551355 ADGRA1Q86SQ6 560 aa12.41□□□□□ -0.42
NEK3-203ENST00000551355 LCORLQ8N3X6 602 aa12.41□□□□□ -0.42
NEK3-203ENST00000551355 DPF2Q92785 391 aa12.41□□□□□ -0.42
NEK3-203ENST00000551355 KCNB2Q92953 911 aa12.41□□□□□ -0.42
NEK3-203ENST00000551355 GMLQ99445 158 aa12.41□□□□□ -0.42
NEK3-203ENST00000551355 ARMT1Q9H993 441 aa12.41□□□□□ -0.42
NEK3-203ENST00000551355 AATFQ9NY61 560 aaKnown RBP eCLIP12.41□□□□□ -0.42
NEK3-203ENST00000551355 SLC4A4Q9Y6R1 1079 aa12.41□□□□□ -0.42
NEK3-203ENST00000551355 ZC3H4Q9UPT8 1303 aaKnown RBP12.4□□□□□ -0.42
NEK3-203ENST00000551355 F8W031 263 aaPredicted RBP12.4□□□□□ -0.42
NEK3-203ENST00000551355 USP17L8P0C7I0 530 aa12.4□□□□□ -0.42
NEK3-203ENST00000551355 PSMA5P28066 241 aa12.4□□□□□ -0.42
NEK3-203ENST00000551355 ANP32AP39687 249 aaKnown RBP12.4□□□□□ -0.42
NEK3-203ENST00000551355 BTDP43251 543 aa12.4□□□□□ -0.42
NEK3-203ENST00000551355 CRKP46108 304 aa12.4□□□□□ -0.42
NEK3-203ENST00000551355 KIAA0825Q8IV33 1275 aa12.4□□□□□ -0.42
NEK3-203ENST00000551355 AMOTL1Q8IY63 956 aa12.4□□□□□ -0.42
NEK3-203ENST00000551355 NAPBQ9H115 298 aa12.4□□□□□ -0.42
NEK3-203ENST00000551355 RBM19Q9Y4C8 960 aaKnown RBP12.4□□□□□ -0.42
NEK3-203ENST00000551355 DAGLAQ9Y4D2 1042 aa12.4□□□□□ -0.42
NEK3-203ENST00000551355 MAST2Q6P0Q8 1798 aa12.39□□□□□ -0.43
NEK3-203ENST00000551355 GSG1L2A8MUP6 293 aa12.39□□□□□ -0.43
NEK3-203ENST00000551355 ZNF213O14771 459 aa12.39□□□□□ -0.43
NEK3-203ENST00000551355 FGAP02671 866 aa12.39□□□□□ -0.43
NEK3-203ENST00000551355 NT5C2P49902 561 aa12.39□□□□□ -0.43
NEK3-203ENST00000551355 RABEP1Q15276 862 aa12.39□□□□□ -0.43
NEK3-203ENST00000551355 VPS53Q5VIR6 699 aa12.39□□□□□ -0.43
NEK3-203ENST00000551355 CREB3L3Q68CJ9 461 aa12.39□□□□□ -0.43
NEK3-203ENST00000551355 IFNL3Q8IZI9 196 aa12.39□□□□□ -0.43
NEK3-203ENST00000551355 GPC2Q8N158 579 aa12.39□□□□□ -0.43
NEK3-203ENST00000551355 MTMR14Q8NCE2 650 aa12.39□□□□□ -0.43
NEK3-203ENST00000551355 MXD3Q9BW11 206 aa12.39□□□□□ -0.43
NEK3-203ENST00000551355 MYH13Q9UKX3 1938 aa12.39□□□□□ -0.43
NEK3-203ENST00000551355 DCAF8L1A6NGE4 600 aa12.38□□□□□ -0.43
NEK3-203ENST00000551355 SLC27A2O14975 620 aa12.38□□□□□ -0.43
NEK3-203ENST00000551355 HMGB1P09429 215 aaKnown RBP12.38□□□□□ -0.43
NEK3-203ENST00000551355 PCP11498 1178 aaKnown RBP12.38□□□□□ -0.43
NEK3-203ENST00000551355 USP5P45974 858 aa12.38□□□□□ -0.43
NEK3-203ENST00000551355 TDO2P48775 406 aa12.38□□□□□ -0.43
NEK3-203ENST00000551355 SCNN1DP51172 638 aa12.38□□□□□ -0.43
NEK3-203ENST00000551355 RBM5P52756 815 aaKnown RBP eCLIP12.38□□□□□ -0.43
NEK3-203ENST00000551355 DYNLL1P63167 89 aaKnown RBP12.38□□□□□ -0.43
NEK3-203ENST00000551355 TM6SF1Q9BZW5 370 aa12.38□□□□□ -0.43
NEK3-203ENST00000551355 RNF181Q9P0P0 153 aa12.38□□□□□ -0.43
NEK3-203ENST00000551355 TAOK2Q9UL54 1235 aa12.38□□□□□ -0.43
NEK3-203ENST00000551355 COL4A5P29400 1685 aa12.38□□□□□ -0.43
NEK3-203ENST00000551355 FOXP2O15409 715 aa12.37□□□□□ -0.43
NEK3-203ENST00000551355 MYO1BO43795 1136 aa12.37□□□□□ -0.43
NEK3-203ENST00000551355 SLC3A2P08195 630 aaKnown RBP12.37□□□□□ -0.43
NEK3-203ENST00000551355 PRELPP51888 382 aa12.37□□□□□ -0.43
NEK3-203ENST00000551355 RHBDL3P58872 404 aa12.37□□□□□ -0.43
NEK3-203ENST00000551355 ZNF280AP59817 542 aaPredicted RBP12.37□□□□□ -0.43
NEK3-203ENST00000551355 DLGAP5Q15398 846 aa12.37□□□□□ -0.43
NEK3-203ENST00000551355 CFAP100Q494V2 611 aa12.37□□□□□ -0.43
NEK3-203ENST00000551355 SBK1Q52WX2 424 aa12.37□□□□□ -0.43
NEK3-203ENST00000551355 APOBEC3HQ6NTF7 200 aaKnown RBP12.37□□□□□ -0.43
NEK3-203ENST00000551355 TEX11Q8IYF3 940 aa12.37□□□□□ -0.43
NEK3-203ENST00000551355 SH3RF3Q8TEJ3 882 aaPredicted RBP12.37□□□□□ -0.43
NEK3-203ENST00000551355 ARPP21Q9UBL0 812 aaPredicted RBP12.37□□□□□ -0.43
NEK3-203ENST00000551355 SNX14Q9Y5W7 946 aa12.37□□□□□ -0.43
NEK3-203ENST00000551355 CYP21A2P08686 494 aa12.36□□□□□ -0.43
NEK3-203ENST00000551355 C9orf131Q5VYM1 1079 aa12.36□□□□□ -0.43
NEK3-203ENST00000551355 DPY19L2Q6NUT2 758 aa12.36□□□□□ -0.43
NEK3-203ENST00000551355 SDR42E1Q8WUS8 393 aa12.36□□□□□ -0.43
NEK3-203ENST00000551355 RNF41Q9H4P4 317 aaPredicted RBP12.36□□□□□ -0.43
NEK3-203ENST00000551355 DCP1AQ9NPI6 582 aaPredicted RBP12.36□□□□□ -0.43
NEK3-203ENST00000551355 USP40Q9NVE5 1235 aa12.36□□□□□ -0.43
NEK3-203ENST00000551355 TMOD2Q9NZR1 351 aa12.36□□□□□ -0.43
NEK3-203ENST00000551355 ANAPC4Q9UJX5 808 aa12.36□□□□□ -0.43
NEK3-203ENST00000551355 ZBTB12Q9Y330 459 aaPredicted RBP12.36□□□□□ -0.43
NEK3-203ENST00000551355 MYH7P12883 1935 aa12.36□□□□□ -0.43
NEK3-203ENST00000551355 SPDYE2BA6NHP3 402 aa12.35□□□□□ -0.43
NEK3-203ENST00000551355 H7C1D1 291 aa12.35□□□□□ -0.43
NEK3-203ENST00000551355 PRKAB2O43741 272 aa12.35□□□□□ -0.43
NEK3-203ENST00000551355 ST18O60284 1047 aa12.35□□□□□ -0.43
NEK3-203ENST00000551355 SPDYE6P0CI01 402 aa12.35□□□□□ -0.43
NEK3-203ENST00000551355 TRDNQ13061 729 aa12.35□□□□□ -0.43
NEK3-203ENST00000551355 FKBP1CQ5VVH2 108 aa12.35□□□□□ -0.43
NEK3-203ENST00000551355 CDC42EP5Q6NZY7 148 aa12.35□□□□□ -0.43
NEK3-203ENST00000551355 TGFBRAP1Q8WUH2 860 aa12.35□□□□□ -0.43
NEK3-203ENST00000551355 KIF2CQ99661 725 aa12.35□□□□□ -0.43
NEK3-203ENST00000551355 IDI2Q9BXS1 227 aa12.35□□□□□ -0.43
NEK3-203ENST00000551355 CNNM2Q9H8M5 875 aa12.35□□□□□ -0.43
NEK3-203ENST00000551355 ZNF287Q9HBT7 754 aa12.35□□□□□ -0.43
NEK3-203ENST00000551355 EPB41L4AQ9HCS5 686 aaPredicted RBP12.35□□□□□ -0.43
NEK3-203ENST00000551355 MKRN1Q9UHC7 482 aaKnown RBP12.35□□□□□ -0.43
NEK3-203ENST00000551355 GJA3Q9Y6H8 435 aa12.35□□□□□ -0.43
NEK3-203ENST00000551355 CCDC88AQ3V6T2 1871 aa12.35□□□□□ -0.43
NEK3-203ENST00000551355 MCM2P49736 904 aa12.34□□□□□ -0.43
NEK3-203ENST00000551355 GMPSP49915 693 aaPredicted RBP12.34□□□□□ -0.43
NEK3-203ENST00000551355 CTR9Q6PD62 1173 aa12.34□□□□□ -0.43
NEK3-203ENST00000551355 TTC6Q86TZ1 520 aa12.34□□□□□ -0.43
NEK3-203ENST00000551355 RASEFQ8IZ41 740 aa12.34□□□□□ -0.43
NEK3-203ENST00000551355 NEK1Q96PY6 1258 aa12.34□□□□□ -0.43
NEK3-203ENST00000551355 KRT23Q9C075 422 aa12.34□□□□□ -0.43
NEK3-203ENST00000551355 DHX36Q9H2U1 1008 aaKnown RBP12.34□□□□□ -0.43
NEK3-203ENST00000551355 ZSWIM6Q9HCJ5 1215 aa12.34□□□□□ -0.43
NEK3-203ENST00000551355 MYOZ2Q9NPC6 264 aa12.34□□□□□ -0.43
NEK3-203ENST00000551355 MCM9Q9NXL9 1143 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms